Pavir.Ba01280 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba01280 T009359_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M09710_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_01 		0.916 0.943
DREB1A
M09711_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SED_Q2 		0.916 0.943
Q8GZQ2_MAIZE
M09720_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_02 		0.706 0.811
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01280.1.p AP2 52 105

Links

Other AP2 family TFs
Other Panicum virgatum TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.917
Si030998m.g Setaria italica Si030998m.g I 0.917
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.916
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.916
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.916
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.916
DREB1A Oryza sativa OS09G0522200 D 0.916
OBART09G16810 Oryza barthii OBART09G16810 I 0.916
DREB1A Oryza indica BGIOSGA029415 I 0.916
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.916
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.850
Si031001m.g Setaria italica Si031001m.g I 0.850
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.850
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.844
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.842
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.840
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.837
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.834
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.826
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.824
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.805
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.802
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.794
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.794
F775_27111 Aegilops tauschii F775_27111 I 0.777
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.777
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.772
OBART09G16830 Oryza barthii OBART09G16830 I 0.730
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.724
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.718
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.710
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.706
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.705
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.692