Gorai.004G129600 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.004G129600 T049959_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK09702.1
M01124_2.00 		Cannabis sativa
GCACGTGV
BCACGTGC		 PBM
Lambert et al.(2019)
pTH11374 		0.852 0.667
BHLH14
M09785_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT4G00870_01 		0.847 0.750
BHLH13
M01698_2.00 		Arabidopsis thaliana
MCACGTGV
BCACGTGK		 PBM
Weirauch et al.(2014)
pTH7565 		0.840 0.812
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G129600.1 bHLH 291 338

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026551 Oryza indica BGIOSGA026551 I 0.881
OMERI08G17270 Oryza meridionalis OMERI08G17270 I 0.881
LPERR03G22350 Leersia perrieri LPERR03G22350 I 0.881
ORUFI08G24840 Oryza rufipogon ORUFI08G24840 I 0.881
OS08G0543700 Oryza sativa OS08G0543700 I 0.881
ORGLA08G0221300 Oryza glaberrima ORGLA08G0221300 I 0.881
ONIVA08G25370 Oryza nivara ONIVA08G25370 I 0.881
OGLUM08G23650 Oryza glumaepatula OGLUM08G23650 I 0.881
Lus10005999.g Linum usitatissimum Lus10005999.g I 0.871
GRMZM2G107560 Zea mays GRMZM2G107560 I 0.870
GRMZM2G013688 Zea mays GRMZM2G013688 I 0.870
GRMZM2G038479 Zea mays GRMZM2G038479 I 0.870
Sb02g030120 Sorghum bicolor Sb02g030120 I 0.870
OGLUM09G17250 Oryza glumaepatula OGLUM09G17250 I 0.870
ONIVA09G17720 Oryza nivara ONIVA09G17720 I 0.870
LPERR09G12780 Leersia perrieri LPERR09G12780 I 0.870
ORGLA09G0131400 Oryza glaberrima ORGLA09G0131400 I 0.870
ORUFI09G17940 Oryza rufipogon ORUFI09G17940 I 0.870
OS09G0519100 Oryza sativa OS09G0519100 I 0.870
Pavir.J01049 Panicum virgatum Pavir.J01049 I 0.870
Si032741m.g Setaria italica Si032741m.g I 0.870
Sb02g030110 Sorghum bicolor Sb02g030110 I 0.870
Si031900m.g Setaria italica Si031900m.g I 0.870
Sb07g025310 Sorghum bicolor Sb07g025310 I 0.870
Si015513m.g Setaria italica Si015513m.g I 0.870
Pavir.J40111 Panicum virgatum Pavir.J40111 I 0.870
BGIOSGA029426 Oryza indica BGIOSGA029426 I 0.870
Pavir.Ba01305 Panicum virgatum Pavir.Ba01305 I 0.870
Pavir.Ba01307 Panicum virgatum Pavir.Ba01307 I 0.870
GSMUA_Achr8G14720_001 Musa acuminata GSMUA_Achr8G14720_001 I 0.864
GSMUA_Achr11G17840_001 Musa acuminata GSMUA_Achr11G17840_001 I 0.864
GSMUA_Achr7G04720_001 Musa acuminata GSMUA_Achr7G04720_001 I 0.864
GSMUA_AchrUn_randomG02900_001 Musa acuminata GSMUA_AchrUn_randomG02900_001 I 0.864
GSMUA_Achr2G18140_001 Musa acuminata GSMUA_Achr2G18140_001 I 0.864
Eucgr.E01043 Eucalyptus grandis Eucgr.E01043 I 0.861
PGSC0003DMG400005528 Solanum tuberosum PGSC0003DMG400005528 I 0.860
PGSC0003DMG400005860 Solanum tuberosum PGSC0003DMG400005860 I 0.860
MTR_8g024770 Medicago truncatula MTR_8g024770 I 0.860
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I 0.860
Solyc10g009290.1 Solanum lycopersicum Solyc10g009290.1 I 0.860
Pm029399 Prunus mume Pm029399 I 0.860
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I 0.860
MTR_8g024790 Medicago truncatula MTR_8g024790 I 0.860
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I 0.860
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I 0.860
Solyc08g008600.2 Solanum lycopersicum Solyc08g008600.2 I 0.860
MLOC_40535 Hordeum vulgare MLOC_40535 N 0.857
Cla016454 Citrullus lanatus Cla016454 I 0.852
VIT_02s0012g01320 Vitis vinifera VIT_02s0012g01320 I 0.852
Solyc09g065100.1 Solanum lycopersicum Solyc09g065100.1 I 0.852
TCM_004403 Theobroma cacao TCM_004403 I 0.852
TCM_015714 Theobroma cacao TCM_015714 I 0.852
Si029106m.g Setaria italica Si029106m.g I 0.852
TT8 Vitis vinifera VIT_07s0104g00090 I 0.852
Ca_07836 Cicer arietinum Ca_07836 I 0.852
cassava8764.m1 Manihot esculenta cassava8764.m1 I 0.852
orange1.1g005651m.g Citrus sinensis orange1.1g005651m.g I 0.852
orange1.1g037798m.g Citrus sinensis orange1.1g037798m.g I 0.852
MDP0000617077 Malus domestica MDP0000617077 I 0.852
MDP0000225680 Malus domestica MDP0000225680 I 0.852
Gorai.007G136400 Gossypium raimondii Gorai.007G136400 I 0.852
Lus10030970.g Linum usitatissimum Lus10030970.g I 0.852
Pavir.Ia03512 Panicum virgatum Pavir.Ia03512 I 0.852
Pavir.J28686 Panicum virgatum Pavir.J28686 I 0.852
Thhalv10028584m.g Eutrema salsugineum Thhalv10028584m.g I 0.852
PK09702.1 Cannabis sativa PK09702.1 D 0.852
SapurV1A.0741s0050 Salix purpurea SapurV1A.0741s0050 I 0.852
SapurV1A.0076s0350 Salix purpurea SapurV1A.0076s0350 I 0.852
Pavir.J38781 Panicum virgatum Pavir.J38781 I 0.852
Gorai.004G215900 Gossypium raimondii Gorai.004G215900 I 0.852
gene27827-v1.0-hybrid Fragaria vesca gene27827-v1.0-hybrid I 0.852
cassava29522.valid.m1 Manihot esculenta cassava29522.valid.m1 I 0.852
cassava45205.m1 Manihot esculenta cassava45205.m1 I 0.852
cassava24625.valid.m1 Manihot esculenta cassava24625.valid.m1 I 0.852
29827.m002528 Ricinus communis 29827.m002528 I 0.852
29647.m002101 Ricinus communis 29647.m002101 I 0.852
Cucsa.313090 Cucumis sativus Cucsa.313090 I 0.852
Aquca_026_00421 Aquilegia coerulea Aquca_026_00421 I 0.852
Eucgr.H01487 Eucalyptus grandis Eucgr.H01487 I 0.852
evm.TU.supercontig_71.72 Carica papaya evm.TU.supercontig_71.72 I 0.852
Ciclev10019118m.g Citrus clementina Ciclev10019118m.g I 0.852
Ciclev10011214m.g Citrus clementina Ciclev10011214m.g I 0.852
Aquca_054_00130 Aquilegia coerulea Aquca_054_00130 I 0.852
Pm020164 Prunus mume Pm020164 I 0.852
Si039973m.g Setaria italica Si039973m.g I 0.852
ORUFI10G20700 Oryza rufipogon ORUFI10G20700 I 0.852
GLYMA02G16670 Glycine max GLYMA02G16670 I 0.852
MLOC_71611 Hordeum vulgare MLOC_71611 I 0.852
MYC2 Oryza sativa OS10G0575000 I 0.852
PGSC0003DMG400012891 Solanum tuberosum PGSC0003DMG400012891 I 0.852
MTR_1g072320 Medicago truncatula MTR_1g072320 I 0.852
OGLUM10G19510 Oryza glumaepatula OGLUM10G19510 I 0.852
OLONG_011820 Oryza longistaminata OLONG_011820 I 0.852
ONIVA10G22030 Oryza nivara ONIVA10G22030 I 0.852
OPUNC10G17860 Oryza punctata OPUNC10G17860 I 0.852
GLYMA10G03140 Glycine max GLYMA10G03140 I 0.852
ORGLA10G0146100 Oryza glaberrima ORGLA10G0146100 I 0.852
LPERR10G15300 Leersia perrieri LPERR10G15300 I 0.852
POPTR_0001s02450 Populus trichocarpa POPTR_0001s02450 I 0.852
BGIOSGA033493 Oryza indica BGIOSGA033493 I 0.852
BRADI1G54070 Brachypodium distachyon BRADI1G54070 I 0.852
Sb02g006390 Sorghum bicolor Sb02g006390 I 0.852
GSMUA_Achr4G16980_001 Musa acuminata GSMUA_Achr4G16980_001 I 0.852
AMTR_s00002p00225810 Amborella trichopoda AMTR_s00002p00225810 I 0.852
AMTR_s00025p00048410 Amborella trichopoda AMTR_s00025p00048410 I 0.852
Sb01g028230 Sorghum bicolor Sb01g028230 I 0.852
BRADI3G34200 Brachypodium distachyon BRADI3G34200 I 0.852
POPTR_0005s23020 Populus trichocarpa POPTR_0005s23020 I 0.852
GSMUA_Achr6G21490_001 Musa acuminata GSMUA_Achr6G21490_001 I 0.852
GRMZM2G001930 Zea mays GRMZM2G001930 I 0.852
PRUPE_ppa002884m2g Prunus persica PRUPE_ppa002884m2g I 0.852
GRMZM2G049229 Zea mays GRMZM2G049229 I 0.852
OMERI07G05880 Oryza meridionalis OMERI07G05880 I 0.849
ONIVA07G05400 Oryza nivara ONIVA07G05400 I 0.849
Gorai.006G216700 Gossypium raimondii Gorai.006G216700 I 0.849
OBART07G07130 Oryza barthii OBART07G07130 I 0.849
LPERR07G06180 Leersia perrieri LPERR07G06180 I 0.849
Lus10000484.g Linum usitatissimum Lus10000484.g I 0.849
Lus10004575.g Linum usitatissimum Lus10004575.g I 0.849
TCM_015640 Theobroma cacao TCM_015640 N 0.849
Lus10004574.g Linum usitatissimum Lus10004574.g I 0.849
orange1.1g010053m.g Citrus sinensis orange1.1g010053m.g N 0.849
Gorai.008G259000 Gossypium raimondii Gorai.008G259000 N 0.849
Ciclev10019730m.g Citrus clementina Ciclev10019730m.g N 0.849
GSMUA_Achr10G07470_001 Musa acuminata GSMUA_Achr10G07470_001 I 0.847
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I 0.847
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I 0.847
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I 0.847
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I 0.847
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I 0.847
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I 0.847
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I 0.847
BHLH14 Arabidopsis thaliana AT4G00870 D 0.847
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I 0.847
MDP0000242554 Malus domestica MDP0000242554 I 0.847
MDP0000224302 Malus domestica MDP0000224302 I 0.847
GLYMA07G05740 Glycine max GLYMA07G05740 I 0.847
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I 0.847
GLYMA16G02320 Glycine max GLYMA16G02320 I 0.847
MDP0000729514 Malus domestica MDP0000729514 I 0.847
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I 0.847
MDP0000859492 Malus domestica MDP0000859492 I 0.847
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I 0.847
MDP0000900024 Malus domestica MDP0000900024 I 0.847
Carubv10001082m.g Capsella rubella Carubv10001082m.g I 0.847
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I 0.847
cassava32651.m1 Manihot esculenta cassava32651.m1 I 0.847
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I 0.847
27964.m000356 Ricinus communis 27964.m000356 I 0.847
27964.m000352 Ricinus communis 27964.m000352 I 0.847
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I 0.847
Cla007989 Citrullus lanatus Cla007989 I 0.847
mgf001993m Mimulus guttatus mgf001993m I 0.847
Al_scaffold_0006_3930 Arabidopsis lyrata Al_scaffold_0006_3930 I 0.847
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I 0.847
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I 0.847
TCM_005064 Theobroma cacao TCM_005064 I 0.847
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I 0.847
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I 0.847
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I 0.847
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I 0.847
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I 0.847
Si015024m.g Setaria italica Si015024m.g N 0.846
Pavir.Fb02191 Panicum virgatum Pavir.Fb02191 N 0.846
Si015026m.g Setaria italica Si015026m.g N 0.846
BRADI4G35400 Brachypodium distachyon BRADI4G35400 N 0.846
Traes_5BL_C753673FD Triticum aestivum Traes_5BL_C753673FD N 0.846
Traes_5DL_F32936F9C Triticum aestivum Traes_5DL_F32936F9C N 0.846
Traes_5BL_E86F89671 Triticum aestivum Traes_5BL_E86F89671 N 0.846
GRMZM2G472671 Zea mays GRMZM2G472671 N 0.846
Si015343m.g Setaria italica Si015343m.g N 0.846
Ca_17603 Cicer arietinum Ca_17603 I 0.846
Sb07g025330 Sorghum bicolor Sb07g025330 N 0.846
Traes_5DL_5DA6E1A09 Triticum aestivum Traes_5DL_5DA6E1A09 N 0.846
Sb07g025340 Sorghum bicolor Sb07g025340 N 0.843
BRADI3G41950 Brachypodium distachyon BRADI3G41950 N 0.843
GSMUA_Achr8G11430_001 Musa acuminata GSMUA_Achr8G11430_001 N 0.843
Pavir.Fb00905 Panicum virgatum Pavir.Fb00905 N 0.843
Pavir.Fa00118 Panicum virgatum Pavir.Fa00118 N 0.843
Bra033273 Brassica rapa Bra033273 I 0.840
Thhalv10007139m.g Eutrema salsugineum Thhalv10007139m.g I 0.840
BHLH13 Arabidopsis thaliana AT1G01260 D 0.840
Sb09g008120 Sorghum bicolor Sb09g008120 I 0.840
AMTR_s00121p00026620 Amborella trichopoda AMTR_s00121p00026620 I 0.840
Bo5g002590 Brassica oleracea Bo5g002590 I 0.840
GLYMA02G09670 Glycine max GLYMA02G09670 I 0.840
LPERR08G19100 Leersia perrieri LPERR08G19100 I 0.840
Bostr.5325s0049 Boechera stricta Bostr.5325s0049 I 0.840
Cagra.1968s0070 Capsella grandiflora Cagra.1968s0070 I 0.840
Carubv10008640m.g Capsella rubella Carubv10008640m.g I 0.840
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.840
GSMUA_Achr3G17620_001 Musa acuminata GSMUA_Achr3G17620_001 I 0.840
Pavir.Ca00449 Panicum virgatum Pavir.Ca00449 I 0.840
Si021549m.g Setaria italica Si021549m.g I 0.840
fgenesh2_kg.1__101__AT1G01260.1 Arabidopsis lyrata fgenesh2_kg.1__101__AT1G01260.1 I 0.840
Pavir.Cb01851 Panicum virgatum Pavir.Cb01851 I 0.840