CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_71661
(
Selaginella moellendorffii
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
SELMODRAFT_71661
T005191_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF043
M01627_2.00
Arabidopsis thaliana
YRCCGACA
TGTCGGYR
PBM
Weirauch et al.(2014)
pTH7413
0.698
0.780
ERF043
M06651_2.00
Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a
0.698
0.780
ERF043
M06652_2.00
Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN
Dap-seq
OMalley et al.(2016)
At4g32800_col
0.698
0.780
ERF034
M06614_2.00
Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN
Dap-seq
OMalley et al.(2016)
At2g44940_col_a
0.692
0.780
ERF034
M06615_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a
0.692
0.780
ERF035
M06631_2.00
Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
AT3G60490_col_a
0.684
0.760
ERF035
M06632_2.00
Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN
Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a
0.684
0.760
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ07906
AP2
3
54
PVYIGVRRRSWGKWVSEIREPKKKNRIWLGSFPTPEMAARAHDVAALCLRGE
Links
Other
AP2
family TFs
Other
Selaginella moellendorffii
TFs
135 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SELMODRAFT_71659
Selaginella moellendorffii
SELMODRAFT_71659
I
0.826
SELMODRAFT_104978
Selaginella moellendorffii
SELMODRAFT_104978
I
0.766
SELMODRAFT_125385
Selaginella moellendorffii
SELMODRAFT_125385
I
0.766
OPUNC02G24210
Oryza punctata
OPUNC02G24210
I
0.732
OPUNC04G18500
Oryza punctata
OPUNC04G18500
I
0.732
ORGLA02G0228000
Oryza glaberrima
ORGLA02G0228000
I
0.732
ONIVA04G19040
Oryza nivara
ONIVA04G19040
I
0.732
OMERI02G25900
Oryza meridionalis
OMERI02G25900
I
0.732
ONIVA02G28960
Oryza nivara
ONIVA02G28960
I
0.732
ORGLA04G0178600
Oryza glaberrima
ORGLA04G0178600
I
0.732
OGLUM04G20750
Oryza glumaepatula
OGLUM04G20750
I
0.732
OMERI04G17260
Oryza meridionalis
OMERI04G17260
I
0.732
OS02G0656600
Oryza sativa
OS02G0656600
I
0.732
Traes_2BL_593E1CCC2
Triticum aestivum
Traes_2BL_593E1CCC2
I
0.732
Pavir.Ga01095
Panicum virgatum
Pavir.Ga01095
I
0.732
Pavir.J17742
Panicum virgatum
Pavir.J17742
I
0.732
Traes_2AL_45E6314EF
Triticum aestivum
Traes_2AL_45E6314EF
I
0.732
Sb06g024530
Sorghum bicolor
Sb06g024530
I
0.732
OGLUM02G27010
Oryza glumaepatula
OGLUM02G27010
I
0.732
OS04G0549700
Oryza sativa
OS04G0549700
I
0.732
ORUFI04G22400
Oryza rufipogon
ORUFI04G22400
I
0.732
Si010703m.g
Setaria italica
Si010703m.g
I
0.732
BGIOSGA016882
Oryza indica
BGIOSGA016882
I
0.732
BRADI3G50620
Brachypodium distachyon
BRADI3G50620
I
0.731
Cla015715
Citrullus lanatus
Cla015715
I
0.727
GSMUA_Achr10G27680_001
Musa acuminata
GSMUA_Achr10G27680_001
I
0.726
MLOC_75601
Hordeum vulgare
MLOC_75601
I
0.722
Traes_6DL_901793D6D
Triticum aestivum
Traes_6DL_901793D6D
I
0.722
POPTR_0003s04920
Populus trichocarpa
POPTR_0003s04920
I
0.721
evm.TU.supercontig_109.32
Carica papaya
evm.TU.supercontig_109.32
I
0.717
Bo6g077080
Brassica oleracea
Bo6g077080
I
0.715
Bra003415
Brassica rapa
Bra003415
I
0.715
Thhalv10004870m.g
Eutrema salsugineum
Thhalv10004870m.g
I
0.711
Bra036552
Brassica rapa
Bra036552
I
0.711
Bo9g011210
Brassica oleracea
Bo9g011210
I
0.711
SELMODRAFT_26594
Selaginella moellendorffii
SELMODRAFT_26594
I
0.708
SELMODRAFT_26604
Selaginella moellendorffii
SELMODRAFT_26604
I
0.708
TCM_028851
Theobroma cacao
TCM_028851
I
0.707
Eucgr.F03062
Eucalyptus grandis
Eucgr.F03062
I
0.706
Thhalv10006200m.g
Eutrema salsugineum
Thhalv10006200m.g
I
0.706
Bo8g095240
Brassica oleracea
Bo8g095240
I
0.706
Bra007539
Brassica rapa
Bra007539
I
0.706
PGSC0003DMG400007025
Solanum tuberosum
PGSC0003DMG400007025
I
0.705
Lus10038270.g
Linum usitatissimum
Lus10038270.g
I
0.705
Gorai.009G050200
Gossypium raimondii
Gorai.009G050200
I
0.705
Solyc05g050830.1
Solanum lycopersicum
Solyc05g050830.1
I
0.705
Bra037041
Brassica rapa
Bra037041
I
0.705
Lus10038607.g
Linum usitatissimum
Lus10038607.g
I
0.705
Thhalv10026204m.g
Eutrema salsugineum
Thhalv10026204m.g
I
0.704
Bra034535
Brassica rapa
Bra034535
I
0.704
mgf022971m
Mimulus guttatus
mgf022971m
I
0.704
Bo3g171090
Brassica oleracea
Bo3g171090
I
0.704
Bo7g115860
Brassica oleracea
Bo7g115860
I
0.704
Cla012859
Citrullus lanatus
Cla012859
I
0.703
Cucsa.038760
Cucumis sativus
Cucsa.038760
I
0.703
SapurV1A.2848s0020
Salix purpurea
SapurV1A.2848s0020
I
0.702
Lus10025834.g
Linum usitatissimum
Lus10025834.g
I
0.702
SapurV1A.0370s0130
Salix purpurea
SapurV1A.0370s0130
I
0.702
Solyc06g066540.1
Solanum lycopersicum
Solyc06g066540.1
I
0.700
30146.m003535
Ricinus communis
30146.m003535
I
0.699
ERF043
Arabidopsis thaliana
AT4G32800
D
0.698
Bostr.7867s1130
Boechera stricta
Bostr.7867s1130
I
0.698
scaffold_700899.1
Arabidopsis lyrata
scaffold_700899.1
I
0.698
Lus10001601.g
Linum usitatissimum
Lus10001601.g
I
0.698
Carubv10006567m.g
Capsella rubella
Carubv10006567m.g
I
0.698
Lus10002801.g
Linum usitatissimum
Lus10002801.g
I
0.698
Cagra.4093s0009
Capsella grandiflora
Cagra.4093s0009
I
0.698
Cucsa.359390
Cucumis sativus
Cucsa.359390
I
0.698
PGSC0003DMG400004826
Solanum tuberosum
PGSC0003DMG400004826
I
0.695
30174.m008790
Ricinus communis
30174.m008790
I
0.694
SapurV1A.0033s0230
Salix purpurea
SapurV1A.0033s0230
I
0.694
TCM_005639
Theobroma cacao
TCM_005639
I
0.694
Bo4g158810
Brassica oleracea
Bo4g158810
I
0.694
Aquca_011_00566
Aquilegia coerulea
Aquca_011_00566
I
0.693
Solyc08g078420.1
Solanum lycopersicum
Solyc08g078420.1
I
0.693
PGSC0003DMG400004825
Solanum tuberosum
PGSC0003DMG400004825
I
0.693
Solyc08g078410.1
Solanum lycopersicum
Solyc08g078410.1
I
0.693
POPTR_0001s18800
Populus trichocarpa
POPTR_0001s18800
I
0.693
Al_scaffold_0006_1828
Arabidopsis lyrata
Al_scaffold_0006_1828
I
0.692
PRUPE_ppa009812mg
Prunus persica
PRUPE_ppa009812mg
I
0.692
fgenesh2_kg.4__2683__AT2G44940.1
Arabidopsis lyrata
fgenesh2_kg.4__2683__AT2G44940.1
I
0.692
Pm017610
Prunus mume
Pm017610
I
0.692
Bostr.25993s0277
Boechera stricta
Bostr.25993s0277
I
0.692
Thhalv10001792m.g
Eutrema salsugineum
Thhalv10001792m.g
I
0.692
Carubv10023699m.g
Capsella rubella
Carubv10023699m.g
I
0.692
ERF034
Arabidopsis thaliana
AT2G44940
D
0.692
Cagra.0239s0048
Capsella grandiflora
Cagra.0239s0048
I
0.692
Al_scaffold_0004_2818
Arabidopsis lyrata
Al_scaffold_0004_2818
I
0.692
cassava19875.m1
Manihot esculenta
cassava19875.m1
I
0.691
cassava19912.m1
Manihot esculenta
cassava19912.m1
I
0.691
POPTR_0002s14210
Populus trichocarpa
POPTR_0002s14210
I
0.691
Gorai.004G165300
Gossypium raimondii
Gorai.004G165300
I
0.690
Ciclev10006536m.g
Citrus clementina
Ciclev10006536m.g
I
0.690
orange1.1g041015m.g
Citrus sinensis
orange1.1g041015m.g
I
0.690
evm.TU.supercontig_40.39
Carica papaya
evm.TU.supercontig_40.39
I
0.689
VIT_00s0341g00080
Vitis vinifera
VIT_00s0341g00080
I
0.689
ORUFI10G19670
Oryza rufipogon
ORUFI10G19670
I
0.689
PGSC0003DMG400002620
Solanum tuberosum
PGSC0003DMG400002620
I
0.689
Solyc03g120840.1
Solanum lycopersicum
Solyc03g120840.1
I
0.688
GSMUA_Achr1G04350_001
Musa acuminata
GSMUA_Achr1G04350_001
I
0.688
Gorai.009G136500
Gossypium raimondii
Gorai.009G136500
I
0.688
Bra004878
Brassica rapa
Bra004878
I
0.686
Bo4g195280
Brassica oleracea
Bo4g195280
I
0.686
Bra040333
Brassica rapa
Bra040333
I
0.686
Bo4g024220
Brassica oleracea
Bo4g024220
I
0.686
TCM_014892
Theobroma cacao
TCM_014892
I
0.685
Solyc12g044390.1
Solanum lycopersicum
Solyc12g044390.1
I
0.685
PGSC0003DMG400026461
Solanum tuberosum
PGSC0003DMG400026461
I
0.685
evm.TU.supercontig_101.39
Carica papaya
evm.TU.supercontig_101.39
I
0.684
ERF035
Arabidopsis thaliana
AT3G60490
D
0.684
MTR_1g006660
Medicago truncatula
MTR_1g006660
I
0.684
fgenesh2_kg.5__2513__AT3G60490.1
Arabidopsis lyrata
fgenesh2_kg.5__2513__AT3G60490.1
I
0.684
Cagra.3527s0003
Capsella grandiflora
Cagra.3527s0003
I
0.683
Ca_14911
Cicer arietinum
Ca_14911
I
0.683
Carubv10017799m.g
Capsella rubella
Carubv10017799m.g
I
0.683
Bra034273
Brassica rapa
Bra034273
I
0.681
Carubv10024051m.g
Capsella rubella
Carubv10024051m.g
I
0.681
ERF042
Arabidopsis thaliana
AT2G25820
I
0.681
Cagra.21659s0001
Capsella grandiflora
Cagra.21659s0001
I
0.681
Bra000366
Brassica rapa
Bra000366
I
0.680
Bostr.13158s0050
Boechera stricta
Bostr.13158s0050
I
0.680
Bo3g037480
Brassica oleracea
Bo3g037480
I
0.680
Bo1g009990
Brassica oleracea
Bo1g009990
I
0.679
Pm013463
Prunus mume
Pm013463
I
0.679
Bra011383
Brassica rapa
Bra011383
I
0.679
PRUPE_ppa010130mg
Prunus persica
PRUPE_ppa010130mg
I
0.678
Ciclev10027587m.g
Citrus clementina
Ciclev10027587m.g
I
0.678
mgf024816m
Mimulus guttatus
mgf024816m
I
0.678
orange1.1g038538m.g
Citrus sinensis
orange1.1g038538m.g
I
0.678
Pm027339
Prunus mume
Pm027339
I
0.678
Gorai.003G063500
Gossypium raimondii
Gorai.003G063500
I
0.678
PK01156.1
Cannabis sativa
PK01156.1
I
0.677
TCM_044478
Theobroma cacao
TCM_044478
I
0.677
MTR_5g012910
Medicago truncatula
MTR_5g012910
I
0.677
MTR_2g101340
Medicago truncatula
MTR_2g101340
I
0.677