DAPPUDRAFT_249991 (Daphnia pulex)
Homeodomain,Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox)
PF00292 (PAX) 		IPR001356
IPR001523 		DAPPUDRAFT_249991 T237252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ey
M03896_2.00 		Drosophila melanogaster
CKAATTAD
HTAATTMG		 SELEX
Nitta et al.(2015)
ey_1 		0.929 0.929
ey
M03897_2.00 		Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD		 SELEX
Nitta et al.(2015)
ey_2 		0.929 0.929
ey
M03898_2.00 		Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW		 SELEX
Nitta et al.(2015)
ey_3 		0.929 0.929
PAX6
M00342_2.00 		Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN		 PBM
Barrera et al.(2016)
PAX6_REF 		0.923 0.923
Pax6
M00540_2.00 		Mus musculus
CBAATTAA
TTAATTVG		 PBM
Berger et al.(2008)
Pax6_3838 		0.923 0.923
PAX6
M03291_2.00 		Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH		 SELEX
Jolma et al.(2013)
PAX6_1 		0.923 0.923
PAX6
M05412_2.00 		Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX 		0.923 0.923
PAX6
M05414_2.00 		Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN		 SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX 		0.923 0.923
PAX6
M02689_2.00 		Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA		 SELEX
Mathelier et al.(2014)
MA0069.1 		0.923 0.923
PAX6
M09216_2.00 		Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C 		0.923 0.923
Pax6
M09217_2.00 		Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA		 Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C 		0.923 0.923
PAX6
M10806_2.00 		Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN		 Transfac
Matys et al.(2006)
V$PAX6_01 		0.923 0.923
PAX6
M10807_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX6_Q2 		0.923 0.923
PAX6
M05413_2.00 		Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH		 SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX 		0.923 0.923
PAX6
M05415_2.00 		Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN		 SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX 		0.923 0.923
PAX6
M00335_2.00 		Homo sapiens
BRNNNNNN
NNNNNNYV		 PBM
Barrera et al.(2016)
PAX6_A79E 		0.918 0.918
PAX6
M00336_2.00 		Homo sapiens
RTGCACAC
GTGTGCAY		 PBM
Barrera et al.(2016)
PAX6_F258S 		0.918 0.918
PAX6
M00337_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
PAX6_P118R 		0.918 0.918
PAX6
M00338_2.00 		Homo sapiens
WSGVRVDR
YHBYBCSW		 PBM
Barrera et al.(2016)
PAX6_P68S 		0.918 0.918
PAX6
M00339_2.00 		Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN		 PBM
Barrera et al.(2016)
PAX6_R128C 		0.918 0.918
PAX6
M00340_2.00 		Homo sapiens
NNNNNRN
NYNNNNN		 PBM
Barrera et al.(2016)
PAX6_R242T 		0.918 0.918
PAX6
M00341_2.00 		Homo sapiens
BTSCCCSGSC
GSCSGGGSAV		 PBM
Barrera et al.(2016)
PAX6_R26G 		0.918 0.918
PAX6
M00343_2.00 		Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN		 PBM
Barrera et al.(2016)
PAX6_S119R 		0.918 0.918
PAX6
M00344_2.00 		Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN		 PBM
Barrera et al.(2016)
PAX6_V126D 		0.918 0.918
toy
M03899_2.00 		Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA		 SELEX
Nitta et al.(2015)
toy_1 		0.896 0.896
toy
M03900_2.00 		Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN		 SELEX
Nitta et al.(2015)
toy_2 		0.896 0.896
toy
M03901_2.00 		Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB		 SELEX
Nitta et al.(2015)
toy_3 		0.896 0.896
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX75780 Paired box 16 140
EFX75780 Homeodomain 284 340

Links

Other Homeodomain,Paired box family TFs
Other Daphnia pulex TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L798_11483 Zootermopsis nevadensis L798_11483 I 0.950
ey Drosophila pseudoobscura FBgn0018538 I 0.934
TC008176 Tribolium castaneum TC008176 I 0.934
GK13702 Drosophila willistoni FBgn0215710 I 0.934
GI14081 Drosophila mojavensis FBgn0136835 I 0.934
ENSAMXG00000013008 Astyanax mexicanus ENSAMXG00000013008 I 0.934
ey Drosophila persimilis FBgn0043659 I 0.934
ENSPFOG00000016987 Poecilia formosa ENSPFOG00000016987 I 0.929
ey Drosophila virilis FBgn0028754 I 0.929
ENSLOCG00000004578 Lepisosteus oculatus ENSLOCG00000004578 I 0.929
pax6b Gasterosteus aculeatus ENSGACG00000016030 I 0.929
GE14559 Drosophila yakuba FBgn0232158 I 0.929
GG16399 Drosophila erecta FBgn0108631 I 0.929
pax6b Oryzias latipes ENSORLG00000009913 I 0.929
pax6a Danio rerio ENSDARG00000103379 I 0.929
pax6b Danio rerio ENSDARG00000045936 I 0.929
ENSONIG00000005541 Oreochromis niloticus ENSONIG00000005541 I 0.929
ENSAMXG00000001228 Astyanax mexicanus ENSAMXG00000001228 I 0.929
pax6b Takifugu rubripes ENSTRUG00000006935 I 0.929
ey Drosophila melanogaster FBgn0005558 D 0.929
ACYPI067710 Acyrthosiphon pisum ACYPI067710 I 0.929
pax6b Tetraodon nigroviridis ENSTNIG00000013804 I 0.929
ey Drosophila sechellia FBgn0068720 I 0.929
GF22818 Drosophila ananassae FBgn0099812 I 0.929
ENSGMOG00000012304 Gadus morhua ENSGMOG00000012304 I 0.929
PAX6 Otolemur garnettii ENSOGAG00000007857 I 0.923
ENSOARG00000016191 Ovis aries ENSOARG00000016191 I 0.923
PAX6 Myotis lucifugus ENSMLUG00000006517 I 0.923
ENSMPUG00000011295 Mustela putorius furo ENSMPUG00000011295 I 0.923
PAX6 Macaca mulatta ENSMMUG00000016810 I 0.923
Pax6 Mus musculus ENSMUSG00000027168 D 0.923
ENSPSIG00000012748 Pelodiscus sinensis ENSPSIG00000012748 I 0.923
PAX6 Sus scrofa ENSSSCG00000013320 I 0.923
ENSSTOG00000003211 Ictidomys tridecemlineatus ENSSTOG00000003211 I 0.923
ENSXMAG00000014260 Xiphophorus maculatus ENSXMAG00000014260 I 0.923
ENSSHAG00000016310 Sarcophilus harrisii ENSSHAG00000016310 I 0.923
Pax6 Rattus norvegicus ENSRNOG00000004410 I 0.923
ENSPANG00000005448 Papio anubis ENSPANG00000005448 I 0.923
PAX6 Procavia capensis ENSPCAG00000005165 I 0.923
PAX6 Ochotona princeps ENSOPRG00000001678 I 0.923
PAX6 Microcebus murinus ENSMICG00000004089 I 0.923
ENSCSAG00000005253 Chlorocebus sabaeus ENSCSAG00000005253 I 0.923
PAX6 Dasypus novemcinctus ENSDNOG00000000761 I 0.923
PAX6 Callithrix jacchus ENSCJAG00000005942 I 0.923
PAX6 Anolis carolinensis ENSACAG00000002252 I 0.923
pax6 Xenopus tropicalis XB-GENE-484088 I 0.923
Pvit_09512 Pogona vitticeps Pvit_09512 I 0.923
PAX6 Homo sapiens ENSG00000007372 D 0.923
PAX6 Bos taurus ENSBTAG00000004561 I 0.923
ENSLACG00000015337 Latimeria chalumnae ENSLACG00000015337 I 0.923
PAX6 Gorilla gorilla ENSGGOG00000010246 I 0.923
PAX6 Gallus gallus ENSGALG00000012123 I 0.923
PAX6 Sorex araneus ENSSARG00000011424 I 0.919
ENSP00000368401-D1 Bos grunniens ENSP00000368401-D1 I 0.918
ENSP00000368424 Macaca fascicularis ENSP00000368424 I 0.918
PAX6 Loxodonta africana ENSLAFG00000015520 I 0.918
ENSAMEG00000006908 Ailuropoda melanoleuca ENSAMEG00000006908 I 0.918
PAX6 Tupaia belangeri ENSTBEG00000004748 I 0.918
ENSNLEG00000017888 Nomascus leucogenys ENSNLEG00000017888 I 0.918
Alligator_sinensis_CCG012954.1 Alligator sinensis Alligator_sinensis_CCG012954.1 I 0.918
PAX6 Cavia porcellus ENSCPOG00000007245 I 0.918
ENSONIG00000004074 Oreochromis niloticus ENSONIG00000004074 I 0.918
PAX6 Oryctolagus cuniculus ENSOCUG00000011075 I 0.918
pax6.L Xenopus laevis XB-GENE-865046 I 0.918
pax6.S Xenopus laevis XB-GENE-6464331 I 0.918
PAX6 Felis catus ENSFCAG00000007094 I 0.918
Sakowv30026828m.g Saccoglossus kowalevskii Sakowv30026828m.g I 0.918
Cflo_00481--XP_394648.3_APIME Camponotus floridanus Cflo_00481--XP_394648.3_APIME I 0.912
ENSTRUG00000017375 Takifugu rubripes ENSTRUG00000017375 I 0.912
ENSXMAG00000016421 Xiphophorus maculatus ENSXMAG00000016421 I 0.912
GB41504 Apis mellifera GB41504 I 0.912
Hsal_09597--XP_394648.3_APIME Harpegnathos saltator Hsal_09597--XP_394648.3_APIME I 0.912
NV17076 Nasonia vitripennis NV17076 I 0.912
ENSGMOG00000019087 Gadus morhua ENSGMOG00000019087 I 0.912
TC007409 Tribolium castaneum TC007409 I 0.912
DAPPUDRAFT_249978 Daphnia pulex DAPPUDRAFT_249978 I 0.912
NV15820 Nasonia vitripennis NV15820 I 0.912
GB50342 Apis mellifera GB50342 I 0.912
ENSPPYG00000003386 Pongo abelii ENSPPYG00000003386 I 0.910
PAX6 Echinops telfairi ENSETEG00000002655 I 0.908
ENSORLG00000000847 Oryzias latipes ENSORLG00000000847 I 0.907
GF21877 Drosophila ananassae FBgn0098877 I 0.907
GI14042 Drosophila mojavensis FBgn0136796 I 0.901
GA27636 Drosophila pseudoobscura FBgn0249001 I 0.901
GK13683 Drosophila willistoni FBgn0215691 I 0.901
GL17563 Drosophila persimilis FBgn0155166 I 0.901
GH23963 Drosophila grimshawi FBgn0131420 I 0.901
L798_00712 Zootermopsis nevadensis L798_00712 I 0.901
GJ13300 Drosophila virilis FBgn0200526 I 0.901
ENSGACG00000002490 Gasterosteus aculeatus ENSGACG00000002490 I 0.901
GG16402 Drosophila erecta FBgn0108634 I 0.896
GE14563 Drosophila yakuba FBgn0232162 I 0.896
GM13021 Drosophila sechellia FBgn0167952 I 0.896
toy Drosophila melanogaster FBgn0019650 D 0.896
SMAR013763 Strigamia maritima SMAR013763 I 0.896
PAX6 Monodelphis domestica ENSMODG00000009611 I 0.890
PAX6 Equus caballus ENSECAG00000021000 I 0.890
ACYPI008177 Acyrthosiphon pisum ACYPI008177 I 0.890
TMUE_s0038005250 Trichuris muris TMUE_s0038005250 I 0.890
TTRE_0000173501 Trichuris trichiura TTRE_0000173501 I 0.890
GD24416 Drosophila simulans FBgn0195753 I 0.889
LotgiG133720 Lottia gigantea LotgiG133720 I 0.885
CGI_10027695 Crassostrea gigas CGI_10027695 I 0.885
ENSTNIG00000002471 Tetraodon nigroviridis ENSTNIG00000002471 I 0.885
D918_01592 Trichuris suis D918_01592 I 0.885
ISCW021772 Ixodes scapularis ISCW021772 I 0.879
AATE014626 Anopheles atroparvus AATE014626 I 0.871
ADIR000973 Anopheles dirus ADIR000973 I 0.871
ASTEI06205 Anopheles stephensi ASTEI06205 I 0.871
AFUN011570 Anopheles funestus AFUN011570 I 0.871
AMIN002132 Anopheles minimus AMIN002132 I 0.871
ACHR009845 Anopheles christyi ACHR009845 I 0.871
ENSCING00000006503 Ciona intestinalis ENSCING00000006503 I 0.868
ENSCSAVG00000007987 Ciona savignyi ENSCSAVG00000007987 I 0.863
ADAC001560 Anopheles darlingi ADAC001560 I 0.859
AALB006354 Anopheles albimanus AALB006354 I 0.857
ASIS012967 Anopheles sinensis ASIS012967 I 0.857
AGAP000063 Anopheles gambiae AGAP000063 I 0.857
AQUA008308 Anopheles quadriannulatus AQUA008308 I 0.857
AFUN011575 Anopheles funestus AFUN011575 I 0.857
SMU15027897 Schmidtea mediterranea SMU15027897 I 0.857
AMIN002127 Anopheles minimus AMIN002127 I 0.857
Ogr12767 Ophisaurus gracilis Ogr12767 I 0.857
AMEC021831 Anopheles melas AMEC021831 I 0.857
AARA001115 Anopheles arabiensis AARA001115 I 0.857
ASTEI06200 Anopheles stephensi ASTEI06200 I 0.857
L892_g3713 Steinernema scapterisci L892_g3713 I 0.852
L596_g12356 Steinernema carpocapsae L596_g12356 I 0.852
PHUM097050 Pediculus humanus PHUM097050 I 0.852
CRE07226 Caenorhabditis remanei CRE07226 I 0.852
CBN04513 Caenorhabditis brenneri CBN04513 I 0.852
Cmyd_10016391 Chelonia mydas Cmyd_10016391 I 0.852
ADAC003449 Anopheles darlingi ADAC003449 I 0.848
AFAF009619 Anopheles farauti AFAF009619 I 0.848
AAEL002321 Aedes aegypti AAEL002321 I 0.846
HelroG80374 Helobdella robusta HelroG80374 I 0.846
RSKR_0000862000 Rhabditophanes kr3021 RSKR_0000862000 I 0.841
vab-3 Caenorhabditis elegans WBGene00006870 I 0.841
A_05170 Schistosoma haematobium A_05170 I 0.835
SMTD_0000837201 Schistosoma mattheei SMTD_0000837201 I 0.835
Smp_160670 Schistosoma mansoni Smp_160670 I 0.835
ASIS012617 Anopheles sinensis ASIS012617 I 0.834
Afo_R014630 Aptenodytes forsteri Afo_R014630 I 0.832
PAX6 Pan troglodytes ENSPTRG00000003474 I 0.829
T265_09221 Opisthorchis viverrini T265_09221 I 0.824
SPAL_0001466800 Strongyloides papillosus SPAL_0001466800 I 0.824
SSTP_0001059400 Strongyloides stercoralis SSTP_0001059400 I 0.824
SVE_0819200 Strongyloides venezuelensis SVE_0819200 I 0.824
AALB006643 Anopheles albimanus AALB006643 I 0.824
CPIJ006390 Culex quinquefasciatus CPIJ006390 I 0.824
tetur09g00660 Tetranychus urticae tetur09g00660 I 0.824
CPIJ006398 Culex quinquefasciatus CPIJ006398 I 0.824
ACUA016154 Anopheles culicifacies ACUA016154 I 0.824
CpipJ_CPIJ006398 Culex pipiens CpipJ_CPIJ006398 I 0.824
CpipJ_CPIJ006390 Culex pipiens CpipJ_CPIJ006390 I 0.824
ACUA021227 Anopheles culicifacies ACUA021227 I 0.824
AEPI005803 Anopheles epiroticus AEPI005803 I 0.819
ISCW006352 Ixodes scapularis ISCW006352 I 0.819
Smp_170750 Schistosoma mansoni Smp_170750 I 0.819
AEPI005798 Anopheles epiroticus AEPI005798 I 0.819
PTRK_0000512100 Parastrongyloides trichosuri PTRK_0000512100 I 0.819
AFAF017899 Anopheles farauti AFAF017899 I 0.819
AQUA008313 Anopheles quadriannulatus AQUA008313 I 0.819
AMEM002691 Anopheles merus AMEM002691 I 0.819
AMEC013051 Anopheles melas AMEC013051 I 0.819
AGAP000067 Anopheles gambiae AGAP000067 I 0.819
AARA001110 Anopheles arabiensis AARA001110 I 0.819
EFV57892 Trichinella spiralis EFV57892 I 0.819
ENSTSYG00000011965 Tarsius syrichta ENSTSYG00000011965 I 0.819
T265_14971 Opisthorchis viverrini T265_14971 I 0.811
csin101119 Clonorchis sinensis csin101119 I 0.809
MCINX016249 Melitaea cinxia MCINX016249 I 0.808
D917_00854 Trichinella nativa D917_00854 I 0.806
D915_07175 Fasciola hepatica D915_07175 I 0.797
ACHR008920 Anopheles christyi ACHR008920 I 0.791
ADIR000968 Anopheles dirus ADIR000968 I 0.787
HelroG173449 Helobdella robusta HelroG173449 I 0.786
csin110224 Clonorchis sinensis csin110224 I 0.786
BXY_1643500 Bursaphelenchus xylophilus BXY_1643500 I 0.786
fgenesh2_pg.scaffold_199000043 Branchiostoma floridae fgenesh2_pg.scaffold_199000043 I 0.778
MCOS_0000220101 Mesocestoides corti MCOS_0000220101 I 0.775
MESCA003564 Megaselia scalaris MESCA003564 I 0.742
TsM_000166900 Taenia solium TsM_000166900 I 0.736
LLOJ005149 Lutzomyia longipalpis LLOJ005149 I 0.736
HmN_000466300 Hymenolepis microstoma HmN_000466300 I 0.731
TTAC_0000231001 Hydatigera taeniaeformis TTAC_0000231001 I 0.725
NEMVEDRAFT_v1g239535 Nematostella vectensis NEMVEDRAFT_v1g239535 I 0.714
ENSMEUG00000015900 Macropus eugenii ENSMEUG00000015900 I 0.714
NEMVEDRAFT_v1g168908 Nematostella vectensis NEMVEDRAFT_v1g168908 I 0.709
PAX6 Tursiops truncatus ENSTTRG00000002399 I 0.702