XM_002320618.1 (Populus trichocarpa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 POPTR_0020s00210 T020937_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.765 0.765
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0020s00210.1 B3 158 260

Links

Other B3 family TFs
Other Populus trichocarpa TFs

262 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0014s12980 Populus trichocarpa POPTR_0014s12980 I 0.867
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.814
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.803
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.803
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.803
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.803
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.789
PK04762.1 Cannabis sativa PK04762.1 I 0.786
POPTR_0012s10790 Populus trichocarpa POPTR_0012s10790 I 0.786
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.786
AMTR_s00057p00141830 Amborella trichopoda AMTR_s00057p00141830 I 0.786
mgf015308m Mimulus guttatus mgf015308m I 0.776
PK16974.1 Cannabis sativa PK16974.1 I 0.776
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.776
orange1.1g004792m.g Citrus sinensis orange1.1g004792m.g I 0.776
GRMZM2G116557 Zea mays GRMZM2G116557 I 0.776
GSMUA_Achr10G12070_001 Musa acuminata GSMUA_Achr10G12070_001 I 0.776
MDP0000258032 Malus domestica MDP0000258032 I 0.776
GSMUA_Achr6G08090_001 Musa acuminata GSMUA_Achr6G08090_001 I 0.776
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.776
MDP0000310875 Malus domestica MDP0000310875 I 0.776
cassava37256.valid.m1 Manihot esculenta cassava37256.valid.m1 I 0.776
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.776
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.776
MTR_8g100050 Medicago truncatula MTR_8g100050 I 0.776
LjSGA_068216.1 Lotus japonicus LjSGA_068216.1 I 0.776
Bra010048 Brassica rapa Bra010048 I 0.776
Bo3g108130 Brassica oleracea Bo3g108130 I 0.776
Gorai.008G210200 Gossypium raimondii Gorai.008G210200 I 0.776
mgf006511m Mimulus guttatus mgf006511m I 0.776
Cla019614 Citrullus lanatus Cla019614 I 0.776
cassava17839.valid.m1 Manihot esculenta cassava17839.valid.m1 I 0.776
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.776
F775_31280 Aegilops tauschii F775_31280 I 0.776
cassava17840.valid.m1 Manihot esculenta cassava17840.valid.m1 I 0.776
OBART11G15270 Oryza barthii OBART11G15270 I 0.765
OGLUM11G14710 Oryza glumaepatula OGLUM11G14710 I 0.765
ORUFI11G16290 Oryza rufipogon ORUFI11G16290 I 0.765
ONIVA12G10760 Oryza nivara ONIVA12G10760 I 0.765
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.765
PGSC0003DMG400014179 Solanum tuberosum PGSC0003DMG400014179 I 0.765
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.765
Carubv10025860m.g Capsella rubella Carubv10025860m.g I 0.765
OLONG_022378 Oryza longistaminata OLONG_022378 I 0.765
ORGLA11G0129300 Oryza glaberrima ORGLA11G0129300 I 0.765
OPUNC11G12650 Oryza punctata OPUNC11G12650 I 0.765
OS11G0523800 Oryza sativa OS11G0523800 I 0.765
ARF2 Arabidopsis lyrata scaffold_802850.1 I 0.765
TRAES3BF001100080CFD_g Triticum aestivum TRAES3BF001100080CFD_g I 0.765
TCM_014743 Theobroma cacao TCM_014743 I 0.765
VIT_01s0244g00150 Vitis vinifera VIT_01s0244g00150 I 0.765
VIT_07s0104g01230 Vitis vinifera VIT_07s0104g01230 I 0.765
Pm024588 Prunus mume Pm024588 I 0.765
Ca_05681 Cicer arietinum Ca_05681 I 0.765
TCM_008374 Theobroma cacao TCM_008374 I 0.765
Solyc12g042070.1 Solanum lycopersicum Solyc12g042070.1 I 0.765
Lus10043200.g Linum usitatissimum Lus10043200.g I 0.765
PRUPE_ppa001392mg Prunus persica PRUPE_ppa001392mg I 0.765
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.765
Lus10032541.g Linum usitatissimum Lus10032541.g I 0.765
Si000340m.g Setaria italica Si000340m.g I 0.765
OB11G21910 Oryza brachyantha OB11G21910 I 0.765
PGSC0003DMG400014452 Solanum tuberosum PGSC0003DMG400014452 I 0.765
OMERI11G12590 Oryza meridionalis OMERI11G12590 I 0.765
ARF2 Arabidopsis thaliana AT5G62000 D 0.765
ARF23 Oryza indica BGIOSGA033901 I 0.765
BRADI4G17410 Brachypodium distachyon BRADI4G17410 I 0.765
Thhalv10003641m.g Eutrema salsugineum Thhalv10003641m.g I 0.765
MLOC_68907 Hordeum vulgare MLOC_68907 I 0.765
SapurV1A.0672s0210 Salix purpurea SapurV1A.0672s0210 I 0.765
LPERR11G11950 Leersia perrieri LPERR11G11950 I 0.765
LPERR12G09930 Leersia perrieri LPERR12G09930 I 0.765
SapurV1A.0517s0240 Salix purpurea SapurV1A.0517s0240 I 0.765
BRADI2G59480 Brachypodium distachyon BRADI2G59480 I 0.765
F775_32662 Aegilops tauschii F775_32662 I 0.765
Bo2g161810 Brassica oleracea Bo2g161810 I 0.765
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.765
Bo9g014770 Brassica oleracea Bo9g014770 I 0.765
GLYMA05G38540 Glycine max GLYMA05G38540 I 0.765
Bra035910 Brassica rapa Bra035910 I 0.765
Bostr.26833s0038 Boechera stricta Bostr.26833s0038 I 0.765
Cagra.4553s0009 Capsella grandiflora Cagra.4553s0009 I 0.765
mgf020855m Mimulus guttatus mgf020855m I 0.765
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.765
Ciclev10019257m.g Citrus clementina Ciclev10019257m.g I 0.763
orange1.1g005060m.g Citrus sinensis orange1.1g005060m.g I 0.763
evm.TU.contig_31756 Carica papaya evm.TU.contig_31756 I 0.755
Gorai.007G131900 Gossypium raimondii Gorai.007G131900 I 0.755
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.755
Si021216m.g Setaria italica Si021216m.g I 0.755
OGLUM01G46840 Oryza glumaepatula OGLUM01G46840 I 0.755
OB12G20020 Oryza brachyantha OB12G20020 I 0.755
GRMZM2G352159 Zea mays GRMZM2G352159 I 0.755
Sb08g014320 Sorghum bicolor Sb08g014320 I 0.755
GLYMA06G17320 Glycine max GLYMA06G17320 I 0.755
GLYMA04G37760 Glycine max GLYMA04G37760 I 0.755
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.755
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.755
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.755
SapurV1A.0774s0040 Salix purpurea SapurV1A.0774s0040 I 0.755
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.755
OPUNC01G41560 Oryza punctata OPUNC01G41560 I 0.755
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.755
PRUPE_ppa022314mg Prunus persica PRUPE_ppa022314mg I 0.745
Pm019941 Prunus mume Pm019941 I 0.745
TCM_004526 Theobroma cacao TCM_004526 I 0.745
ORGLA01G0363100 Oryza glaberrima ORGLA01G0363100 I 0.745
GSMUA_AchrUn_randomG14770_001 Musa acuminata GSMUA_AchrUn_randomG14770_001 I 0.745
ORUFI01G45980 Oryza rufipogon ORUFI01G45980 I 0.745
OMERI01G39560 Oryza meridionalis OMERI01G39560 I 0.745
PDK_20s1394651g001 Phoenix dactylifera PDK_20s1394651g001 I 0.745
BGIOSGA005099 Oryza indica BGIOSGA005099 I 0.745
BRADI4G07470 Brachypodium distachyon BRADI4G07470 I 0.745
ARF4 Oryza sativa OS01G0927600 I 0.745
ONIVA01G48620 Oryza nivara ONIVA01G48620 I 0.745
OBART01G42570 Oryza barthii OBART01G42570 I 0.745
PGSC0003DMG400020711 Solanum tuberosum PGSC0003DMG400020711 I 0.742
PDK_20s1869091g001 Phoenix dactylifera PDK_20s1869091g001 I 0.742
OMERI04G12260 Oryza meridionalis OMERI04G12260 I 0.740
ARF9 Oryza sativa OS04G0442000 I 0.740
ORUFI04G14900 Oryza rufipogon ORUFI04G14900 I 0.740
BGIOSGA016467 Oryza indica BGIOSGA016467 I 0.740
ONIVA04G11850 Oryza nivara ONIVA04G11850 I 0.740
ORGLA04G0107000 Oryza glaberrima ORGLA04G0107000 I 0.740
OGLUM04G13380 Oryza glumaepatula OGLUM04G13380 I 0.740
GRMZM2G137413 Zea mays GRMZM2G137413 I 0.737
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.735
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.735
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.735
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.735
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.735
PK02218.1 Cannabis sativa PK02218.1 I 0.735
MDP0000123466 Malus domestica MDP0000123466 I 0.735
PK12669.1 Cannabis sativa PK12669.1 I 0.735
Cucsa.114840 Cucumis sativus Cucsa.114840 I 0.735
Gorai.003G078000 Gossypium raimondii Gorai.003G078000 I 0.735
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.735
GRMZM2G378580 Zea mays GRMZM2G378580 I 0.732
MDP0000929655 Malus domestica MDP0000929655 I 0.732
GSMUA_Achr9G08310_001 Musa acuminata GSMUA_Achr9G08310_001 I 0.732
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.732
MTR_2g005240 Medicago truncatula MTR_2g005240 I 0.732
AMTR_s00016p00168950 Amborella trichopoda AMTR_s00016p00168950 I 0.732
cassava42790.valid.m1 Manihot esculenta cassava42790.valid.m1 I 0.732
LjSGA_022281.1 Lotus japonicus LjSGA_022281.1 I 0.732
GLYMA16G00220 Glycine max GLYMA16G00220 I 0.732
Pavir.Ga01750 Panicum virgatum Pavir.Ga01750 I 0.729
Sb06g017490 Sorghum bicolor Sb06g017490 I 0.729
Pavir.Gb01617 Panicum virgatum Pavir.Gb01617 I 0.729
Si009558m.g Setaria italica Si009558m.g I 0.729
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.728
Si016562m.g Setaria italica Si016562m.g I 0.726
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.725
POPTR_0001s10900 Populus trichocarpa POPTR_0001s10900 I 0.724
30068.m002516 Ricinus communis 30068.m002516 I 0.724
MDP0000412781 Malus domestica MDP0000412781 I 0.724
MTR_4g021580 Medicago truncatula MTR_4g021580 I 0.724
SapurV1A.0035s0230 Salix purpurea SapurV1A.0035s0230 I 0.724
mgf005549m Mimulus guttatus mgf005549m I 0.724
LjSGA_059323.1 Lotus japonicus LjSGA_059323.1 I 0.724
Lus10032413.g Linum usitatissimum Lus10032413.g I 0.724
POPTR_0003s14200 Populus trichocarpa POPTR_0003s14200 I 0.724
Lus10023058.g Linum usitatissimum Lus10023058.g I 0.724
cassava32762.m1 Manihot esculenta cassava32762.m1 I 0.724
BRADI5G10950 Brachypodium distachyon BRADI5G10950 I 0.722
Traes_2BL_1AED96909 Triticum aestivum Traes_2BL_1AED96909 I 0.722
TCM_027113 Theobroma cacao TCM_027113 I 0.722
GSMUA_Achr6G12780_001 Musa acuminata GSMUA_Achr6G12780_001 I 0.719
GRMZM2G017187 Zea mays GRMZM2G017187 I 0.719
GLYMA19G39340 Glycine max GLYMA19G39340 N 0.717
OB02G28170 Oryza brachyantha OB02G28170 I 0.716
Pavir.Ab01961 Panicum virgatum Pavir.Ab01961 I 0.716
gene28545-v1.0-hybrid Fragaria vesca gene28545-v1.0-hybrid I 0.714
Gorai.010G157400 Gossypium raimondii Gorai.010G157400 I 0.714
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.714
gene29771-v1.0-hybrid Fragaria vesca gene29771-v1.0-hybrid I 0.714
TCM_016500 Theobroma cacao TCM_016500 I 0.714
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.714
POPTR_0009s01700 Populus trichocarpa POPTR_0009s01700 I 0.714
Pm000994 Prunus mume Pm000994 I 0.714
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.714
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.714
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.714
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.714
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.714
GLYMA01G25270 Glycine max GLYMA01G25270 I 0.714
VIT_02s0025g01740 Vitis vinifera VIT_02s0025g01740 I 0.714
Cla013021 Citrullus lanatus Cla013021 I 0.714
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.714
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.714
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.714
PRUPE_ppa001557mg Prunus persica PRUPE_ppa001557mg I 0.714
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.714
OB04G20880 Oryza brachyantha OB04G20880 I 0.711
SapurV1A.0499s0060 Salix purpurea SapurV1A.0499s0060 I 0.711
Gorai.007G044900 Gossypium raimondii Gorai.007G044900 I 0.711
GLYMA03G36710 Glycine max GLYMA03G36710 N 0.711
SapurV1A.0340s0160 Salix purpurea SapurV1A.0340s0160 I 0.711
30128.m008545 Ricinus communis 30128.m008545 I 0.711
POPTR_0003s16210 Populus trichocarpa POPTR_0003s16210 I 0.711
PDK_20s1477241g001 Phoenix dactylifera PDK_20s1477241g001 I 0.708
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.708
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.707
GSMUA_Achr10G16170_001 Musa acuminata GSMUA_Achr10G16170_001 I 0.705
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.704
MTR_2g014770 Medicago truncatula MTR_2g014770 I 0.704
OPUNC05G23400 Oryza punctata OPUNC05G23400 I 0.704
OPUNC05G23380 Oryza punctata OPUNC05G23380 I 0.704
OGLUM05G27420 Oryza glumaepatula OGLUM05G27420 I 0.704
Pavir.J08401 Panicum virgatum Pavir.J08401 I 0.704
ONIVA05G27700 Oryza nivara ONIVA05G27700 I 0.704
OBART05G25790 Oryza barthii OBART05G25790 I 0.704
GLYMA16G02650 Glycine max GLYMA16G02650 I 0.704
GLYMA07G32300 Glycine max GLYMA07G32300 I 0.704
GLYMA13G24240 Glycine max GLYMA13G24240 I 0.704
GLYMA07G06060 Glycine max GLYMA07G06060 I 0.704
Bo1g037360 Brassica oleracea Bo1g037360 I 0.704
AMTR_s00021p00200760 Amborella trichopoda AMTR_s00021p00200760 I 0.704
BGIOSGA020357 Oryza indica BGIOSGA020357 I 0.704
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.704
GRMZM2G030710 Zea mays GRMZM2G030710 I 0.704
GSMUA_Achr7G24330_001 Musa acuminata GSMUA_Achr7G24330_001 I 0.704
GSMUA_AchrUn_randomG11300_001 Musa acuminata GSMUA_AchrUn_randomG11300_001 I 0.704
SapurV1A.1529s0070 Salix purpurea SapurV1A.1529s0070 I 0.704
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.704
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.704
LPERR05G21420 Leersia perrieri LPERR05G21420 I 0.704
MDP0000225980 Malus domestica MDP0000225980 I 0.704
Ca_21948 Cicer arietinum Ca_21948 I 0.704
30111.m000734 Ricinus communis 30111.m000734 I 0.704
evm.TU.supercontig_96.40 Carica papaya evm.TU.supercontig_96.40 I 0.704
VIT_15s0046g00290 Vitis vinifera VIT_15s0046g00290 I 0.704
Gorai.006G120400 Gossypium raimondii Gorai.006G120400 I 0.704
ARF4 Vitis vinifera VIT_06s0004g03130 I 0.704
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.704
cassava29828.valid.m1 Manihot esculenta cassava29828.valid.m1 I 0.704
Eucgr.B02480 Eucalyptus grandis Eucgr.B02480 I 0.704
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.704
cassava830.valid.m1 Manihot esculenta cassava830.valid.m1 I 0.704
Aquca_013_00067 Aquilegia coerulea Aquca_013_00067 I 0.704
Cagra.0483s0062 Capsella grandiflora Cagra.0483s0062 I 0.704
Ciclev10014391m.g Citrus clementina Ciclev10014391m.g I 0.704
Carubv10018954m.g Capsella rubella Carubv10018954m.g I 0.704
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.704
TCM_041071 Theobroma cacao TCM_041071 I 0.704
MDP0000139073 Malus domestica MDP0000139073 I 0.704
POPTR_0014s09560 Populus trichocarpa POPTR_0014s09560 I 0.704
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.704
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.704
orange1.1g004106m.g Citrus sinensis orange1.1g004106m.g I 0.704
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.704
ORGLA05G0222700 Oryza glaberrima ORGLA05G0222700 I 0.704
Lus10040906.g Linum usitatissimum Lus10040906.g N 0.704
PGSC0003DMG400012261 Solanum tuberosum PGSC0003DMG400012261 I 0.704
Lus10005264.g Linum usitatissimum Lus10005264.g I 0.704
Lus10013942.g Linum usitatissimum Lus10013942.g I 0.704
TCM_005126 Theobroma cacao TCM_005126 I 0.704
Sb09g028450 Sorghum bicolor Sb09g028450 I 0.704
Si021595m.g Setaria italica Si021595m.g I 0.704
POPTR_0001s13110 Populus trichocarpa POPTR_0001s13110 I 0.701
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.701
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.700