CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thaps23446
(
Thalassiosira pseudonana
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
Thaps23446
T332919_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thaps23446
Sox
10
41
PMRPLTAYHIFFQIEREYIIQTTPGSSADSSI
Thaps23446
Sox
70
129
KRSKRKHRKSHGKIGFLELSRVVSGRWANLEMEDPETKRFVTGIAKRELDEYKREMQEYE
Links
Other
Sox
family TFs
Other
Thalassiosira pseudonana
TFs
16 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
estExt_fgenesh2_kg.C_130080
Fragilariopsis cylindrus
estExt_fgenesh2_kg.C_130080
N
0.427
estExt_Genewise1Plus.C_70298
Fragilariopsis cylindrus
estExt_Genewise1Plus.C_70298
N
0.430
PAS_chr1-1_0442
Komagataella pastoris
PAS_chr1-1_0442
N
0.446
Phatr3_J38097
Phaeodactylum tricornutum
Phatr3_J38097
N
0.433
Phatr3_J39045
Phaeodactylum tricornutum
Phatr3_J39045
N
0.421
Phatr3_J47350
Phaeodactylum tricornutum
Phatr3_J47350
N
0.415
Phatr3_J49938
Phaeodactylum tricornutum
Phatr3_J49938
N
0.436
Phatr3_J50240
Phaeodactylum tricornutum
Phatr3_J50240
N
0.422
XP_002490100.1
Pichia pastoris
XP_002490100.1
N
0.446
Thaps22858
Thalassiosira pseudonana
Thaps22858
N
0.445
Thaps22889
Thalassiosira pseudonana
Thaps22889
N
0.431
Thaps24500
Thalassiosira pseudonana
Thaps24500
N
0.474
Thaps24755
Thalassiosira pseudonana
Thaps24755
N
0.440
Thaps25909
Thalassiosira pseudonana
Thaps25909
N
0.478
Thaps5285
Thalassiosira pseudonana
Thaps5285
N
0.427
Thapsdraft1840
Thalassiosira pseudonana
Thapsdraft1840
N
0.459