CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RSKR_0000862000
(
Rhabditophanes kr3021
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
RSKR_0000862000
T237884_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX6
M00340_2.00
Homo sapiens
NNNNNRN
NYNNNNN
PBM
Barrera et al.(2016)
PAX6_R242T
0.863
0.863
PAX6
M00342_2.00
Homo sapiens
NNNRCDMATTANNN
NNNTAATKHGYNNN
PBM
Barrera et al.(2016)
PAX6_REF
0.857
0.857
Pax6
M00540_2.00
Mus musculus
CBAATTAA
TTAATTVG
PBM
Berger et al.(2008)
Pax6_3838
0.857
0.857
PAX6
M03291_2.00
Homo sapiens
DTWYACGCWTGANTGMDYH
DRHKCANTCAWGCGTRWAH
SELEX
Jolma et al.(2013)
PAX6_1
0.857
0.857
PAX6
M05412_2.00
Homo sapiens
NYACGCHYSRNYRMNYN
NRNKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_eDBD_HT-SELEX
0.857
0.857
PAX6
M05414_2.00
Homo sapiens
NYRCGCNYSRNYRVNYN
NRNBYRNYSRNGCGYRN
SELEX
Yin et al.(2017)
PAX6_FL_HT-SELEX
0.857
0.857
PAX6
M02689_2.00
Homo sapiens
TTYACGCWTSANTK
MANTSAWGCGTRAA
SELEX
Mathelier et al.(2014)
MA0069.1
0.857
0.857
PAX6
M09216_2.00
Homo sapiens
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_HUMAN.H11MO.0.C
0.857
0.857
Pax6
M09217_2.00
Mus musculus
TYMYRCWTSRNT
ANYSAWGYRKRA
Misc
Kulakovskiy et al.(2013)
PAX6_MOUSE.H11MO.0.C
0.857
0.857
PAX6
M10806_2.00
Homo sapiens
NHNNTTYACGCWTSANTKVHH
DDBMANTSAWGCGTRAANNDN
Transfac
Matys et al.(2006)
V$PAX6_01
0.857
0.857
PAX6
M10807_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX6_Q2
0.857
0.857
PAX6
M05413_2.00
Homo sapiens
DYRCGCWTSRNYRMNYN
NRNKYRNYSAWGCGYRH
SELEX
Yin et al.(2017)
PAX6_eDBD_Methyl-HT-SELEX
0.857
0.857
PAX6
M05415_2.00
Homo sapiens
NYACGCHYSRNYRMHYN
NRDKYRNYSRDGCGTRN
SELEX
Yin et al.(2017)
PAX6_FL_Methyl-HT-SELEX
0.857
0.857
PAX6
M00335_2.00
Homo sapiens
BRNNNNNN
NNNNNNYV
PBM
Barrera et al.(2016)
PAX6_A79E
0.852
0.852
PAX6
M00336_2.00
Homo sapiens
RTGCACAC
GTGTGCAY
PBM
Barrera et al.(2016)
PAX6_F258S
0.852
0.852
PAX6
M00337_2.00
Homo sapiens
NMTAATTANNN
NNNTAATTAKN
PBM
Barrera et al.(2016)
PAX6_P118R
0.852
0.852
PAX6
M00338_2.00
Homo sapiens
WSGVRVDR
YHBYBCSW
PBM
Barrera et al.(2016)
PAX6_P68S
0.852
0.852
PAX6
M00339_2.00
Homo sapiens
NNNNSGKVGGHNN
NNDCCBMCSNNNN
PBM
Barrera et al.(2016)
PAX6_R128C
0.852
0.852
PAX6
M00341_2.00
Homo sapiens
BTSCCCSGSC
GSCSGGGSAV
PBM
Barrera et al.(2016)
PAX6_R26G
0.852
0.852
PAX6
M00343_2.00
Homo sapiens
NNNNCCCVKCNBN
NVNGMBGGGNNNN
PBM
Barrera et al.(2016)
PAX6_S119R
0.852
0.852
PAX6
M00344_2.00
Homo sapiens
NNMSASGBYNNN
NNNRVCSTSKNN
PBM
Barrera et al.(2016)
PAX6_V126D
0.852
0.852
ey
M03896_2.00
Drosophila melanogaster
CKAATTAD
HTAATTMG
SELEX
Nitta et al.(2015)
ey_1
0.835
0.835
ey
M03897_2.00
Drosophila melanogaster
HTAATCKMATTAD
HTAATKMGATTAD
SELEX
Nitta et al.(2015)
ey_2
0.835
0.835
ey
M03898_2.00
Drosophila melanogaster
WAAYYRRTTN
NAAYYRRTTW
SELEX
Nitta et al.(2015)
ey_3
0.835
0.835
toy
M03899_2.00
Drosophila melanogaster
TTYACGCWTGASTGMACAN
NTGTKCASTCAWGCGTRAA
SELEX
Nitta et al.(2015)
toy_1
0.824
0.824
toy
M03900_2.00
Drosophila melanogaster
NTYACGCWTSAVTGMRCNN
NNGYKCABTSAWGCGTRAN
SELEX
Nitta et al.(2015)
toy_2
0.824
0.824
toy
M03901_2.00
Drosophila melanogaster
VATTANBHAYGSWYSRN
NYSRWSCRTDVNTAATB
SELEX
Nitta et al.(2015)
toy_3
0.824
0.824
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
RSKR_0000862000.1
Paired box
13
137
GHTGVNQLGGVFVNGRPLPDATRQRIVDLAHQGARPCDISRILQVSNGCVSKILCRYYESGTIRPRAIGGSKPRVATNSVCEKIEAYKREQPSIFAWEIRDKLLSDKVCSNETIPSVSSINRVLR
RSKR_0000862000.1
Homeodomain
224
280
QRNRTSFTQEQIERLEKEFERTHYPDVFARETLAATIGLPEARIQVWFSNRRAKWRR
Links
Other
Homeodomain,Paired box
family TFs
Other
Rhabditophanes kr3021
TFs
183 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.945
L892_g3713
Steinernema scapterisci
L892_g3713
I
0.945
SVE_0819200
Strongyloides venezuelensis
SVE_0819200
I
0.940
SPAL_0001466800
Strongyloides papillosus
SPAL_0001466800
I
0.940
SSTP_0001059400
Strongyloides stercoralis
SSTP_0001059400
I
0.934
PTRK_0000512100
Parastrongyloides trichosuri
PTRK_0000512100
I
0.934
CBN04513
Caenorhabditis brenneri
CBN04513
I
0.907
CRE07226
Caenorhabditis remanei
CRE07226
I
0.907
vab-3
Caenorhabditis elegans
WBGene00006870
I
0.901
ENSGMOG00000019087
Gadus morhua
ENSGMOG00000019087
I
0.868
pax6.L
Xenopus laevis
XB-GENE-865046
I
0.863
ENSNLEG00000017888
Nomascus leucogenys
ENSNLEG00000017888
I
0.863
PAX6
Oryctolagus cuniculus
ENSOCUG00000011075
I
0.863
PAX6
Cavia porcellus
ENSCPOG00000007245
I
0.863
PAX6
Loxodonta africana
ENSLAFG00000015520
I
0.863
PAX6
Felis catus
ENSFCAG00000007094
I
0.863
pax6a
Danio rerio
ENSDARG00000103379
I
0.863
PAX6
Gorilla gorilla
ENSGGOG00000010246
I
0.863
ENSAMEG00000006908
Ailuropoda melanoleuca
ENSAMEG00000006908
I
0.863
ENSP00000368424
Macaca fascicularis
ENSP00000368424
I
0.863
PAX6
Otolemur garnettii
ENSOGAG00000007857
I
0.863
ENSPSIG00000012748
Pelodiscus sinensis
ENSPSIG00000012748
I
0.863
Pax6
Rattus norvegicus
ENSRNOG00000004410
I
0.863
ENSP00000368401-D1
Bos grunniens
ENSP00000368401-D1
I
0.863
ENSLOCG00000004578
Lepisosteus oculatus
ENSLOCG00000004578
I
0.857
ENSLACG00000015337
Latimeria chalumnae
ENSLACG00000015337
I
0.857
ENSGMOG00000012304
Gadus morhua
ENSGMOG00000012304
I
0.857
ENSPANG00000005448
Papio anubis
ENSPANG00000005448
I
0.857
PAX6
Microcebus murinus
ENSMICG00000004089
I
0.857
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.857
PAX6
Macaca mulatta
ENSMMUG00000016810
I
0.857
Pax6
Mus musculus
ENSMUSG00000027168
D
0.857
ENSOARG00000016191
Ovis aries
ENSOARG00000016191
I
0.857
PAX6
Ochotona princeps
ENSOPRG00000001678
I
0.857
ENSMPUG00000011295
Mustela putorius furo
ENSMPUG00000011295
I
0.857
pax6
Xenopus tropicalis
XB-GENE-484088
I
0.857
PAX6
Myotis lucifugus
ENSMLUG00000006517
I
0.857
PAX6
Dasypus novemcinctus
ENSDNOG00000000761
I
0.857
ENSAMXG00000001228
Astyanax mexicanus
ENSAMXG00000001228
I
0.857
Pvit_09512
Pogona vitticeps
Pvit_09512
I
0.857
PAX6
Bos taurus
ENSBTAG00000004561
I
0.857
PAX6
Anolis carolinensis
ENSACAG00000002252
I
0.857
pax6b
Tetraodon nigroviridis
ENSTNIG00000013804
I
0.857
LotgiG133720
Lottia gigantea
LotgiG133720
I
0.857
Alligator_sinensis_CCG012954.1
Alligator sinensis
Alligator_sinensis_CCG012954.1
I
0.857
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.857
PAX6
Gallus gallus
ENSGALG00000012123
I
0.857
PAX6
Callithrix jacchus
ENSCJAG00000005942
I
0.857
PAX6
Homo sapiens
ENSG00000007372
D
0.857
PAX6
Sus scrofa
ENSSSCG00000013320
I
0.857
ENSSHAG00000016310
Sarcophilus harrisii
ENSSHAG00000016310
I
0.857
ENSCSAG00000005253
Chlorocebus sabaeus
ENSCSAG00000005253
I
0.857
ENSSTOG00000003211
Ictidomys tridecemlineatus
ENSSTOG00000003211
I
0.857
pax6.S
Xenopus laevis
XB-GENE-6464331
I
0.857
pax6b
Danio rerio
ENSDARG00000045936
I
0.857
PAX6
Procavia capensis
ENSPCAG00000005165
I
0.857
PAX6
Tupaia belangeri
ENSTBEG00000004748
I
0.857
pax6b
Takifugu rubripes
ENSTRUG00000006935
I
0.852
ENSPFOG00000016987
Poecilia formosa
ENSPFOG00000016987
I
0.852
ENSONIG00000005541
Oreochromis niloticus
ENSONIG00000005541
I
0.852
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.852
DAPPUDRAFT_249978
Daphnia pulex
DAPPUDRAFT_249978
I
0.852
ENSAMXG00000013008
Astyanax mexicanus
ENSAMXG00000013008
I
0.852
D918_01592
Trichuris suis
D918_01592
I
0.852
PAX6
Sorex araneus
ENSSARG00000011424
I
0.850
Cmyd_10016391
Chelonia mydas
Cmyd_10016391
I
0.847
TMUE_s0038005250
Trichuris muris
TMUE_s0038005250
I
0.846
ENSXMAG00000016421
Xiphophorus maculatus
ENSXMAG00000016421
I
0.846
SMAR013763
Strigamia maritima
SMAR013763
I
0.846
TTRE_0000173501
Trichuris trichiura
TTRE_0000173501
I
0.846
L798_11483
Zootermopsis nevadensis
L798_11483
I
0.845
PHUM097050
Pediculus humanus
PHUM097050
I
0.843
ACYPI067710
Acyrthosiphon pisum
ACYPI067710
I
0.841
ENSONIG00000004074
Oreochromis niloticus
ENSONIG00000004074
I
0.841
ENSORLG00000000847
Oryzias latipes
ENSORLG00000000847
I
0.841
TC008176
Tribolium castaneum
TC008176
I
0.841
DAPPUDRAFT_249991
Daphnia pulex
DAPPUDRAFT_249991
I
0.841
PAX6
Echinops telfairi
ENSETEG00000002655
I
0.838
ENSPPYG00000003386
Pongo abelii
ENSPPYG00000003386
I
0.838
GI14081
Drosophila mojavensis
FBgn0136835
I
0.835
GK13702
Drosophila willistoni
FBgn0215710
I
0.835
L798_00712
Zootermopsis nevadensis
L798_00712
I
0.835
ACYPI008177
Acyrthosiphon pisum
ACYPI008177
I
0.835
GF22818
Drosophila ananassae
FBgn0099812
I
0.835
ENSTRUG00000017375
Takifugu rubripes
ENSTRUG00000017375
I
0.835
ey
Drosophila pseudoobscura
FBgn0018538
I
0.835
ey
Drosophila melanogaster
FBgn0005558
D
0.835
ey
Drosophila persimilis
FBgn0043659
I
0.835
PAX6
Equus caballus
ENSECAG00000021000
I
0.835
ENSGACG00000002490
Gasterosteus aculeatus
ENSGACG00000002490
I
0.835
Sakowv30026828m.g
Saccoglossus kowalevskii
Sakowv30026828m.g
I
0.835
GB50342
Apis mellifera
GB50342
I
0.830
NV17076
Nasonia vitripennis
NV17076
I
0.830
NV15820
Nasonia vitripennis
NV15820
I
0.830
Hsal_09597--XP_394648.3_APIME
Harpegnathos saltator
Hsal_09597--XP_394648.3_APIME
I
0.830
TC007409
Tribolium castaneum
TC007409
I
0.830
GB41504
Apis mellifera
GB41504
I
0.830
BXY_1643500
Bursaphelenchus xylophilus
BXY_1643500
I
0.830
GE14559
Drosophila yakuba
FBgn0232158
I
0.830
GI14042
Drosophila mojavensis
FBgn0136796
I
0.830
GH23963
Drosophila grimshawi
FBgn0131420
I
0.830
ey
Drosophila sechellia
FBgn0068720
I
0.830
GG16399
Drosophila erecta
FBgn0108631
I
0.830
GL17563
Drosophila persimilis
FBgn0155166
I
0.830
ey
Drosophila virilis
FBgn0028754
I
0.830
GF21877
Drosophila ananassae
FBgn0098877
I
0.830
GK13683
Drosophila willistoni
FBgn0215691
I
0.830
GJ13300
Drosophila virilis
FBgn0200526
I
0.830
Cflo_00481--XP_394648.3_APIME
Camponotus floridanus
Cflo_00481--XP_394648.3_APIME
I
0.830
GA27636
Drosophila pseudoobscura
FBgn0249001
I
0.830
GM13021
Drosophila sechellia
FBgn0167952
I
0.824
toy
Drosophila melanogaster
FBgn0019650
D
0.824
GE14563
Drosophila yakuba
FBgn0232162
I
0.824
GG16402
Drosophila erecta
FBgn0108634
I
0.824
PAX6
Monodelphis domestica
ENSMODG00000009611
I
0.824
ENSCING00000006503
Ciona intestinalis
ENSCING00000006503
I
0.819
SMU15027897
Schmidtea mediterranea
SMU15027897
I
0.819
ENSCSAVG00000007987
Ciona savignyi
ENSCSAVG00000007987
I
0.819
CGI_10027695
Crassostrea gigas
CGI_10027695
I
0.819
ENSTNIG00000002471
Tetraodon nigroviridis
ENSTNIG00000002471
I
0.813
GD24416
Drosophila simulans
FBgn0195753
I
0.813
ISCW021772
Ixodes scapularis
ISCW021772
I
0.812
HelroG80374
Helobdella robusta
HelroG80374
I
0.802
T265_09221
Opisthorchis viverrini
T265_09221
I
0.802
ACHR009845
Anopheles christyi
ACHR009845
I
0.801
ASTEI06205
Anopheles stephensi
ASTEI06205
I
0.801
AMIN002132
Anopheles minimus
AMIN002132
I
0.801
AFUN011570
Anopheles funestus
AFUN011570
I
0.801
AATE014626
Anopheles atroparvus
AATE014626
I
0.801
ADIR000973
Anopheles dirus
ADIR000973
I
0.801
ASIS012967
Anopheles sinensis
ASIS012967
I
0.797
AQUA008308
Anopheles quadriannulatus
AQUA008308
I
0.797
ASTEI06200
Anopheles stephensi
ASTEI06200
I
0.797
Smp_160670
Schistosoma mansoni
Smp_160670
I
0.797
AGAP000063
Anopheles gambiae
AGAP000063
I
0.797
AARA001115
Anopheles arabiensis
AARA001115
I
0.797
AMIN002127
Anopheles minimus
AMIN002127
I
0.797
AALB006354
Anopheles albimanus
AALB006354
I
0.797
AMEC021831
Anopheles melas
AMEC021831
I
0.791
Ogr12767
Ophisaurus gracilis
Ogr12767
I
0.791
AAEL002321
Aedes aegypti
AAEL002321
I
0.791
AFUN011575
Anopheles funestus
AFUN011575
I
0.791
ADAC001560
Anopheles darlingi
ADAC001560
I
0.788
SMTD_0000837201
Schistosoma mattheei
SMTD_0000837201
I
0.786
A_05170
Schistosoma haematobium
A_05170
I
0.786
EFV57892
Trichinella spiralis
EFV57892
I
0.786
ADAC003449
Anopheles darlingi
ADAC003449
I
0.784
AFAF009619
Anopheles farauti
AFAF009619
I
0.784
csin101119
Clonorchis sinensis
csin101119
I
0.783
ACHR008920
Anopheles christyi
ACHR008920
I
0.782
Smp_170750
Schistosoma mansoni
Smp_170750
I
0.780
Afo_R014630
Aptenodytes forsteri
Afo_R014630
I
0.776
PAX6
Pan troglodytes
ENSPTRG00000003474
I
0.776
D917_00854
Trichinella nativa
D917_00854
I
0.774
ASIS012617
Anopheles sinensis
ASIS012617
I
0.768
T265_14971
Opisthorchis viverrini
T265_14971
I
0.768
CpipJ_CPIJ006398
Culex pipiens
CpipJ_CPIJ006398
I
0.764
CpipJ_CPIJ006390
Culex pipiens
CpipJ_CPIJ006390
I
0.764
CPIJ006390
Culex quinquefasciatus
CPIJ006390
I
0.764
CPIJ006398
Culex quinquefasciatus
CPIJ006398
I
0.764
ACUA021227
Anopheles culicifacies
ACUA021227
I
0.764
ENSTSYG00000011965
Tarsius syrichta
ENSTSYG00000011965
I
0.761
ACUA016154
Anopheles culicifacies
ACUA016154
I
0.758
AALB006643
Anopheles albimanus
AALB006643
I
0.758
AEPI005803
Anopheles epiroticus
AEPI005803
I
0.758
D915_07175
Fasciola hepatica
D915_07175
I
0.758
MCINX016249
Melitaea cinxia
MCINX016249
I
0.758
AGAP000067
Anopheles gambiae
AGAP000067
I
0.753
MCOS_0000220101
Mesocestoides corti
MCOS_0000220101
I
0.753
AQUA008313
Anopheles quadriannulatus
AQUA008313
I
0.753
AMEM002691
Anopheles merus
AMEM002691
I
0.753
AMEC013051
Anopheles melas
AMEC013051
I
0.753
AEPI005798
Anopheles epiroticus
AEPI005798
I
0.753
HelroG173449
Helobdella robusta
HelroG173449
I
0.753
AARA001110
Anopheles arabiensis
AARA001110
I
0.753
AFAF017899
Anopheles farauti
AFAF017899
I
0.753
tetur09g00660
Tetranychus urticae
tetur09g00660
I
0.747
ISCW006352
Ixodes scapularis
ISCW006352
I
0.747
csin110224
Clonorchis sinensis
csin110224
I
0.736
ADIR000968
Anopheles dirus
ADIR000968
I
0.721
fgenesh2_pg.scaffold_199000043
Branchiostoma floridae
fgenesh2_pg.scaffold_199000043
I
0.715
NEMVEDRAFT_v1g239535
Nematostella vectensis
NEMVEDRAFT_v1g239535
I
0.703
fgenesh2_pg.scaffold_23000118
Branchiostoma floridae
fgenesh2_pg.scaffold_23000118
I
0.701