CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.012G161900
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.012G161900
T050112_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.862
0.740
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.012G161900.1
bHLH
121
170
QSKDHIMAERKRREKLSEKFIALSALVPGLKKMDKATVLGDAIKYMKQLQ
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
236 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ca_05320
Cicer arietinum
Ca_05320
I
0.911
GLYMA17G16741
Glycine max
GLYMA17G16741
I
0.891
GLYMA05G23291
Glycine max
GLYMA05G23291
I
0.889
MTR_4g097940
Medicago truncatula
MTR_4g097940
I
0.889
TRIUR3_26880
Triticum urartu
TRIUR3_26880
I
0.885
BRADI1G10170
Brachypodium distachyon
BRADI1G10170
I
0.885
Traes_4DS_7F3D9E4D9
Triticum aestivum
Traes_4DS_7F3D9E4D9
I
0.885
Traes_4BS_34AF89ACE
Triticum aestivum
Traes_4BS_34AF89ACE
I
0.885
Traes_4AL_F3571097B
Triticum aestivum
Traes_4AL_F3571097B
I
0.885
Pm002304
Prunus mume
Pm002304
I
0.885
PRUPE_ppa007561mg
Prunus persica
PRUPE_ppa007561mg
I
0.885
MLOC_64735
Hordeum vulgare
MLOC_64735
I
0.885
F775_11371
Aegilops tauschii
F775_11371
I
0.885
ORGLA03G0269200
Oryza glaberrima
ORGLA03G0269200
I
0.876
ONIVA03G07570
Oryza nivara
ONIVA03G07570
I
0.876
OPUNC03G26600
Oryza punctata
OPUNC03G26600
I
0.876
OMERI12G15000
Oryza meridionalis
OMERI12G15000
I
0.876
OPUNC12G17950
Oryza punctata
OPUNC12G17950
I
0.876
OLONG_002504
Oryza longistaminata
OLONG_002504
I
0.876
OB03G36530
Oryza brachyantha
OB03G36530
I
0.876
MLOC_42946
Hordeum vulgare
MLOC_42946
I
0.876
LPERR12G16560
Leersia perrieri
LPERR12G16560
I
0.876
OBART12G19700
Oryza barthii
OBART12G19700
I
0.876
OGLUM03G29270
Oryza glumaepatula
OGLUM03G29270
I
0.876
OLONG_017178
Oryza longistaminata
OLONG_017178
I
0.876
ORGLA12G0170500
Oryza glaberrima
ORGLA12G0170500
I
0.876
OGLUM12G21470
Oryza glumaepatula
OGLUM12G21470
I
0.876
OMERI03G25360
Oryza meridionalis
OMERI03G25360
I
0.876
Sb01g012260
Sorghum bicolor
Sb01g012260
I
0.876
Pavir.Ia01038
Panicum virgatum
Pavir.Ia01038
I
0.876
Pavir.Ia01004
Panicum virgatum
Pavir.Ia01004
I
0.876
TRIUR3_05977
Triticum urartu
TRIUR3_05977
I
0.876
Pavir.Ia01059
Panicum virgatum
Pavir.Ia01059
I
0.876
Pavir.Ib04096
Panicum virgatum
Pavir.Ib04096
I
0.876
Pavir.J30022
Panicum virgatum
Pavir.J30022
I
0.876
Pavir.Ib04190
Panicum virgatum
Pavir.Ib04190
I
0.876
Pavir.Ib04188
Panicum virgatum
Pavir.Ib04188
I
0.876
Traes_4DS_6A9EB40A4
Triticum aestivum
Traes_4DS_6A9EB40A4
I
0.876
Si039325m.g
Setaria italica
Si039325m.g
I
0.876
Sb01g012280
Sorghum bicolor
Sb01g012280
I
0.876
LPERR03G24050
Leersia perrieri
LPERR03G24050
I
0.876
OS12G0632600
Oryza sativa
OS12G0632600
I
0.876
Sb06g017460
Sorghum bicolor
Sb06g017460
I
0.876
Sb08g022760
Sorghum bicolor
Sb08g022760
I
0.876
Si036185m.g
Setaria italica
Si036185m.g
I
0.876
Si011972m.g
Setaria italica
Si011972m.g
I
0.876
ORUFI12G22050
Oryza rufipogon
ORUFI12G22050
I
0.876
Si038721m.g
Setaria italica
Si038721m.g
I
0.876
GRMZM2G355469
Zea mays
GRMZM2G355469
I
0.876
BRADI4G00920
Brachypodium distachyon
BRADI4G00920
I
0.876
F775_11635
Aegilops tauschii
F775_11635
I
0.876
GRMZM2G155043
Zea mays
GRMZM2G155043
I
0.876
GRMZM2G068604
Zea mays
GRMZM2G068604
I
0.876
GRMZM2G049686
Zea mays
GRMZM2G049686
I
0.876
BRADI1G12770
Brachypodium distachyon
BRADI1G12770
I
0.876
BGIOSGA037855
Oryza indica
BGIOSGA037855
I
0.876
BGIOSGA010080
Oryza indica
BGIOSGA010080
I
0.876
Lus10011578.g
Linum usitatissimum
Lus10011578.g
I
0.872
Lus10019247.g
Linum usitatissimum
Lus10019247.g
I
0.869
Lus10020503.g
Linum usitatissimum
Lus10020503.g
I
0.867
Lus10012457.g
Linum usitatissimum
Lus10012457.g
I
0.867
MTR_4g097920
Medicago truncatula
MTR_4g097920
I
0.865
Ca_09379
Cicer arietinum
Ca_09379
I
0.865
cassava35671.valid.m1
Manihot esculenta
cassava35671.valid.m1
I
0.864
cassava37087.valid.m1
Manihot esculenta
cassava37087.valid.m1
I
0.864
cassava20178.m1
Manihot esculenta
cassava20178.m1
I
0.864
cassava18197.valid.m1
Manihot esculenta
cassava18197.valid.m1
I
0.864
29804.m001498
Ricinus communis
29804.m001498
I
0.864
Cucsa.218800
Cucumis sativus
Cucsa.218800
I
0.864
Aquca_010_00012
Aquilegia coerulea
Aquca_010_00012
I
0.864
Eucgr.I00634
Eucalyptus grandis
Eucgr.I00634
I
0.864
Ciclev10028925m.g
Citrus clementina
Ciclev10028925m.g
I
0.864
Carubv10025041m.g
Capsella rubella
Carubv10025041m.g
I
0.864
Cagra.5392s0006
Capsella grandiflora
Cagra.5392s0006
I
0.864
28179.m000479
Ricinus communis
28179.m000479
I
0.864
28179.m000478
Ricinus communis
28179.m000478
I
0.864
TCM_006357
Theobroma cacao
TCM_006357
I
0.864
TCM_000895
Theobroma cacao
TCM_000895
I
0.864
AMTR_s00033p00078670
Amborella trichopoda
AMTR_s00033p00078670
I
0.864
Si036393m.g
Setaria italica
Si036393m.g
I
0.864
VIT_03s0088g01240
Vitis vinifera
VIT_03s0088g01240
I
0.864
VIT_07s0205g00160
Vitis vinifera
VIT_07s0205g00160
I
0.864
Pm021008
Prunus mume
Pm021008
I
0.864
Pm002305
Prunus mume
Pm002305
I
0.864
GSMUA_Achr2G08590_001
Musa acuminata
GSMUA_Achr2G08590_001
I
0.864
Cla000123
Citrullus lanatus
Cla000123
I
0.864
Eucgr.I02518
Eucalyptus grandis
Eucgr.I02518
I
0.864
evm.TU.supercontig_129.37
Carica papaya
evm.TU.supercontig_129.37
I
0.864
Pavir.J35103
Panicum virgatum
Pavir.J35103
I
0.864
Pavir.J26871
Panicum virgatum
Pavir.J26871
I
0.864
Pavir.J01849
Panicum virgatum
Pavir.J01849
I
0.864
BGIOSGA013493
Oryza indica
BGIOSGA013493
I
0.864
SapurV1A.0019s0910
Salix purpurea
SapurV1A.0019s0910
I
0.864
SapurV1A.0279s0180
Salix purpurea
SapurV1A.0279s0180
I
0.864
LjT17L12.80.nd
Lotus japonicus
LjT17L12.80.nd
I
0.864
PK11573.1
Cannabis sativa
PK11573.1
I
0.864
PK09122.1
Cannabis sativa
PK09122.1
I
0.864
SapurV1A.3034s0010
Salix purpurea
SapurV1A.3034s0010
I
0.864
orange1.1g021208m.g
Citrus sinensis
orange1.1g021208m.g
I
0.864
MDP0000502440
Malus domestica
MDP0000502440
I
0.864
Gorai.003G034700
Gossypium raimondii
Gorai.003G034700
I
0.864
Gorai.002G211500
Gossypium raimondii
Gorai.002G211500
I
0.864
gene05612-v1.0-hybrid
Fragaria vesca
gene05612-v1.0-hybrid
I
0.864
gene05610-v1.0-hybrid
Fragaria vesca
gene05610-v1.0-hybrid
I
0.864
Gorai.007G228900
Gossypium raimondii
Gorai.007G228900
I
0.864
Lus10003488.g
Linum usitatissimum
Lus10003488.g
I
0.864
MDP0000291132
Malus domestica
MDP0000291132
I
0.864
MDP0000174149
Malus domestica
MDP0000174149
I
0.864
Lus10039639.g
Linum usitatissimum
Lus10039639.g
I
0.864
GSMUA_AchrUn_randomG15440_001
Musa acuminata
GSMUA_AchrUn_randomG15440_001
I
0.864
Si024086m.g
Setaria italica
Si024086m.g
I
0.864
cassava16019.m1
Manihot esculenta
cassava16019.m1
I
0.864
GRMZM2G019806
Zea mays
GRMZM2G019806
I
0.864
POPTR_0009s08500
Populus trichocarpa
POPTR_0009s08500
I
0.864
POPTR_0005s09810
Populus trichocarpa
POPTR_0005s09810
I
0.864
PRUPE_ppa008130mg
Prunus persica
PRUPE_ppa008130mg
I
0.864
PRUPE_ppa017640mg
Prunus persica
PRUPE_ppa017640mg
I
0.864
OGLUM03G32210
Oryza glumaepatula
OGLUM03G32210
I
0.864
GRMZM2G036554
Zea mays
GRMZM2G036554
I
0.864
POPTR_0001s29400
Populus trichocarpa
POPTR_0001s29400
I
0.864
OS03G0725800
Oryza sativa
OS03G0725800
I
0.864
fgenesh2_kg.4__196__AT2G22750.1
Arabidopsis lyrata
fgenesh2_kg.4__196__AT2G22750.1
I
0.864
ORGLA03G0295100
Oryza glaberrima
ORGLA03G0295100
I
0.864
ORUFI03G33950
Oryza rufipogon
ORUFI03G33950
I
0.864
OPUNC03G29750
Oryza punctata
OPUNC03G29750
I
0.864
OMERI03G29350
Oryza meridionalis
OMERI03G29350
I
0.864
ONIVA03G34090
Oryza nivara
ONIVA03G34090
I
0.864
OBART03G32580
Oryza barthii
OBART03G32580
I
0.864
Sb01g009590
Sorghum bicolor
Sb01g009590
I
0.864
SELMODRAFT_34848
Selaginella moellendorffii
SELMODRAFT_34848
I
0.864
GRMZM2G082343
Zea mays
GRMZM2G082343
I
0.864
LPERR03G27220
Leersia perrieri
LPERR03G27220
I
0.864
SELMODRAFT_48361
Selaginella moellendorffii
SELMODRAFT_48361
I
0.864
Solyc01g106460.2
Solanum lycopersicum
Solyc01g106460.2
I
0.862
GLYMA11G04690
Glycine max
GLYMA11G04690
I
0.862
MDP0000318216
Malus domestica
MDP0000318216
I
0.862
Bra039924
Brassica rapa
Bra039924
I
0.862
MDP0000170202
Malus domestica
MDP0000170202
I
0.862
MDP0000159571
Malus domestica
MDP0000159571
I
0.862
Bra030210
Brassica rapa
Bra030210
I
0.862
evm.TU.supercontig_20.63
Carica papaya
evm.TU.supercontig_20.63
I
0.862
Eucgr.H02390
Eucalyptus grandis
Eucgr.H02390
I
0.862
Ciclev10027158m.g
Citrus clementina
Ciclev10027158m.g
I
0.862
PDK_20s1394471g002
Phoenix dactylifera
PDK_20s1394471g002
I
0.862
PGSC0003DMG400005101
Solanum tuberosum
PGSC0003DMG400005101
I
0.862
Thhalv10000426m.g
Eutrema salsugineum
Thhalv10000426m.g
I
0.862
orange1.1g037441m.g
Citrus sinensis
orange1.1g037441m.g
I
0.862
AT2G22750
Arabidopsis thaliana
AT2G22750
D
0.862
Eucgr.H02389
Eucalyptus grandis
Eucgr.H02389
I
0.862
Bo4g150960
Brassica oleracea
Bo4g150960
I
0.862
PDK_20s1524891g002
Phoenix dactylifera
PDK_20s1524891g002
I
0.861
chr2.CM0021.410.nc
Lotus japonicus
chr2.CM0021.410.nc
I
0.861
Thhalv10000251m.g
Eutrema salsugineum
Thhalv10000251m.g
N
0.860
NAI1
Arabidopsis thaliana
AT2G22770
N
0.860
Carubv10023610m.g
Capsella rubella
Carubv10023610m.g
N
0.860
NAI1
Arabidopsis lyrata
fgenesh2_kg.4__198__AT2G22770.1
N
0.860
Cagra.0882s0006
Capsella grandiflora
Cagra.0882s0006
N
0.860
Bostr.19427s0044
Boechera stricta
Bostr.19427s0044
N
0.860
Pavir.Ia03339
Panicum virgatum
Pavir.Ia03339
I
0.855
Cagra.6066s0006
Capsella grandiflora
Cagra.6066s0006
I
0.853
Bo3g153150
Brassica oleracea
Bo3g153150
I
0.853
Carubv10006834m.g
Capsella rubella
Carubv10006834m.g
I
0.853
BHLH25
Arabidopsis thaliana
AT4G37850
I
0.853
MTR_5g014640
Medicago truncatula
MTR_5g014640
I
0.853
Thhalv10025715m.g
Eutrema salsugineum
Thhalv10025715m.g
I
0.853
Bra011790
Brassica rapa
Bra011790
I
0.853
Bra010617
Brassica rapa
Bra010617
I
0.853
SapurV1A.0821s0050
Salix purpurea
SapurV1A.0821s0050
I
0.853
Bo1g003350
Brassica oleracea
Bo1g003350
I
0.853
TRIUR3_13152
Triticum urartu
TRIUR3_13152
I
0.852
F775_12608
Aegilops tauschii
F775_12608
I
0.852
GRMZM2G120021
Zea mays
GRMZM2G120021
I
0.852
gene07355-v1.0-hybrid
Fragaria vesca
gene07355-v1.0-hybrid
I
0.851
orange1.1g026436m.g
Citrus sinensis
orange1.1g026436m.g
I
0.851
GLYMA07G30420
Glycine max
GLYMA07G30420
I
0.851
Ciclev10027504m.g
Citrus clementina
Ciclev10027504m.g
I
0.851
Eucgr.H02385
Eucalyptus grandis
Eucgr.H02385
I
0.851
VIT_00s0927g00010
Vitis vinifera
VIT_00s0927g00010
I
0.851
VIT_00s0824g00020
Vitis vinifera
VIT_00s0824g00020
I
0.851
Ca_02263
Cicer arietinum
Ca_02263
I
0.851
Si011709m.g
Setaria italica
Si011709m.g
I
0.851
MTR_5g014520
Medicago truncatula
MTR_5g014520
I
0.850
Ca_02264
Cicer arietinum
Ca_02264
I
0.850
GLYMA01G40620
Glycine max
GLYMA01G40620
I
0.850
mg008709m
Mimulus guttatus
mg008709m
I
0.849
Gorai.008G087600
Gossypium raimondii
Gorai.008G087600
I
0.849
Gorai.007G229000
Gossypium raimondii
Gorai.007G229000
I
0.849
mg004185m
Mimulus guttatus
mg004185m
I
0.849
Gorai.003G034600
Gossypium raimondii
Gorai.003G034600
I
0.849
TCM_000894
Theobroma cacao
TCM_000894
I
0.849
chr5.CM0158.350.nd
Lotus japonicus
chr5.CM0158.350.nd
I
0.848
chr3.LjT47G05.50.nc
Lotus japonicus
chr3.LjT47G05.50.nc
I
0.848
GRMZM2G095899
Zea mays
GRMZM2G095899
I
0.846
BGIOSGA013293
Oryza indica
BGIOSGA013293
I
0.846
TRIUR3_29908
Triticum urartu
TRIUR3_29908
I
0.846
Si022171m.g
Setaria italica
Si022171m.g
I
0.846
OBART03G29020
Oryza barthii
OBART03G29020
I
0.846
OGLUM03G29200
Oryza glumaepatula
OGLUM03G29200
I
0.846
F775_11133
Aegilops tauschii
F775_11133
I
0.846
Sb01g012250
Sorghum bicolor
Sb01g012250
I
0.846
OPUNC03G26580
Oryza punctata
OPUNC03G26580
I
0.846
ONIVA03G30250
Oryza nivara
ONIVA03G30250
I
0.846
ORGLA03G0268800
Oryza glaberrima
ORGLA03G0268800
I
0.846
ORUFI03G30180
Oryza rufipogon
ORUFI03G30180
I
0.846
PDK_20s1464821g001
Phoenix dactylifera
PDK_20s1464821g001
I
0.845
OS03G0671800
Oryza sativa
OS03G0671800
I
0.844
MLOC_68896
Hordeum vulgare
MLOC_68896
N
0.844
TRIUR3_05978
Triticum urartu
TRIUR3_05978
N
0.844
Traes_4DS_E4442B2FF
Triticum aestivum
Traes_4DS_E4442B2FF
N
0.844
F775_03506
Aegilops tauschii
F775_03506
N
0.844
TRIUR3_15085
Triticum urartu
TRIUR3_15085
N
0.844
MLOC_36423
Hordeum vulgare
MLOC_36423
N
0.844
F775_10654
Aegilops tauschii
F775_10654
N
0.844
Bo8g100890
Brassica oleracea
Bo8g100890
N
0.841
Thhalv10000494m.g
Eutrema salsugineum
Thhalv10000494m.g
N
0.841
Bra039926
Brassica rapa
Bra039926
N
0.841
Cagra.0747s0001
Capsella grandiflora
Cagra.0747s0001
N
0.841
Carubv10024768m.g
Capsella rubella
Carubv10024768m.g
N
0.841
Bra030208
Brassica rapa
Bra030208
N
0.841
chr2.CM0021.380.nc
Lotus japonicus
chr2.CM0021.380.nc
I
0.841
Bostr.19427s0043
Boechera stricta
Bostr.19427s0043
N
0.841
Bo4g151000
Brassica oleracea
Bo4g151000
N
0.841
GSMUA_Achr4G23070_001
Musa acuminata
GSMUA_Achr4G23070_001
I
0.841
BHLH19
Arabidopsis thaliana
AT2G22760
N
0.841
GLYMA17G16720
Glycine max
GLYMA17G16720
I
0.840
estExt_fgenesh1_pg.C_420092
Physcomitrella patens
estExt_fgenesh1_pg.C_420092
I
0.840
estExt_fgenesh1_pg.C_310143
Physcomitrella patens
estExt_fgenesh1_pg.C_310143
I
0.840
GLYMA05G23530
Glycine max
GLYMA05G23530
I
0.840
GSMUA_Achr8G05170_001
Musa acuminata
GSMUA_Achr8G05170_001
I
0.840
GSMUA_Achr7G27600_001
Musa acuminata
GSMUA_Achr7G27600_001
I
0.840
Lus10039640.g
Linum usitatissimum
Lus10039640.g
I
0.840
GSMUA_Achr4G03160_001
Musa acuminata
GSMUA_Achr4G03160_001
I
0.840
LPERR12G15010
Leersia perrieri
LPERR12G15010
N
0.840
GSMUA_Achr3G26180_001
Musa acuminata
GSMUA_Achr3G26180_001
I
0.840
Carubv10007002m.g
Capsella rubella
Carubv10007002m.g
I
0.838
Cagra.1225s0009
Capsella grandiflora
Cagra.1225s0009
I
0.838