CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf017744m
(
Mimulus guttatus
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
mgf017744m
T007372_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.751
0.843
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf017744m
AP2
6
57
NKFKGVRQRQWGSWVSEIRHPLLKKRIWLGTFETAVAAARAYDEAAILMSGQ
Links
Other
AP2
family TFs
Other
Mimulus guttatus
TFs
50 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
evm.TU.supercontig_259.2
Carica papaya
evm.TU.supercontig_259.2
I
0.760
29848.m004632
Ricinus communis
29848.m004632
I
0.758
cassava10120.m1
Manihot esculenta
cassava10120.m1
I
0.758
Pm004616
Prunus mume
Pm004616
I
0.758
Ca_01764
Cicer arietinum
Ca_01764
I
0.758
PRUPE_ppa023908mg
Prunus persica
PRUPE_ppa023908mg
I
0.758
TCM_037007
Theobroma cacao
TCM_037007
I
0.758
Gorai.004G292600
Gossypium raimondii
Gorai.004G292600
I
0.758
SapurV1A.0192s0020
Salix purpurea
SapurV1A.0192s0020
I
0.758
LjSGA_019003.1
Lotus japonicus
LjSGA_019003.1
I
0.758
MDP0000287350
Malus domestica
MDP0000287350
I
0.758
MDP0000178263
Malus domestica
MDP0000178263
I
0.758
Gorai.010G114800
Gossypium raimondii
Gorai.010G114800
I
0.758
POPTR_0018s01680
Populus trichocarpa
POPTR_0018s01680
I
0.758
cassava30505.valid.m1
Manihot esculenta
cassava30505.valid.m1
I
0.758
GLYMA06G07240
Glycine max
GLYMA06G07240
I
0.758
MTR_3g107380
Medicago truncatula
MTR_3g107380
I
0.758
GLYMA04G07140
Glycine max
GLYMA04G07140
I
0.758
POPTR_0006s26990
Populus trichocarpa
POPTR_0006s26990
I
0.758
GLYMA17G31900
Glycine max
GLYMA17G31900
I
0.758
MTR_1g012470
Medicago truncatula
MTR_1g012470
I
0.756
Ca_09050
Cicer arietinum
Ca_09050
I
0.756
gene11636-v1.0-hybrid
Fragaria vesca
gene11636-v1.0-hybrid
I
0.754
Ciclev10009526m.g
Citrus clementina
Ciclev10009526m.g
I
0.754
orange1.1g028913m.g
Citrus sinensis
orange1.1g028913m.g
I
0.754
SHN2
Arabidopsis thaliana
AT5G11190
D
0.751
Bra008985
Brassica rapa
Bra008985
I
0.751
Bo9g171490
Brassica oleracea
Bo9g171490
I
0.751
Carubv10003042m.g
Capsella rubella
Carubv10003042m.g
I
0.751
Carubv10003050m.g
Capsella rubella
Carubv10003050m.g
I
0.751
Bostr.23997s0014
Boechera stricta
Bostr.23997s0014
I
0.751
SHN3
Arabidopsis lyrata
Al_scaffold_0006_1028
I
0.751
Gorai.001G033200
Gossypium raimondii
Gorai.001G033200
I
0.750
Carubv10002040m.g
Capsella rubella
Carubv10002040m.g
I
0.745
Cagra.1110s0005
Capsella grandiflora
Cagra.1110s0005
I
0.745
VIT_04s0008g05440
Vitis vinifera
VIT_04s0008g05440
I
0.743
SapurV1A.0043s0690
Salix purpurea
SapurV1A.0043s0690
I
0.740
Bostr.29827s0278
Boechera stricta
Bostr.29827s0278
I
0.735
Lus10002912.g
Linum usitatissimum
Lus10002912.g
I
0.719
Lus10002015.g
Linum usitatissimum
Lus10002015.g
I
0.719
PGSC0003DMG400030228
Solanum tuberosum
PGSC0003DMG400030228
I
0.717
Gorai.011G082900
Gossypium raimondii
Gorai.011G082900
I
0.704
SHN2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002026
I
0.703
SHN3
Arabidopsis thaliana
AT5G25390
I
0.700
Lus10019414.g
Linum usitatissimum
Lus10019414.g
I
0.698
cassava40012.m1
Manihot esculenta
cassava40012.m1
I
0.694
Thhalv10015363m.g
Eutrema salsugineum
Thhalv10015363m.g
I
0.691
Cucsa.310360
Cucumis sativus
Cucsa.310360
I
0.681
Cla021283
Citrullus lanatus
Cla021283
I
0.681
Bra036543
Brassica rapa
Bra036543
I
0.680