Ciclev10007109m.g (Citrus clementina)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ciclev10007109m.g T344775_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.924 0.365
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.924 0.365
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.924 0.365
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.917 0.357
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10007109m TCP 125 203
Ciclev10007109m TCP 189 226

Links

Other TCP family TFs
Other Citrus clementina TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCP8 Arabidopsis thaliana AT1G58100 D
BRADI4G35670 Brachypodium distachyon BRADI4G35670 N
Bo9g052090 Brassica oleracea Bo9g052090 N
Bra018126 Brassica rapa Bra018126 N
Bra032365 Brassica rapa Bra032365 I 0.923
evm.TU.supercontig_70.118 Carica papaya evm.TU.supercontig_70.118 N
evm.TU.supercontig_66.26 Carica papaya evm.TU.supercontig_66.26 N
Cla007052 Citrullus lanatus Cla007052 N
Thhalv10008175m.g Eutrema salsugineum Thhalv10008175m.g I 0.904
gene10333-v1.0-hybrid Fragaria vesca gene10333-v1.0-hybrid I 0.959
Lus10042962.g Linum usitatissimum Lus10042962.g I 0.922
GSMUA_Achr6G17840_001 Musa acuminata GSMUA_Achr6G17840_001 N
ORUFI02G26600 Oryza rufipogon ORUFI02G26600 N
Pavir.Fa00111 Panicum virgatum Pavir.Fa00111 N
SELMODRAFT_429489 Selaginella moellendorffii SELMODRAFT_429489 N
SELMODRAFT_441321 Selaginella moellendorffii SELMODRAFT_441321 N
PGSC0003DMG400024928 Solanum tuberosum PGSC0003DMG400024928 N
Sb08g004610 Sorghum bicolor Sb08g004610 N
Traes_5BL_B94C45A8F Triticum aestivum Traes_5BL_B94C45A8F N
BRC1 Vitis vinifera VIT_17s0000g04180 I 0.959