CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10019414.g
(
Linum usitatissimum
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Lus10019414.g
T008826_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SHN2
M06660_2.00
Arabidopsis thaliana
DCCDCCRCCDCCDCCRCCRCY
RGYGGYGGHGGHGGYGGHGGH
Dap-seq
OMalley et al.(2016)
SHN3_col_a
0.728
0.902
WIN1
M01603_2.00
Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB
PBM
Weirauch et al.(2014)
pTH7566
0.707
0.902
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10019414
AP2
5
56
RKFRGVRQRQWGSWVSEIRHPLLKRRIWLGTFETAEEAARAYDQAAILMSGR
Links
Other
AP2
family TFs
Other
Linum usitatissimum
TFs
174 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.011G082900
Gossypium raimondii
Gorai.011G082900
I
0.797
Bra036543
Brassica rapa
Bra036543
I
0.778
PGSC0003DMG400030228
Solanum tuberosum
PGSC0003DMG400030228
I
0.778
Thhalv10005514m.g
Eutrema salsugineum
Thhalv10005514m.g
I
0.773
Bo9g011380
Brassica oleracea
Bo9g011380
I
0.768
Cla021283
Citrullus lanatus
Cla021283
I
0.758
Cucsa.310360
Cucumis sativus
Cucsa.310360
I
0.758
POPTR_0006s06870
Populus trichocarpa
POPTR_0006s06870
I
0.746
GLYMA06G29110
Glycine max
GLYMA06G29110
I
0.745
GLYMA04G19650
Glycine max
GLYMA04G19650
I
0.745
Eucgr.C01178
Eucalyptus grandis
Eucgr.C01178
I
0.744
GLYMA13G23570
Glycine max
GLYMA13G23570
I
0.744
Gorai.001G042300
Gossypium raimondii
Gorai.001G042300
I
0.744
TCM_038081
Theobroma cacao
TCM_038081
I
0.744
Ciclev10009447m.g
Citrus clementina
Ciclev10009447m.g
I
0.744
POPTR_0018s13130
Populus trichocarpa
POPTR_0018s13130
I
0.744
28320.m001139
Ricinus communis
28320.m001139
I
0.744
cassava34153.m1
Manihot esculenta
cassava34153.m1
I
0.744
Ca_06673
Cicer arietinum
Ca_06673
I
0.744
MTR_4g114570
Medicago truncatula
MTR_4g114570
I
0.744
GLYMA17G12330
Glycine max
GLYMA17G12330
I
0.744
cassava24223.valid.m1
Manihot esculenta
cassava24223.valid.m1
I
0.744
Lus10030097.g
Linum usitatissimum
Lus10030097.g
I
0.744
chr4.LjT07P17.60.nc
Lotus japonicus
chr4.LjT07P17.60.nc
I
0.744
Gorai.009G017500
Gossypium raimondii
Gorai.009G017500
I
0.744
orange1.1g027896m.g
Citrus sinensis
orange1.1g027896m.g
I
0.744
Lus10005716.g
Linum usitatissimum
Lus10005716.g
I
0.744
SapurV1A.0034s0630
Salix purpurea
SapurV1A.0034s0630
I
0.744
29841.m002846
Ricinus communis
29841.m002846
I
0.741
Cucsa.132120
Cucumis sativus
Cucsa.132120
I
0.741
VIT_11s0016g05340
Vitis vinifera
VIT_11s0016g05340
I
0.741
Cla016967
Citrullus lanatus
Cla016967
I
0.741
PRUPE_ppa024826mg
Prunus persica
PRUPE_ppa024826mg
I
0.739
GLYMA08G22590
Glycine max
GLYMA08G22590
I
0.739
OLONG_016936
Oryza longistaminata
OLONG_016936
I
0.738
OGLUM06G21440
Oryza glumaepatula
OGLUM06G21440
I
0.738
OMERI06G20980
Oryza meridionalis
OMERI06G20980
I
0.738
OBART06G20370
Oryza barthii
OBART06G20370
I
0.738
Traes_7DL_E1D7A51C8
Triticum aestivum
Traes_7DL_E1D7A51C8
I
0.738
TCM_027157
Theobroma cacao
TCM_027157
I
0.738
OS06G0604000
Oryza sativa
OS06G0604000
I
0.738
LjT09F21.30.nc
Lotus japonicus
LjT09F21.30.nc
I
0.738
AMTR_s00025p00249140
Amborella trichopoda
AMTR_s00025p00249140
I
0.738
ORUFI06G21790
Oryza rufipogon
ORUFI06G21790
I
0.738
ORGLA06G0167900
Oryza glaberrima
ORGLA06G0167900
I
0.738
OPUNC06G18570
Oryza punctata
OPUNC06G18570
I
0.738
OB06G28040
Oryza brachyantha
OB06G28040
I
0.738
ONIVA06G24150
Oryza nivara
ONIVA06G24150
I
0.738
BGIOSGA020923
Oryza indica
BGIOSGA020923
I
0.738
evm.TU.supercontig_10.254
Carica papaya
evm.TU.supercontig_10.254
I
0.738
BRADI1G36590
Brachypodium distachyon
BRADI1G36590
I
0.738
MTR_4g010640
Medicago truncatula
MTR_4g010640
I
0.738
MDP0000873258
Malus domestica
MDP0000873258
I
0.738
mgf005189m
Mimulus guttatus
mgf005189m
I
0.738
LPERR06G17010
Leersia perrieri
LPERR06G17010
I
0.738
MLOC_59305
Hordeum vulgare
MLOC_59305
I
0.738
Ca_13435
Cicer arietinum
Ca_13435
I
0.738
Bo7g096000
Brassica oleracea
Bo7g096000
N
0.738
Cla012435
Citrullus lanatus
Cla012435
I
0.737
Lus10009480.g
Linum usitatissimum
Lus10009480.g
I
0.736
Sb10g023600
Sorghum bicolor
Sb10g023600
I
0.735
Sb04g006970
Sorghum bicolor
Sb04g006970
I
0.735
PRUPE_ppa010601mg
Prunus persica
PRUPE_ppa010601mg
I
0.735
Pavir.Da00422
Panicum virgatum
Pavir.Da00422
I
0.735
Traes_6AS_8E7166D79
Triticum aestivum
Traes_6AS_8E7166D79
I
0.735
TRIUR3_22374
Triticum urartu
TRIUR3_22374
I
0.735
Pm027542
Prunus mume
Pm027542
I
0.735
Pavir.Db01224
Panicum virgatum
Pavir.Db01224
I
0.735
Pavir.Aa02977
Panicum virgatum
Pavir.Aa02977
I
0.735
Pavir.Ab00737
Panicum virgatum
Pavir.Ab00737
I
0.735
Si008394m.g
Setaria italica
Si008394m.g
I
0.735
Traes_6DS_E6A0BE6CD
Triticum aestivum
Traes_6DS_E6A0BE6CD
I
0.735
OBART02G07740
Oryza barthii
OBART02G07740
I
0.735
OB02G17060
Oryza brachyantha
OB02G17060
I
0.735
OLONG_004398
Oryza longistaminata
OLONG_004398
I
0.735
BRADI3G07450
Brachypodium distachyon
BRADI3G07450
I
0.735
ONIVA02G09300
Oryza nivara
ONIVA02G09300
I
0.735
GRMZM2G085678
Zea mays
GRMZM2G085678
I
0.735
BGIOSGA007748
Oryza indica
BGIOSGA007748
I
0.735
GSMUA_Achr7G10160_001
Musa acuminata
GSMUA_Achr7G10160_001
I
0.735
GSMUA_Achr10G27000_001
Musa acuminata
GSMUA_Achr10G27000_001
I
0.735
LPERR02G06710
Leersia perrieri
LPERR02G06710
I
0.735
MLOC_12747
Hordeum vulgare
MLOC_12747
I
0.735
OPUNC02G06960
Oryza punctata
OPUNC02G06960
I
0.735
OGLUM02G07820
Oryza glumaepatula
OGLUM02G07820
I
0.735
F775_28212
Aegilops tauschii
F775_28212
I
0.735
ORUFI03G26280
Oryza rufipogon
ORUFI03G26280
I
0.735
OS02G0202000
Oryza sativa
OS02G0202000
I
0.735
ORGLA02G0073000
Oryza glaberrima
ORGLA02G0073000
I
0.735
MDP0000287350
Malus domestica
MDP0000287350
I
0.734
TCM_037007
Theobroma cacao
TCM_037007
I
0.734
MTR_2g103700
Medicago truncatula
MTR_2g103700
I
0.734
PRUPE_ppa023908mg
Prunus persica
PRUPE_ppa023908mg
I
0.734
Pm004616
Prunus mume
Pm004616
I
0.734
MDP0000178263
Malus domestica
MDP0000178263
I
0.734
Ca_02880
Cicer arietinum
Ca_02880
I
0.734
Ca_01764
Cicer arietinum
Ca_01764
I
0.734
GLYMA04G07140
Glycine max
GLYMA04G07140
I
0.733
cassava30505.valid.m1
Manihot esculenta
cassava30505.valid.m1
I
0.733
GLYMA07G03500
Glycine max
GLYMA07G03500
I
0.733
Gorai.010G114800
Gossypium raimondii
Gorai.010G114800
I
0.733
Gorai.004G292600
Gossypium raimondii
Gorai.004G292600
I
0.733
POPTR_0018s01680
Populus trichocarpa
POPTR_0018s01680
I
0.733
GLYMA17G31900
Glycine max
GLYMA17G31900
I
0.733
GLYMA06G07240
Glycine max
GLYMA06G07240
I
0.733
SapurV1A.0192s0020
Salix purpurea
SapurV1A.0192s0020
I
0.733
29848.m004632
Ricinus communis
29848.m004632
I
0.733
LjSGA_019003.1
Lotus japonicus
LjSGA_019003.1
I
0.733
MTR_3g107380
Medicago truncatula
MTR_3g107380
I
0.733
Ca_09050
Cicer arietinum
Ca_09050
I
0.733
MTR_1g012470
Medicago truncatula
MTR_1g012470
I
0.733
cassava10120.m1
Manihot esculenta
cassava10120.m1
I
0.733
POPTR_0006s26990
Populus trichocarpa
POPTR_0006s26990
I
0.733
GSMUA_Achr9G28540_001
Musa acuminata
GSMUA_Achr9G28540_001
I
0.731
gene11636-v1.0-hybrid
Fragaria vesca
gene11636-v1.0-hybrid
I
0.731
Eucgr.C04221
Eucalyptus grandis
Eucgr.C04221
I
0.731
orange1.1g028913m.g
Citrus sinensis
orange1.1g028913m.g
I
0.730
Gorai.001G033200
Gossypium raimondii
Gorai.001G033200
I
0.730
Ciclev10009526m.g
Citrus clementina
Ciclev10009526m.g
I
0.730
SHN3
Arabidopsis lyrata
Al_scaffold_0006_1028
I
0.728
Ciclev10027305m.g
Citrus clementina
Ciclev10027305m.g
I
0.728
SHN1
Populus trichocarpa
POPTR_0003s02750
I
0.728
PGSC0003DMG400002889
Solanum tuberosum
PGSC0003DMG400002889
I
0.728
Solyc12g009490.1
Solanum lycopersicum
Solyc12g009490.1
I
0.728
SHN2
Arabidopsis thaliana
AT5G11190
D
0.728
Carubv10003042m.g
Capsella rubella
Carubv10003042m.g
I
0.728
Bostr.23997s0014
Boechera stricta
Bostr.23997s0014
I
0.728
Aquca_006_00004
Aquilegia coerulea
Aquca_006_00004
I
0.728
Carubv10003050m.g
Capsella rubella
Carubv10003050m.g
I
0.728
Bra008985
Brassica rapa
Bra008985
I
0.728
Bo9g171490
Brassica oleracea
Bo9g171490
I
0.728
MDP0000430870
Malus domestica
MDP0000430870
I
0.726
MDP0000172065
Malus domestica
MDP0000172065
I
0.726
SapurV1A.0199s0350
Salix purpurea
SapurV1A.0199s0350
I
0.725
GRMZM2G106591
Zea mays
GRMZM2G106591
I
0.725
cassava11389.m1
Manihot esculenta
cassava11389.m1
I
0.725
SapurV1A.1759s0040
Salix purpurea
SapurV1A.1759s0040
I
0.725
SHN2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_6002026
I
0.723
evm.TU.supercontig_259.2
Carica papaya
evm.TU.supercontig_259.2
I
0.723
SHN3
Arabidopsis thaliana
AT5G25390
I
0.720
Carubv10002040m.g
Capsella rubella
Carubv10002040m.g
I
0.720
Cagra.1110s0005
Capsella grandiflora
Cagra.1110s0005
I
0.720
Cucsa.292670
Cucumis sativus
Cucsa.292670
I
0.719
SapurV1A.0043s0690
Salix purpurea
SapurV1A.0043s0690
I
0.719
SapurV1A.0198s0340
Salix purpurea
SapurV1A.0198s0340
N
0.718
VIT_04s0008g05440
Vitis vinifera
VIT_04s0008g05440
I
0.718
Lus10041023.g
Linum usitatissimum
Lus10041023.g
I
0.715
Cla012914
Citrullus lanatus
Cla012914
I
0.713
LjSGA_040388.1
Lotus japonicus
LjSGA_040388.1
I
0.713
MDP0000290880
Malus domestica
MDP0000290880
I
0.712
MDP0000124316
Malus domestica
MDP0000124316
I
0.712
GLYMA15G01140
Glycine max
GLYMA15G01140
I
0.711
Bostr.29827s0278
Boechera stricta
Bostr.29827s0278
I
0.710
Solyc03g116610.2
Solanum lycopersicum
Solyc03g116610.2
I
0.707
Bo8g066410
Brassica oleracea
Bo8g066410
I
0.707
GSMUA_Achr6G05210_001
Musa acuminata
GSMUA_Achr6G05210_001
I
0.707
Thhalv10008845m.g
Eutrema salsugineum
Thhalv10008845m.g
I
0.707
Bra026140
Brassica rapa
Bra026140
I
0.707
gene31040-v1.0-hybrid
Fragaria vesca
gene31040-v1.0-hybrid
I
0.707
SHN1
Arabidopsis lyrata
fgenesh2_kg.1__1687__AT1G15360.1
I
0.707
WIN1
Arabidopsis thaliana
AT1G15360
D
0.707
Carubv10010317m.g
Capsella rubella
Carubv10010317m.g
I
0.707
Cagra.2238s0086
Capsella grandiflora
Cagra.2238s0086
I
0.707
Bra016663
Brassica rapa
Bra016663
I
0.707
PGSC0003DMG400000636
Solanum tuberosum
PGSC0003DMG400000636
I
0.707
Bostr.7128s0149
Boechera stricta
Bostr.7128s0149
I
0.707
SHN1
Vitis vinifera
VIT_09s0002g06750
I
0.702
GSMUA_Achr10G24170_001
Musa acuminata
GSMUA_Achr10G24170_001
I
0.700
mgf017744m
Mimulus guttatus
mgf017744m
I
0.698
Lus10002912.g
Linum usitatissimum
Lus10002912.g
I
0.698
Lus10005343.g
Linum usitatissimum
Lus10005343.g
I
0.698
Lus10002015.g
Linum usitatissimum
Lus10002015.g
I
0.698
SapurV1A.0198s0350
Salix purpurea
SapurV1A.0198s0350
N
0.698
Bo8g106100
Brassica oleracea
Bo8g106100
I
0.689