BRADI2G45927 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI2G45927 T326728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.417 0.507
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G45927.1 Sox 43 112

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05073 Aegilops tauschii F775_05073 I 0.691
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.623
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.427
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.552
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.439
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.517
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.415
HMGB1 Arabidopsis thaliana AT3G51880 I 0.415
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.569
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.439
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.415
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.594
Bo8g081200 Brassica oleracea Bo8g081200 I 0.415
Bo4g182600 Brassica oleracea Bo4g182600 N 0.569
Bra021911 Brassica rapa Bra021911 N 0.569
PK22924.1 Cannabis sativa PK22924.1 N 0.569
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.594
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.415
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.594
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.415
Ca_05351 Cicer arietinum Ca_05351 I 0.459
Ca_05164 Cicer arietinum Ca_05164 N 0.611
Ca_05162 Cicer arietinum Ca_05162 N 0.611
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.632
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.632
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.588
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.623
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.543
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.415
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.417
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.579
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.628
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.628
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.426
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.426
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.424
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.632
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.681
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.575
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.558
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.545
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.487
MDP0000143506 Malus domestica MDP0000143506 N 0.643
MDP0000170945 Malus domestica MDP0000170945 N 0.493
MDP0000392251 Malus domestica MDP0000392251 N 0.455
MDP0000695104 Malus domestica MDP0000695104 N 0.623
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.601
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.589
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.421
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.648
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.431
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.417
mgf009922m Mimulus guttatus mgf009922m N 0.538
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.582
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.593
OBART01G25720 Oryza barthii OBART01G25720 N 0.538
OB01G34910 Oryza brachyantha OB01G34910 I 0.635
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.538
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.538
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.538
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.535
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.538
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.538
OS01G0666200 Oryza sativa OS01G0666200 N 0.538
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.558
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.659
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.423
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.423
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.423
HMG-1 Pisum sativum Q41026_PEA D 0.417
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.576
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.634
29693.m002035 Ricinus communis 29693.m002035 N 0.640
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.586
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.429
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.429
Si003021m.g Setaria italica Si003021m.g N 0.685
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.652
TCM_042534 Theobroma cacao TCM_042534 I 0.417
TCM_029514 Theobroma cacao TCM_029514 N 0.632
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.691
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.455
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.419
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.646