orange1.1g032310m.g (Citrus sinensis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 orange1.1g032310m.g T323605_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.965 0.800
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.965 0.800
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.965 0.800
SPL1
M00887_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Franco-Zorrilla et al.(2014)
SPL1 		0.919 0.693
SPL1
M07259_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL1_col_a 		0.919 0.693
SPL1
M07260_2.00 		Arabidopsis thaliana
NNGTACGKWH
DWMCGTACNN		 Dap-seq
OMalley et al.(2016)
SPL1_colamp_a 		0.919 0.693
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.915 0.693
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.914 0.680
PRUPE_ppa000682mg
M02478_2.00 		Prunus persica
NNNNGTACGD
HCGTACNNNN		 PBM
Weirauch et al.(2014)
pTH9281 		0.913 0.680
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.910 0.787
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.910 0.747
POPTR_0002s00440
M02477_2.00 		Populus trichocarpa
NGTACGG
CCGTACN		 PBM
Weirauch et al.(2014)
pTH9280 		0.903 0.667
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.903 0.680
SPL14
M02470_2.00 		Arabidopsis thaliana
NNNRTACNN
NNGTAYNNN		 PBM
Weirauch et al.(2014)
pTH8191 		0.900 0.680
SPL14
M07253_2.00 		Arabidopsis thaliana
NNNBGTACGGW
WCCGTACVNNN		 Dap-seq
OMalley et al.(2016)
SPL14_col_a 		0.900 0.680
SPL14
M11270_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SPL14_01 		0.900 0.680
AT1G76580
M02473_2.00 		Arabidopsis thaliana
NNNRTAYNNN
NNNRTAYNNN		 PBM
Weirauch et al.(2014)
pTH8668 		0.893 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g032310m SBP 59 133

Links

Other SBP family TFs
Other Citrus sinensis TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I
AT5G05550 Arabidopsis thaliana AT5G05550 D
AT3G11100 Arabidopsis thaliana AT3G11100 I
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I
Bo9g177060 Brassica oleracea Bo9g177060 I
Bo5g136850 Brassica oleracea Bo5g136850 I
Bra009119 Brassica rapa Bra009119 I
Bra034165 Brassica rapa Bra034165 I
Bra034866 Brassica rapa Bra034866 I
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I
Carubv10014421m.g Capsella rubella Carubv10014421m.g I
Carubv10001830m.g Capsella rubella Carubv10001830m.g I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I
Solyc02g076810.2 Solanum lycopersicum Solyc02g076810.2 I
PGSC0003DMG400010197 Solanum tuberosum PGSC0003DMG400010197 I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I