SHN3 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT5G25390 T000518_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY

RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.729 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G25390.1 AP2 5 53
AT5G25390.2 AP2 5 56

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.805
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.753
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.753
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.743
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.740
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.740
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.737
Cla021283 Citrullus lanatus Cla021283 I 0.737
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.736
29848.m004632 Ricinus communis 29848.m004632 I 0.736
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.736
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.736
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.736
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.736
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.736
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.736
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.736
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.736
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.736
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.736
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.736
MDP0000178263 Malus domestica MDP0000178263 I 0.735
TCM_037007 Theobroma cacao TCM_037007 I 0.735
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.735
Ca_01764 Cicer arietinum Ca_01764 I 0.735
MDP0000287350 Malus domestica MDP0000287350 I 0.735
Pm004616 Prunus mume Pm004616 I 0.735
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.732
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.730
Ca_09050 Cicer arietinum Ca_09050 I 0.730
Bra008985 Brassica rapa Bra008985 I 0.729
SHN2 Arabidopsis thaliana AT5G11190 D 0.729
Bo9g171490 Brassica oleracea Bo9g171490 I 0.729
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.729
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.729
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.729
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.729
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.729
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.727
Bra036543 Brassica rapa Bra036543 I 0.723
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.722
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.722
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.722
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.720
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.719
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.718
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.715
Bo9g011380 Brassica oleracea Bo9g011380 I 0.713
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.700
mgf017744m Mimulus guttatus mgf017744m I 0.700
Bo7g096000 Brassica oleracea Bo7g096000 N 0.683
Eucgr.C04221 Eucalyptus grandis Eucgr.C04221 I 0.678