Bra015456 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra015456 T031435_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.870 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra015456.1-P bHLH 290 338

Links

Other bHLH family TFs
Other Brassica rapa TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.914
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.914
Bo5g006980 Brassica oleracea Bo5g006980 I 0.914
Bo5g007030 Brassica oleracea Bo5g007030 I 0.914
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.914
Ca_14007 Cicer arietinum Ca_14007 I 0.911
BHLH128 Arabidopsis thaliana AT1G05805 I 0.911
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.911
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.911
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.911
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.911
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.911
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.911
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.911
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.894
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.891
OBART04G16900 Oryza barthii OBART04G16900 I 0.891
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.891
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.891
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.891
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.891
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.891
OB04G24170 Oryza brachyantha OB04G24170 I 0.891
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.891
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.891
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.891
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.891
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.891
OS04G0489600 Oryza sativa OS04G0489600 I 0.891
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.891
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.891
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.891
F775_26506 Aegilops tauschii F775_26506 I 0.891
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.891
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.891
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.883
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.883
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.883
Ca_07284 Cicer arietinum Ca_07284 I 0.882
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.870
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.870
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.870
30169.m006403 Ricinus communis 30169.m006403 I 0.870
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.870
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.870
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.870
MDP0000307685 Malus domestica MDP0000307685 I 0.870
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.870
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.870
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.870
F775_24576 Aegilops tauschii F775_24576 I 0.860
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.860
OS01G0900800 Oryza sativa OS01G0900800 I 0.860
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.860
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.860
OBART01G40680 Oryza barthii OBART01G40680 I 0.860
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.860
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.860
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.860
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.860
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.860
OB01G49420 Oryza brachyantha OB01G49420 I 0.860
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.860
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.860
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.860
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.860
ORGLA01G0346300 Oryza glaberrima ORGLA01G0346300 I 0.860
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.860
Pavir.J01306 Panicum virgatum Pavir.J01306 I 0.857
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.857
Si001123m.g Setaria italica Si001123m.g I 0.857
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.857
30149.m000231 Ricinus communis 30149.m000231 I 0.856
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.856
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.853
MDP0000273574 Malus domestica MDP0000273574 I 0.853
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.853
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.853
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.853
PK07850.1 Cannabis sativa PK07850.1 I 0.853
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.853
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.853
Bra004748 Brassica rapa Bra004748 I 0.853
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.853
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.853
Bra000291 Brassica rapa Bra000291 I 0.853
Bo4g019620 Brassica oleracea Bo4g019620 I 0.853
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.853
Bo3g036400 Brassica oleracea Bo3g036400 I 0.853
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.853
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.853
mgf005043m Mimulus guttatus mgf005043m I 0.853
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.853
Pm007619 Prunus mume Pm007619 I 0.853
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.853
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.853
TCM_020066 Theobroma cacao TCM_020066 I 0.853
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.848
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.843