Carubv10000930m.g (Capsella rubella)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Carubv10000930m.g T334412_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.671 0.878
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.671 0.878
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10000930m Sox 139 207
Carubv10000930m Sox 256 322
Carubv10000930m Sox 382 450

Links

Other Sox family TFs
Other Capsella rubella TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I 0.000
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.000
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.000
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.000
PK07402.1 Cannabis sativa PK07402.1 D 0.000
PK07829.1 Cannabis sativa PK07829.1 I 0.000
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.000
Cla006713 Citrullus lanatus Cla006713 I 0.000
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.000
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.000
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.000
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.000
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.000
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.000
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.000
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.000
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.000
Lus10003581.g Linum usitatissimum Lus10003581.g I 0.000
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.000
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.000
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.000
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.000
MDP0000153866 Malus domestica MDP0000153866 I 0.000
cassava25887.m1 Manihot esculenta cassava25887.m1 I 0.000
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.000
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.000
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.000
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.000
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.000
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.000
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.000
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.000
OBART01G04210 Oryza barthii OBART01G04210 I 0.000
OB01G13930 Oryza brachyantha OB01G13930 I 0.000
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.000
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.000
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.000
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.000
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.000
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.000
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.000
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.000
DREB2A Oryza sativa OS01G0165000 I 0.000
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I 0.000
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.000
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.000
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.000
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.000
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.000
29680.m001737 Ricinus communis 29680.m001737 I 0.000
29729.m002292 Ricinus communis 29729.m002292 I 0.000
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.000
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.000
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.000
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.000
Si002067m.g Setaria italica Si002067m.g I 0.000
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.000
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.000
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.000
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.000
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.000
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.000
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.000
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.000
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.000