RSKR_0000732400 (Rhabditophanes kr3021)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 RSKR_0000732400 T155907_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp4
M01862_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2014)
pTH4998 		0.764 0.768
Sp4
M00133_2.00 		Mus musculus
HMCGCCCMYN
NRKGGGCGKD		 PBM
Badis et al.(2009)
Sp4_1011 		0.764 0.768
Sp4
M05859_2.00 		Mus musculus
DGNYMCGCCCHNN
NNDGGGCGKRNCH		 SMiLE-seq
Isakova et al.(2017)
SP4 		0.764 0.768
Sp4
M08975_2.00 		Mus musculus
BYHDKCYCCGCCYYYHBSBB
VVSVDRRRGGCGGRGMHDRV		 Misc
Kulakovskiy et al.(2013)
SP4_MOUSE.H11MO.0.B 		0.764 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000732400.1 C2H2 ZF 293 315
RSKR_0000732400.1 C2H2 ZF 321 345
RSKR_0000732400.1 C2H2 ZF 351 373

Links

Other C2H2 ZF family TFs
Other Rhabditophanes kr3021 TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.803
RSKR_0000732300 Rhabditophanes kr3021 RSKR_0000732300 I 0.800
XP_002166590.1 Hydra magnipapillata XP_002166590.1 I 0.779
Aqu1.217456 Amphimedon queenslandica Aqu1.217456 I 0.779
DME_0000423301 Dracunculus medinensis DME_0000423301 I 0.774
ASIM_0001129301 Anisakis simplex ASIM_0001129301 I 0.770
TriadG7637 Trichoplax adhaerens TriadG7637 I 0.767
Ocbimv22017043m.g Octopus bimaculoides Ocbimv22017043m.g I 0.767
ENSAMXG00000015260 Astyanax mexicanus ENSAMXG00000015260 I 0.766
sp3a Danio rerio ENSDARG00000001549 I 0.766
HHAL002953-PA Halyomorpha halys HHAL002953-PA I 0.764
NEMVEDRAFT_v1g27142 Nematostella vectensis NEMVEDRAFT_v1g27142 I 0.764
sp4 Danio rerio ENSDARG00000005186 I 0.764
ISCW020450 Ixodes scapularis ISCW020450 I 0.764
ENSLACG00000011942 Latimeria chalumnae ENSLACG00000011942 I 0.764
Sp4 Mus musculus ENSMUSG00000025323 D 0.764
Sp4 Rattus norvegicus ENSRNOG00000005472 I 0.764
ENSAMXG00000004713 Astyanax mexicanus ENSAMXG00000004713 I 0.764
ENSGACG00000006667 Gasterosteus aculeatus ENSGACG00000006667 I 0.764
MhA1_Contig599.frz3.gene7 Meloidogyne hapla MhA1_Contig599.frz3.gene7 I 0.760
HCOI00688600 Haemonchus contortus HCOI00688600 I 0.758
NECAME_13378 Necator americanus NECAME_13378 I 0.758
NBR_0001206901 Nippostrongylus brasiliensis NBR_0001206901 I 0.758
HPBE_0001438901 Heligmosomoides bakeri HPBE_0001438901 I 0.758
HPLM_0000529101 Haemonchus placei HPLM_0000529101 I 0.758
ANCCAN_00594 Ancylostoma caninum ANCCAN_00594 I 0.758
ACOC_0001203801 Angiostrongylus costaricensis ACOC_0001203801 I 0.758
DICVIV_09031 Dictyocaulus viviparus DICVIV_09031 I 0.758
ANCCEY_05940 Ancylostoma ceylanicum ANCCEY_05940 I 0.758
ANCDUO_10264 Ancylostoma duodenale ANCDUO_10264 I 0.758
EFV52203 Trichinella spiralis EFV52203 I 0.757
BGLB013141 Biomphalaria glabrata BGLB013141 I 0.757
ENSPMAG00000001574 Petromyzon marinus ENSPMAG00000001574 I 0.757
L898_g7955 Steinernema monticolum L898_g7955 I 0.757
L892_g17070 Steinernema scapterisci L892_g17070 I 0.757
D917_04158 Trichinella nativa D917_04158 I 0.757
L596_g19604 Steinernema carpocapsae L596_g19604 I 0.757
L889_g32073 Steinernema feltiae L889_g32073 I 0.757
L893_g2044 Steinernema glaseri L893_g2044 I 0.757