PCF2 (Oryza sativa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 OS08G0544800 T344242_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PCF2
M11399_2.00		 Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.969 0.761
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.969 0.739
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.967 0.670
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.967 0.670
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.967 0.670
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.967 0.670
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.967 0.648
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.962 0.750
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.961 0.705
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.960 0.693
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.960 0.739
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.960 0.739
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.960 0.739
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.960 0.739
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.960 0.739
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.955 0.716
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.955 0.648
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.954 0.693
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.954 0.693
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.954 0.693
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.954 0.693
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.951 0.659
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.951 0.659
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.950 0.670
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.950 0.659
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.947 0.659
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.944 0.648
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.943 0.636
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.940 0.602
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.940 0.602
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.925 0.568
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.924 0.545
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.896 0.534
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.896 0.534
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OS08T0544800-01 TCP 73 194

Links

Other TCP family TFs
Other Oryza sativa TFs

660 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_23096 Aegilops tauschii F775_23096 I
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
BIM2 Arabidopsis thaliana AT1G69010 D
BIM1 Arabidopsis thaliana AT5G08130 D
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra029354 Brassica rapa Bra029354 I
Bra038332 Brassica rapa Bra038332 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK10562.1 Cannabis sativa PK10562.1 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
Ca_22043 Cicer arietinum Ca_22043 I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
MLOC_62335 Hordeum vulgare MLOC_62335 I
LPERR08G15680 Leersia perrieri LPERR08G15680 I
LPERR09G10080 Leersia perrieri LPERR09G10080 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10007974.g Linum usitatissimum Lus10007974.g I
Lus10013502.g Linum usitatissimum Lus10013502.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
mgf001137m Mimulus guttatus mgf001137m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
OBART09G13850 Oryza barthii OBART09G13850 I
OB02G38020 Oryza brachyantha OB02G38020 I
OB08G25940 Oryza brachyantha OB08G25940 I
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I
BGIOSGA005697 Oryza indica BGIOSGA005697 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
BGIOSGA030958 Oryza indica BGIOSGA030958 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OLONG_020060 Oryza longistaminata OLONG_020060 I
OMERI09G10560 Oryza meridionalis OMERI09G10560 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
ONIVA09G14370 Oryza nivara ONIVA09G14370 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
OPUNC09G12310 Oryza punctata OPUNC09G12310 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I
OS02G0726700 Oryza sativa OS02G0726700 I
OS08G0490000 Oryza sativa OS08G0490000 I
OS09G0475400 Oryza sativa OS09G0475400 I
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J04606 Panicum virgatum Pavir.J04606 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003899 Ricinus communis 30138.m003899 I
30138.m003913 Ricinus communis 30138.m003913 I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si013622m.g Setaria italica Si013622m.g I
Si016505m.g Setaria italica Si016505m.g I
Si029604m.g Setaria italica Si029604m.g I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
Sb02g027460 Sorghum bicolor Sb02g027460 I
Sb04g029270 Sorghum bicolor Sb04g029270 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I
BIM2 Vitis vinifera VIT_01s0010g00540 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
BIM1 Vitis vinifera VIT_17s0000g04790 I
GRMZM2G009478 Zea mays GRMZM2G009478 I
GRMZM2G089501 Zea mays GRMZM2G089501 I
GRMZM2G317450 Zea mays GRMZM2G317450 I