Pavir.Ba01281 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba01281 T009360_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M09710_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_01 		0.785 0.887
DREB1A
M09711_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SED_Q2 		0.785 0.887
Q8GZQ2_MAIZE
M09720_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_02 		0.773 0.849
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01281.1.p AP2 55 108

Links

Other AP2 family TFs
Other Panicum virgatum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.847
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.847
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.845
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.843
Pavir.J03893 Panicum virgatum Pavir.J03893 I 0.839
Si031001m.g Setaria italica Si031001m.g I 0.830
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.830
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.830
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.824
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.824
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.822
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.820
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.817
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.804
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.794
Si030998m.g Setaria italica Si030998m.g I 0.786
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.786
DREB1A Oryza sativa OS09G0522200 D 0.785
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.785
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.785
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.785
DREB1A Oryza indica BGIOSGA029415 I 0.785
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.785
OBART09G16810 Oryza barthii OBART09G16810 I 0.785
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.785
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.777
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.773
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.766
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.765
F775_27111 Aegilops tauschii F775_27111 I 0.757
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.757
OBART09G16830 Oryza barthii OBART09G16830 I 0.756
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.743
Pavir.J32829 Panicum virgatum Pavir.J32829 N 0.710
GRMZM2G175856 Zea mays GRMZM2G175856 N 0.710
Sb07g025210 Sorghum bicolor Sb07g025210 N 0.710
Pavir.Fa00114 Panicum virgatum Pavir.Fa00114 N 0.704
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.703