Cagra.8874s0007 (Capsella grandiflora)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 Cagra.8874s0007 T323408_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.987 0.947
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.987 0.947
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.970 0.920
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.8874s0007.1.p SBP 176 250
Cagra.8874s0007.2.p SBP 176 250

Links

Other SBP family TFs
Other Capsella grandiflora TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.2570s0082 Boechera stricta Bostr.2570s0082 I
Bra018490 Brassica rapa Bra018490 I
Cla005226 Citrullus lanatus Cla005226 I
Cla009163 Citrullus lanatus Cla009163 I
Cucsa.050930 Cucumis sativus Cucsa.050930 I
Thhalv10024119m.g Eutrema salsugineum Thhalv10024119m.g I
Thhalv10023873m.g Eutrema salsugineum Thhalv10023873m.g I
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I
Gorai.013G210700 Gossypium raimondii Gorai.013G210700 N
Gorai.013G168300 Gossypium raimondii Gorai.013G168300 I
Gorai.013G210600 Gossypium raimondii Gorai.013G210600 N
LjSGA_126766.1 Lotus japonicus LjSGA_126766.1 I
LjSGA_107301.1 Lotus japonicus LjSGA_107301.1 I
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I
MDP0000846004 Malus domestica MDP0000846004 I
cassava19828.m1 Manihot esculenta cassava19828.m1 I
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I
POPTR_0013s00350 Populus trichocarpa POPTR_0013s00350 I
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I
TCM_026842 Theobroma cacao TCM_026842 I
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I