Alligator_sinensis_CCG005035.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005035.1 T133114_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bcl6b
M00128_2.00 		Mus musculus
NYYYTYCYWNNN
NNNWRGRARRRN		 PBM
Badis et al.(2009)
Bcl6b_0961 		0.794 0.843
BCL6B
M02896_2.00 		Homo sapiens
TGCTTTCTAGGAATTMM
KKAATTCCTAGAAAGCA		 SELEX
Jolma et al.(2013)
BCL6B_1 		0.794 0.835
BCL6B
M04499_2.00 		Homo sapiens
NNGCTTTCKAGGAAHN
NDTTCCTMGAAAGCNN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_1 		0.794 0.835
BCL6B
M04500_2.00 		Homo sapiens
NDTTCCTCGATTRCVN
NBGYAATCGAGGAAHN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_HT-SELEX_2 		0.794 0.835
BCL6B
M04501_2.00 		Homo sapiens
NHGCTTTCTAGGAAHN
NDTTCCTAGAAAGCDN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_1 		0.794 0.835
BCL6B
M04502_2.00 		Homo sapiens
NWTTCCTAGATTACRN
NYGTAATCTAGGAAWN		 SELEX
Yin et al.(2017)
BCL6B_eDBD_Methyl-HT-SELEX_2 		0.794 0.835
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005035.1 C2H2 ZF 178 200
Alligator_sinensis_CCG005035.1 C2H2 ZF 206 228
Alligator_sinensis_CCG005035.1 C2H2 ZF 234 256
Alligator_sinensis_CCG005035.1 C2H2 ZF 262 284
Alligator_sinensis_CCG005035.1 C2H2 ZF 290 313

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000000166 Sarcophilus harrisii ENSSHAG00000000166 I 0.798
Bcl6b Rattus norvegicus ENSRNOG00000059956 I 0.796
BCL6B Otolemur garnettii ENSOGAG00000027908 I 0.796
ENSOARG00000009610 Ovis aries ENSOARG00000009610 I 0.796
ENSMEUG00000000375 Macropus eugenii ENSMEUG00000000375 I 0.795
BCL6B Pan troglodytes ENSPTRG00000008656 I 0.794
BCL6B Bos taurus ENSBTAG00000020854 I 0.794
ENSPPYG00000007891 Pongo abelii ENSPPYG00000007891 I 0.794
BCL6B Procavia capensis ENSPCAG00000013548 I 0.794
ENSCSAG00000012171 Chlorocebus sabaeus ENSCSAG00000012171 I 0.794
ENSPANG00000024201 Papio anubis ENSPANG00000024201 I 0.794
BCL6B Sus scrofa ENSSSCG00000017927 I 0.794
ENSP00000293805 Macaca fascicularis ENSP00000293805 I 0.794
Myotis_brandtii_BCL6B_10021005 Myotis brandtii Myotis_brandtii_BCL6B_10021005 I 0.794
ENSP00000293805-D1 Bos grunniens ENSP00000293805-D1 I 0.794
BCL6B Tupaia belangeri ENSTBEG00000005792 I 0.794
ENSSTOG00000006365 Ictidomys tridecemlineatus ENSSTOG00000006365 I 0.794
BCL6B Cavia porcellus ENSCPOG00000004066 I 0.794
BCL6B Ochotona princeps ENSOPRG00000006070 I 0.794
BCL6B Loxodonta africana ENSLAFG00000006642 I 0.794
ENSAMEG00000016319 Ailuropoda melanoleuca ENSAMEG00000016319 I 0.794
BCL6B Gorilla gorilla ENSGGOG00000009787 I 0.794
BCL6B Homo sapiens ENSG00000161940 D 0.794
Bcl6b Dipodomys ordii ENSDORG00000005538 I 0.794
BCL6B Equus caballus ENSECAG00000023771 I 0.794
BCL6B Macaca mulatta ENSMMUG00000016268 I 0.794
ENSMLUG00000003564 Myotis lucifugus ENSMLUG00000003564 I 0.794
Bcl6b Mus musculus ENSMUSG00000000317 D 0.794
ENSNLEG00000009340 Nomascus leucogenys ENSNLEG00000009340 I 0.794
ENSMPUG00000010670 Mustela putorius furo ENSMPUG00000010670 I 0.794
BCL6B Monodelphis domestica ENSMODG00000006161 I 0.793
BCL6B Canis familiaris ENSCAFG00000015968 I 0.793
ENSPSIG00000013071 Pelodiscus sinensis ENSPSIG00000013071 I 0.791
BCL6B Dasypus novemcinctus ENSDNOG00000035586 I 0.790
bcl6ab Tetraodon nigroviridis ENSTNIG00000007834 I 0.786
bcl6ab Takifugu rubripes ENSTRUG00000001788 I 0.786
BCL6B Tursiops truncatus ENSTTRG00000003982 I 0.783
bcl6ab Oryzias latipes ENSORLG00000004563 I 0.776