Pavir.J03893 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J03893 T009556_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M09710_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_01 		0.827 0.887
DREB1A
M09711_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SED_Q2 		0.827 0.887
Q8GZQ2_MAIZE
M09720_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1A_02 		0.760 0.830
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J03893.1.p AP2 56 109

Links

Other AP2 family TFs
Other Panicum virgatum TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J03892 Panicum virgatum Pavir.J03892 I 0.893
Sb02g030330 Sorghum bicolor Sb02g030330 I 0.884
Sb02g030340 Sorghum bicolor Sb02g030340 I 0.879
Sb02g030320 Sorghum bicolor Sb02g030320 I 0.875
Si031001m.g Setaria italica Si031001m.g I 0.875
Pavir.J27101 Panicum virgatum Pavir.J27101 I 0.875
LPERR09G12950 Leersia perrieri LPERR09G12950 I 0.873
Sb05g006275 Sorghum bicolor Sb05g006275 I 0.867
GRMZM2G069126 Zea mays GRMZM2G069126 I 0.852
BRADI4G35650 Brachypodium distachyon BRADI4G35650 I 0.849
ORGLA08G0220100 Oryza glaberrima ORGLA08G0220100 I 0.841
Pavir.Ba01281 Panicum virgatum Pavir.Ba01281 I 0.839
GRMZM2G069146 Zea mays GRMZM2G069146 I 0.831
Pavir.J03891 Panicum virgatum Pavir.J03891 I 0.831
Si030998m.g Setaria italica Si030998m.g I 0.831
DREB1A Oryza indica BGIOSGA029415 I 0.827
DREB1A Oryza sativa OS09G0522200 D 0.827
ORUFI09G18210 Oryza rufipogon ORUFI09G18210 I 0.827
OGLUM09G17430 Oryza glumaepatula OGLUM09G17430 I 0.827
OBART09G16810 Oryza barthii OBART09G16810 I 0.827
OPUNC09G15290 Oryza punctata OPUNC09G15290 I 0.827
OMERI09G12490 Oryza meridionalis OMERI09G12490 I 0.827
ONIVA09G17900 Oryza nivara ONIVA09G17900 I 0.827
Pavir.Ba01280 Panicum virgatum Pavir.Ba01280 I 0.826
GRMZM2G124011 Zea mays GRMZM2G124011 I 0.822
Traes_5BL_D16B19610 Triticum aestivum Traes_5BL_D16B19610 I 0.797
F775_27111 Aegilops tauschii F775_27111 I 0.797
GRMZM2G124037 Zea mays GRMZM2G124037 I 0.765
Q8GZQ2_MAIZE Zea mays Q8GZQ2_MAIZE D 0.760
OBART09G16830 Oryza barthii OBART09G16830 I 0.752
GRMZM2G069082 Zea mays GRMZM2G069082 I 0.751
Pavir.Fb02246 Panicum virgatum Pavir.Fb02246 I 0.745
OPUNC09G15260 Oryza punctata OPUNC09G15260 I 0.723
Pavir.Fa00114 Panicum virgatum Pavir.Fa00114 N 0.702
Traes_5BL_5299B6B33 Triticum aestivum Traes_5BL_5299B6B33 N 0.697
BRADI4G35610 Brachypodium distachyon BRADI4G35610 I 0.696
Pavir.J32829 Panicum virgatum Pavir.J32829 N 0.694
GRMZM2G175856 Zea mays GRMZM2G175856 N 0.694
Sb07g025210 Sorghum bicolor Sb07g025210 N 0.688