POPTR_0003s04920 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0003s04920 T004609_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q8LKX0_MAIZE
M09722_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DBF2_01
0.726 0.880
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA

TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.694 0.860
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN

NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.694 0.860
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH

DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.694 0.860
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD

HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.689 0.860
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.689 0.860
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH

DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.682 0.840
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN

NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.682 0.840
AT3G16280
M06618_2.00
Arabidopsis thaliana
NDNCACCGACANHN

NDNTGTCGGTGNHN
Dap-seq
OMalley et al.(2016)
AT3G16280_col_a
0.678 0.860
AT3G16280
M06619_2.00
Arabidopsis thaliana
BCACCGACAHWNNN

NNNWDTGTCGGTGV
Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a
0.678 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s04920.1 AP2 49 100

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
POPTR_0001s18800 Populus trichocarpa POPTR_0001s18800 I 0.802
SapurV1A.2848s0020 Salix purpurea SapurV1A.2848s0020 I 0.789
SapurV1A.0370s0130 Salix purpurea SapurV1A.0370s0130 I 0.789
SapurV1A.0805s0100 Salix purpurea SapurV1A.0805s0100 I 0.774
Cla015715 Citrullus lanatus Cla015715 I 0.764
evm.TU.supercontig_109.32 Carica papaya evm.TU.supercontig_109.32 I 0.747
Lus10038270.g Linum usitatissimum Lus10038270.g I 0.743
Pavir.Aa00834 Panicum virgatum Pavir.Aa00834 I 0.743
Cucsa.038760 Cucumis sativus Cucsa.038760 I 0.740
Cla012859 Citrullus lanatus Cla012859 I 0.740
Lus10025834.g Linum usitatissimum Lus10025834.g I 0.739
Traes_1AL_88D49649D Triticum aestivum Traes_1AL_88D49649D I 0.738
Traes_1BL_E39CD252E Triticum aestivum Traes_1BL_E39CD252E I 0.738
F775_11989 Aegilops tauschii F775_11989 I 0.738
Cucsa.359390 Cucumis sativus Cucsa.359390 I 0.735
Cucsa.312570 Cucumis sativus Cucsa.312570 I 0.733
OMERI08G00520 Oryza meridionalis OMERI08G00520 I 0.732
ORGLA10G0136200 Oryza glaberrima ORGLA10G0136200 I 0.732
ONIVA10G21000 Oryza nivara ONIVA10G21000 I 0.732
OPUNC10G16830 Oryza punctata OPUNC10G16830 I 0.732
OGLUM10G18570 Oryza glumaepatula OGLUM10G18570 I 0.732
Cla023465 Citrullus lanatus Cla023465 I 0.729
GSMUA_Achr6G26280_001 Musa acuminata GSMUA_Achr6G26280_001 I 0.729
ONIVA04G19040 Oryza nivara ONIVA04G19040 I 0.727
ONIVA02G28960 Oryza nivara ONIVA02G28960 I 0.727
OMERI02G25900 Oryza meridionalis OMERI02G25900 I 0.727
OGLUM02G27010 Oryza glumaepatula OGLUM02G27010 I 0.727
OGLUM04G20750 Oryza glumaepatula OGLUM04G20750 I 0.727
OMERI04G17260 Oryza meridionalis OMERI04G17260 I 0.727
OS02G0656600 Oryza sativa OS02G0656600 I 0.727
Si010703m.g Setaria italica Si010703m.g I 0.727
Traes_2AL_45E6314EF Triticum aestivum Traes_2AL_45E6314EF I 0.727
Traes_2BL_593E1CCC2 Triticum aestivum Traes_2BL_593E1CCC2 I 0.727
Pavir.Ga01095 Panicum virgatum Pavir.Ga01095 I 0.727
Sb06g024530 Sorghum bicolor Sb06g024530 I 0.727
OS04G0549700 Oryza sativa OS04G0549700 I 0.727
OPUNC04G18500 Oryza punctata OPUNC04G18500 I 0.727
ORGLA02G0228000 Oryza glaberrima ORGLA02G0228000 I 0.727
ORGLA04G0178600 Oryza glaberrima ORGLA04G0178600 I 0.727
ORUFI04G22400 Oryza rufipogon ORUFI04G22400 I 0.727
Pavir.J17742 Panicum virgatum Pavir.J17742 I 0.727
OPUNC02G24210 Oryza punctata OPUNC02G24210 I 0.727
BGIOSGA016882 Oryza indica BGIOSGA016882 I 0.727
BRADI3G50620 Brachypodium distachyon BRADI3G50620 I 0.727
Si039427m.g Setaria italica Si039427m.g I 0.726
GRMZM5G889719 Zea mays GRMZM5G889719 I 0.726
Sb01g029065 Sorghum bicolor Sb01g029065 I 0.726
Q8LKX0_MAIZE Zea mays Q8LKX0_MAIZE D 0.726
Pavir.Ia02208 Panicum virgatum Pavir.Ia02208 I 0.726
MTR_7g046260 Medicago truncatula MTR_7g046260 I 0.725
SELMODRAFT_104978 Selaginella moellendorffii SELMODRAFT_104978 I 0.724
SELMODRAFT_125385 Selaginella moellendorffii SELMODRAFT_125385 I 0.724
GSMUA_Achr9G05860_001 Musa acuminata GSMUA_Achr9G05860_001 I 0.724
GSMUA_Achr10G14070_001 Musa acuminata GSMUA_Achr10G14070_001 I 0.723
GSMUA_Achr10G27680_001 Musa acuminata GSMUA_Achr10G27680_001 I 0.721
SELMODRAFT_71661 Selaginella moellendorffii SELMODRAFT_71661 I 0.721
SELMODRAFT_71659 Selaginella moellendorffii SELMODRAFT_71659 I 0.721
LPERR10G14320 Leersia perrieri LPERR10G14320 I 0.720
Solyc12g044390.1 Solanum lycopersicum Solyc12g044390.1 I 0.719
PGSC0003DMG400026461 Solanum tuberosum PGSC0003DMG400026461 I 0.719
GRMZM5G806839 Zea mays GRMZM5G806839 I 0.717
Traes_6DL_901793D6D Triticum aestivum Traes_6DL_901793D6D I 0.717
MLOC_75601 Hordeum vulgare MLOC_75601 I 0.717
GLYMA01G13410 Glycine max GLYMA01G13410 I 0.716
mgf022802m Mimulus guttatus mgf022802m I 0.713
Bo6g077080 Brassica oleracea Bo6g077080 I 0.713
Cla004187 Citrullus lanatus Cla004187 I 0.713
Bra003415 Brassica rapa Bra003415 I 0.713
BRADI3G33355 Brachypodium distachyon BRADI3G33355 I 0.712
BRADI1G38110 Brachypodium distachyon BRADI1G38110 I 0.712
ONIVA06G21640 Oryza nivara ONIVA06G21640 I 0.712
Si007144m.g Setaria italica Si007144m.g I 0.712
ORUFI06G19350 Oryza rufipogon ORUFI06G19350 I 0.712
F775_14820 Aegilops tauschii F775_14820 I 0.712
Traes_7DL_538583735 Triticum aestivum Traes_7DL_538583735 I 0.712
OMERI06G18780 Oryza meridionalis OMERI06G18780 I 0.712
Cucsa.121080 Cucumis sativus Cucsa.121080 I 0.712
GRMZM2G073047 Zea mays GRMZM2G073047 I 0.711
Gorai.004G281600 Gossypium raimondii Gorai.004G281600 I 0.711
Cucsa.235510 Cucumis sativus Cucsa.235510 I 0.710
Ca_05941 Cicer arietinum Ca_05941 I 0.709
orange1.1g041119m.g Citrus sinensis orange1.1g041119m.g I 0.709
Ciclev10009138m.g Citrus clementina Ciclev10009138m.g I 0.709
MTR_8g102800 Medicago truncatula MTR_8g102800 I 0.709
GLYMA08G03910 Glycine max GLYMA08G03910 I 0.709
Bo9g011210 Brassica oleracea Bo9g011210 I 0.708
TCM_028851 Theobroma cacao TCM_028851 I 0.708
chr4.CM0617.510.nd Lotus japonicus chr4.CM0617.510.nd I 0.708
Thhalv10004870m.g Eutrema salsugineum Thhalv10004870m.g I 0.708
Pavir.Da00839 Panicum virgatum Pavir.Da00839 I 0.708
Bra036552 Brassica rapa Bra036552 I 0.708
GLYMA05G35741 Glycine max GLYMA05G35741 I 0.706
MLOC_17203 Hordeum vulgare MLOC_17203 I 0.706
Gorai.001G008100 Gossypium raimondii Gorai.001G008100 I 0.706
gene11882-v1.0-hybrid Fragaria vesca gene11882-v1.0-hybrid I 0.706
BRADI3G08790 Brachypodium distachyon BRADI3G08790 I 0.706
ONIVA02G10590 Oryza nivara ONIVA02G10590 I 0.706
Gorai.010G075300 Gossypium raimondii Gorai.010G075300 I 0.706
OMERI02G10950 Oryza meridionalis OMERI02G10950 I 0.706
Pavir.Ab00844 Panicum virgatum Pavir.Ab00844 I 0.706
OGLUM02G09810 Oryza glumaepatula OGLUM02G09810 I 0.706
GRMZM2G047918 Zea mays GRMZM2G047918 I 0.706
LPERR06G15020 Leersia perrieri LPERR06G15020 I 0.706
Si018188m.g Setaria italica Si018188m.g I 0.706
ORGLA02G0087100 Oryza glaberrima ORGLA02G0087100 I 0.706
ORUFI02G09750 Oryza rufipogon ORUFI02G09750 I 0.706
OPUNC02G08670 Oryza punctata OPUNC02G08670 I 0.706
OB06G25840 Oryza brachyantha OB06G25840 I 0.704
Bo8g095240 Brassica oleracea Bo8g095240 I 0.704
Bra007539 Brassica rapa Bra007539 I 0.704
Thhalv10006200m.g Eutrema salsugineum Thhalv10006200m.g I 0.704
Gorai.009G050200 Gossypium raimondii Gorai.009G050200 I 0.703
Eucgr.C03785 Eucalyptus grandis Eucgr.C03785 I 0.703
PGSC0003DMG400007025 Solanum tuberosum PGSC0003DMG400007025 I 0.703
mgf019024m Mimulus guttatus mgf019024m I 0.703
GRMZM2G005301 Zea mays GRMZM2G005301 I 0.703
Solyc05g050830.1 Solanum lycopersicum Solyc05g050830.1 I 0.703
Bra037041 Brassica rapa Bra037041 I 0.702
BRADI2G06180 Brachypodium distachyon BRADI2G06180 I 0.702
Bra034535 Brassica rapa Bra034535 I 0.701
Bo3g171090 Brassica oleracea Bo3g171090 I 0.701
Sb03g002630 Sorghum bicolor Sb03g002630 I 0.701
Bo7g115860 Brassica oleracea Bo7g115860 I 0.701
Pavir.Eb00249 Panicum virgatum Pavir.Eb00249 I 0.701
Si002749m.g Setaria italica Si002749m.g I 0.701
Eucgr.F03062 Eucalyptus grandis Eucgr.F03062 I 0.701
Thhalv10026204m.g Eutrema salsugineum Thhalv10026204m.g I 0.701
Solyc01g090560.2 Solanum lycopersicum Solyc01g090560.2 I 0.700
mgf022971m Mimulus guttatus mgf022971m I 0.700
PGSC0003DMG400026035 Solanum tuberosum PGSC0003DMG400026035 I 0.700
Pavir.Aa00833 Panicum virgatum Pavir.Aa00833 I 0.699
Lus10002801.g Linum usitatissimum Lus10002801.g I 0.699
GRMZM5G816314 Zea mays GRMZM5G816314 I 0.699
Pavir.Ab02603 Panicum virgatum Pavir.Ab02603 I 0.699
Lus10001601.g Linum usitatissimum Lus10001601.g I 0.699
GRMZM2G048621 Zea mays GRMZM2G048621 I 0.699
Si017865m.g Setaria italica Si017865m.g I 0.699
Si019772m.g Setaria italica Si019772m.g I 0.699
Sb04g032940 Sorghum bicolor Sb04g032940 I 0.699
GRMZM2G072926 Zea mays GRMZM2G072926 I 0.699
GRMZM2G041839 Zea mays GRMZM2G041839 I 0.699
OGLUM01G07430 Oryza glumaepatula OGLUM01G07430 I 0.698
OS01G0200600 Oryza sativa OS01G0200600 I 0.698
OPUNC01G06210 Oryza punctata OPUNC01G06210 I 0.698
OMERI01G06530 Oryza meridionalis OMERI01G06530 I 0.698
OBART01G06440 Oryza barthii OBART01G06440 I 0.698
ORUFI01G06970 Oryza rufipogon ORUFI01G06970 I 0.698
ORGLA01G0061000 Oryza glaberrima ORGLA01G0061000 I 0.698
Solyc06g066540.1 Solanum lycopersicum Solyc06g066540.1 I 0.697
30146.m003535 Ricinus communis 30146.m003535 I 0.696
Cagra.4093s0009 Capsella grandiflora Cagra.4093s0009 I 0.694
scaffold_700899.1 Arabidopsis lyrata scaffold_700899.1 I 0.694
Carubv10006567m.g Capsella rubella Carubv10006567m.g I 0.694
ERF043 Arabidopsis thaliana AT4G32800 D 0.694
Bostr.7867s1130 Boechera stricta Bostr.7867s1130 I 0.694
GSMUA_Achr2G09430_001 Musa acuminata GSMUA_Achr2G09430_001 I 0.693
Ciclev10006536m.g Citrus clementina Ciclev10006536m.g I 0.692
orange1.1g041015m.g Citrus sinensis orange1.1g041015m.g I 0.692
ONIVA01G08000 Oryza nivara ONIVA01G08000 I 0.691
BGIOSGA002184 Oryza indica BGIOSGA002184 I 0.691
30174.m008790 Ricinus communis 30174.m008790 I 0.691
SapurV1A.0033s0230 Salix purpurea SapurV1A.0033s0230 I 0.690
Lus10038607.g Linum usitatissimum Lus10038607.g I 0.690
Gorai.009G136500 Gossypium raimondii Gorai.009G136500 I 0.689
Carubv10023699m.g Capsella rubella Carubv10023699m.g I 0.689
Bostr.25993s0277 Boechera stricta Bostr.25993s0277 I 0.689
Cagra.0239s0048 Capsella grandiflora Cagra.0239s0048 I 0.689
POPTR_0002s14210 Populus trichocarpa POPTR_0002s14210 I 0.689
fgenesh2_kg.4__2683__AT2G44940.1 Arabidopsis lyrata fgenesh2_kg.4__2683__AT2G44940.1 I 0.689
AC187157.4_FG001 Zea mays AC187157.4_FG001 I 0.689
ERF034 Arabidopsis thaliana AT2G44940 D 0.689
Cla017050 Citrullus lanatus Cla017050 I 0.688
PRUPE_ppa009812mg Prunus persica PRUPE_ppa009812mg I 0.688
Aquca_011_00566 Aquilegia coerulea Aquca_011_00566 I 0.688
Thhalv10001792m.g Eutrema salsugineum Thhalv10001792m.g I 0.688
Pm017610 Prunus mume Pm017610 I 0.688
Cucsa.116550 Cucumis sativus Cucsa.116550 I 0.688
cassava19912.m1 Manihot esculenta cassava19912.m1 I 0.688
cassava19875.m1 Manihot esculenta cassava19875.m1 I 0.688
TCM_005639 Theobroma cacao TCM_005639 I 0.688
Gorai.004G165300 Gossypium raimondii Gorai.004G165300 I 0.687
gene08876-v1.0-hybrid Fragaria vesca gene08876-v1.0-hybrid I 0.686
Solyc03g120840.1 Solanum lycopersicum Solyc03g120840.1 I 0.685
Bra027177 Brassica rapa Bra027177 I 0.684
Bo5g126280 Brassica oleracea Bo5g126280 I 0.684
PRUPE_ppa010130mg Prunus persica PRUPE_ppa010130mg I 0.684
Pm027339 Prunus mume Pm027339 I 0.684
ORUFI10G19670 Oryza rufipogon ORUFI10G19670 I 0.684
PGSC0003DMG400002620 Solanum tuberosum PGSC0003DMG400002620 I 0.683
TCM_014892 Theobroma cacao TCM_014892 I 0.683
GSMUA_Achr1G04350_001 Musa acuminata GSMUA_Achr1G04350_001 I 0.683
Bra004878 Brassica rapa Bra004878 I 0.683
PGSC0003DMG400004826 Solanum tuberosum PGSC0003DMG400004826 I 0.683
Bo4g195280 Brassica oleracea Bo4g195280 I 0.683
TRAES3BF073700060CFD_g Triticum aestivum TRAES3BF073700060CFD_g I 0.683
Bra040333 Brassica rapa Bra040333 I 0.683
Bo4g024220 Brassica oleracea Bo4g024220 I 0.683
ERF035 Arabidopsis thaliana AT3G60490 D 0.682
Thhalv10022278m.g Eutrema salsugineum Thhalv10022278m.g I 0.682
scaffold_301905.1 Arabidopsis lyrata scaffold_301905.1 I 0.682
fgenesh2_kg.5__2513__AT3G60490.1 Arabidopsis lyrata fgenesh2_kg.5__2513__AT3G60490.1 I 0.682
Carubv10014506m.g Capsella rubella Carubv10014506m.g I 0.682
Cagra.6624s0013 Capsella grandiflora Cagra.6624s0013 I 0.682
evm.TU.supercontig_101.39 Carica papaya evm.TU.supercontig_101.39 I 0.681
gene08873-v1.0-hybrid Fragaria vesca gene08873-v1.0-hybrid I 0.680
Ca_14911 Cicer arietinum Ca_14911 I 0.680
Cagra.3527s0003 Capsella grandiflora Cagra.3527s0003 I 0.680
Carubv10017799m.g Capsella rubella Carubv10017799m.g I 0.680
Ciclev10027587m.g Citrus clementina Ciclev10027587m.g I 0.679
Gorai.003G063500 Gossypium raimondii Gorai.003G063500 I 0.679
orange1.1g038538m.g Citrus sinensis orange1.1g038538m.g I 0.679
Sb04g032960 Sorghum bicolor Sb04g032960 I 0.678
Carubv10024051m.g Capsella rubella Carubv10024051m.g I 0.678
GRMZM5G842961 Zea mays GRMZM5G842961 I 0.678
AT3G16280 Arabidopsis thaliana AT3G16280 D 0.678
Si017995m.g Setaria italica Si017995m.g I 0.678
MTR_1g006660 Medicago truncatula MTR_1g006660 I 0.678
Cagra.21659s0001 Capsella grandiflora Cagra.21659s0001 I 0.678
Bostr.13158s0050 Boechera stricta Bostr.13158s0050 I 0.678
ERF042 Arabidopsis thaliana AT2G25820 I 0.677
Bo3g037480 Brassica oleracea Bo3g037480 I 0.677
Bra034273 Brassica rapa Bra034273 I 0.677
Pm013463 Prunus mume Pm013463 I 0.677
VIT_09s0002g03940 Vitis vinifera VIT_09s0002g03940 I 0.677
Bra000366 Brassica rapa Bra000366 I 0.677