Bra036543 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra036543 T001239_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SHN2
M06660_2.00 		Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH		 Dap-seq
OMalley et al.(2016)
SHN3_col_a 		0.709 0.902
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.688 0.843
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036543.1-P AP2 5 56

Links

Other AP2 family TFs
Other Brassica rapa TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10005514m.g Eutrema salsugineum Thhalv10005514m.g I 0.799
Bo9g011380 Brassica oleracea Bo9g011380 I 0.794
Lus10019414.g Linum usitatissimum Lus10019414.g I 0.778
Gorai.011G082900 Gossypium raimondii Gorai.011G082900 I 0.772
Bo7g096000 Brassica oleracea Bo7g096000 N 0.764
PGSC0003DMG400030228 Solanum tuberosum PGSC0003DMG400030228 I 0.757
Cucsa.310360 Cucumis sativus Cucsa.310360 I 0.752
Cla021283 Citrullus lanatus Cla021283 I 0.752
Eucgr.C04221 Eucalyptus grandis Eucgr.C04221 I 0.726
SHN3 Arabidopsis thaliana AT5G25390 I 0.723
Carubv10002040m.g Capsella rubella Carubv10002040m.g I 0.723
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I 0.723
VIT_11s0016g05340 Vitis vinifera VIT_11s0016g05340 I 0.722
Cla016967 Citrullus lanatus Cla016967 I 0.722
Cucsa.132120 Cucumis sativus Cucsa.132120 I 0.722
29841.m002846 Ricinus communis 29841.m002846 I 0.722
POPTR_0006s06870 Populus trichocarpa POPTR_0006s06870 I 0.721
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I 0.720
SHN2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002026 I 0.720
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I 0.720
Eucgr.C01178 Eucalyptus grandis Eucgr.C01178 I 0.719
cassava34153.m1 Manihot esculenta cassava34153.m1 I 0.719
Ciclev10009447m.g Citrus clementina Ciclev10009447m.g I 0.719
cassava24223.valid.m1 Manihot esculenta cassava24223.valid.m1 I 0.719
chr4.LjT07P17.60.nc Lotus japonicus chr4.LjT07P17.60.nc I 0.719
TCM_038081 Theobroma cacao TCM_038081 I 0.719
POPTR_0018s13130 Populus trichocarpa POPTR_0018s13130 I 0.719
Ca_06673 Cicer arietinum Ca_06673 I 0.719
Cla012435 Citrullus lanatus Cla012435 I 0.719
28320.m001139 Ricinus communis 28320.m001139 I 0.719
Gorai.001G042300 Gossypium raimondii Gorai.001G042300 I 0.719
MTR_4g114570 Medicago truncatula MTR_4g114570 I 0.719
SapurV1A.0034s0630 Salix purpurea SapurV1A.0034s0630 I 0.719
GLYMA13G23570 Glycine max GLYMA13G23570 I 0.719
SapurV1A.1759s0040 Salix purpurea SapurV1A.1759s0040 I 0.719
SapurV1A.0199s0350 Salix purpurea SapurV1A.0199s0350 I 0.719
Lus10030097.g Linum usitatissimum Lus10030097.g I 0.719
orange1.1g027896m.g Citrus sinensis orange1.1g027896m.g I 0.719
GLYMA17G12330 Glycine max GLYMA17G12330 I 0.719
Lus10005716.g Linum usitatissimum Lus10005716.g I 0.719
Gorai.009G017500 Gossypium raimondii Gorai.009G017500 I 0.719
GRMZM2G106591 Zea mays GRMZM2G106591 I 0.719
GLYMA04G19650 Glycine max GLYMA04G19650 I 0.718
GLYMA06G29110 Glycine max GLYMA06G29110 I 0.718
Solyc12g009490.1 Solanum lycopersicum Solyc12g009490.1 I 0.716
Pavir.Aa02977 Panicum virgatum Pavir.Aa02977 I 0.716
Traes_6AS_8E7166D79 Triticum aestivum Traes_6AS_8E7166D79 I 0.716
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I 0.716
Si008394m.g Setaria italica Si008394m.g I 0.716
PRUPE_ppa010601mg Prunus persica PRUPE_ppa010601mg I 0.716
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I 0.716
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I 0.716
Traes_6DS_E6A0BE6CD Triticum aestivum Traes_6DS_E6A0BE6CD I 0.716
Sb10g023600 Sorghum bicolor Sb10g023600 I 0.716
Sb04g006970 Sorghum bicolor Sb04g006970 I 0.716
Pavir.Ab00737 Panicum virgatum Pavir.Ab00737 I 0.716
Pm027542 Prunus mume Pm027542 I 0.716
Pavir.Da00422 Panicum virgatum Pavir.Da00422 I 0.716
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I 0.716
Pavir.Db01224 Panicum virgatum Pavir.Db01224 I 0.716
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I 0.716
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I 0.716
cassava11389.m1 Manihot esculenta cassava11389.m1 I 0.716
MDP0000124316 Malus domestica MDP0000124316 I 0.716
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I 0.716
29848.m004632 Ricinus communis 29848.m004632 I 0.716
cassava10120.m1 Manihot esculenta cassava10120.m1 I 0.716
MDP0000290880 Malus domestica MDP0000290880 I 0.716
TRIUR3_22374 Triticum urartu TRIUR3_22374 I 0.716
GSMUA_Achr10G27000_001 Musa acuminata GSMUA_Achr10G27000_001 I 0.716
GSMUA_Achr7G10160_001 Musa acuminata GSMUA_Achr7G10160_001 I 0.716
ONIVA02G09300 Oryza nivara ONIVA02G09300 I 0.716
GRMZM2G085678 Zea mays GRMZM2G085678 I 0.716
GLYMA04G07140 Glycine max GLYMA04G07140 I 0.716
GLYMA17G31900 Glycine max GLYMA17G31900 I 0.716
LPERR02G06710 Leersia perrieri LPERR02G06710 I 0.716
OLONG_004398 Oryza longistaminata OLONG_004398 I 0.716
OB02G17060 Oryza brachyantha OB02G17060 I 0.716
MTR_3g107380 Medicago truncatula MTR_3g107380 I 0.716
OBART02G07740 Oryza barthii OBART02G07740 I 0.716
MLOC_12747 Hordeum vulgare MLOC_12747 I 0.716
SHN1 Populus trichocarpa POPTR_0003s02750 I 0.716
OGLUM02G07820 Oryza glumaepatula OGLUM02G07820 I 0.716
OPUNC02G06960 Oryza punctata OPUNC02G06960 I 0.716
GLYMA06G07240 Glycine max GLYMA06G07240 I 0.716
ORUFI03G26280 Oryza rufipogon ORUFI03G26280 I 0.716
OS02G0202000 Oryza sativa OS02G0202000 I 0.716
BGIOSGA007748 Oryza indica BGIOSGA007748 I 0.716
F775_28212 Aegilops tauschii F775_28212 I 0.716
BRADI3G07450 Brachypodium distachyon BRADI3G07450 I 0.716
ORGLA02G0073000 Oryza glaberrima ORGLA02G0073000 I 0.716
PGSC0003DMG400002889 Solanum tuberosum PGSC0003DMG400002889 I 0.716
MDP0000287350 Malus domestica MDP0000287350 I 0.715
Ca_01764 Cicer arietinum Ca_01764 I 0.715
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I 0.715
TCM_037007 Theobroma cacao TCM_037007 I 0.715
Pm004616 Prunus mume Pm004616 I 0.715
MDP0000178263 Malus domestica MDP0000178263 I 0.715
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I 0.713
LjT09F21.30.nc Lotus japonicus LjT09F21.30.nc I 0.713
mgf005189m Mimulus guttatus mgf005189m I 0.713
AMTR_s00025p00249140 Amborella trichopoda AMTR_s00025p00249140 I 0.713
GSMUA_Achr9G28540_001 Musa acuminata GSMUA_Achr9G28540_001 I 0.713
MDP0000873258 Malus domestica MDP0000873258 I 0.713
MLOC_59305 Hordeum vulgare MLOC_59305 I 0.713
evm.TU.supercontig_10.254 Carica papaya evm.TU.supercontig_10.254 I 0.713
BRADI1G36590 Brachypodium distachyon BRADI1G36590 I 0.713
BGIOSGA020923 Oryza indica BGIOSGA020923 I 0.713
LPERR06G17010 Leersia perrieri LPERR06G17010 I 0.713
TCM_027157 Theobroma cacao TCM_027157 I 0.713
OLONG_016936 Oryza longistaminata OLONG_016936 I 0.713
ORUFI06G21790 Oryza rufipogon ORUFI06G21790 I 0.713
OMERI06G20980 Oryza meridionalis OMERI06G20980 I 0.713
Ca_13435 Cicer arietinum Ca_13435 I 0.713
ONIVA06G24150 Oryza nivara ONIVA06G24150 I 0.713
ORGLA06G0167900 Oryza glaberrima ORGLA06G0167900 I 0.713
OPUNC06G18570 Oryza punctata OPUNC06G18570 I 0.713
OGLUM06G21440 Oryza glumaepatula OGLUM06G21440 I 0.713
Traes_7DL_E1D7A51C8 Triticum aestivum Traes_7DL_E1D7A51C8 I 0.713
OS06G0604000 Oryza sativa OS06G0604000 I 0.713
OB06G28040 Oryza brachyantha OB06G28040 I 0.713
MTR_4g010640 Medicago truncatula MTR_4g010640 I 0.713
OBART06G20370 Oryza barthii OBART06G20370 I 0.713
PRUPE_ppa024826mg Prunus persica PRUPE_ppa024826mg I 0.712
MDP0000430870 Malus domestica MDP0000430870 I 0.712
GLYMA08G22590 Glycine max GLYMA08G22590 I 0.712
MDP0000172065 Malus domestica MDP0000172065 I 0.712
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I 0.712
Ca_09050 Cicer arietinum Ca_09050 I 0.710
MTR_1g012470 Medicago truncatula MTR_1g012470 I 0.710
Carubv10003042m.g Capsella rubella Carubv10003042m.g I 0.709
Carubv10003050m.g Capsella rubella Carubv10003050m.g I 0.709
Bo9g171490 Brassica oleracea Bo9g171490 I 0.709
Ca_02880 Cicer arietinum Ca_02880 I 0.709
Bra008985 Brassica rapa Bra008985 I 0.709
MTR_2g103700 Medicago truncatula MTR_2g103700 I 0.709
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I 0.709
Aquca_006_00004 Aquilegia coerulea Aquca_006_00004 I 0.709
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I 0.709
SHN2 Arabidopsis thaliana AT5G11190 D 0.709
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I 0.709
GLYMA15G01140 Glycine max GLYMA15G01140 I 0.708
Lus10009480.g Linum usitatissimum Lus10009480.g I 0.708
GLYMA07G03500 Glycine max GLYMA07G03500 I 0.706
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I 0.706
Cucsa.292670 Cucumis sativus Cucsa.292670 I 0.705
Ciclev10027305m.g Citrus clementina Ciclev10027305m.g I 0.703
SapurV1A.0198s0340 Salix purpurea SapurV1A.0198s0340 N 0.703
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I 0.702
Lus10041023.g Linum usitatissimum Lus10041023.g I 0.700
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I 0.698
gene31040-v1.0-hybrid Fragaria vesca gene31040-v1.0-hybrid I 0.695
Cla012914 Citrullus lanatus Cla012914 I 0.695
Lus10002912.g Linum usitatissimum Lus10002912.g I 0.693
Lus10002015.g Linum usitatissimum Lus10002015.g I 0.693
LjSGA_040388.1 Lotus japonicus LjSGA_040388.1 I 0.692
Carubv10010317m.g Capsella rubella Carubv10010317m.g I 0.688
Cagra.2238s0086 Capsella grandiflora Cagra.2238s0086 I 0.688
Bostr.7128s0149 Boechera stricta Bostr.7128s0149 I 0.688
Thhalv10008845m.g Eutrema salsugineum Thhalv10008845m.g I 0.688
PGSC0003DMG400000636 Solanum tuberosum PGSC0003DMG400000636 I 0.688
WIN1 Arabidopsis thaliana AT1G15360 D 0.688
SHN1 Arabidopsis lyrata fgenesh2_kg.1__1687__AT1G15360.1 I 0.688
GSMUA_Achr6G05210_001 Musa acuminata GSMUA_Achr6G05210_001 I 0.688
Solyc03g116610.2 Solanum lycopersicum Solyc03g116610.2 I 0.688
Bra026140 Brassica rapa Bra026140 I 0.688
Bra016663 Brassica rapa Bra016663 I 0.688
Bo8g066410 Brassica oleracea Bo8g066410 I 0.688
SHN1 Vitis vinifera VIT_09s0002g06750 I 0.683
SapurV1A.0198s0350 Salix purpurea SapurV1A.0198s0350 N 0.683
Lus10005343.g Linum usitatissimum Lus10005343.g I 0.683
GSMUA_Achr10G24170_001 Musa acuminata GSMUA_Achr10G24170_001 I 0.682
mgf017744m Mimulus guttatus mgf017744m I 0.680