ENSFALG00000013344 (Ficedula albicollis)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSFALG00000013344 T197993_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.986 0.986
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.862 0.862
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.862 0.862
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.862 0.862
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.862 0.862
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.862 0.862
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.848 0.848
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.754 0.754
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.754 0.754
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.746 0.746
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.746 0.746
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.746 0.746
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.746 0.746
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.746 0.746
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.746 0.746
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.746 0.746
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.746 0.746
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.746 0.746
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.746 0.746
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.746 0.746
gcm
M03764_2.00
Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV

BATGCGGGYVBBRCCCGCATD
SELEX
Nitta et al.(2015)
gcm_1
0.667 0.667
gcm
M03765_2.00
Drosophila melanogaster
VATGCKGGYRCCMGCATV

BATGCKGGYRCCMGCATB
SELEX
Nitta et al.(2015)
gcm_2
0.667 0.667
gcm
M03766_2.00
Drosophila melanogaster
YATGCGGGTACCAGCATV

BATGCTGGTACCCGCATR
SELEX
Nitta et al.(2015)
gcm_3
0.667 0.667
gcm
M10605_2.00
Drosophila melanogaster
NDNATGCGGGYNB

VNRCCCGCATNHN
Transfac
Matys et al.(2006)
I$GCM_01
0.667 0.667
gcm2
M02026_2.00
Drosophila melanogaster
ATGCGGGY

RCCCGCAT
PBM
Weirauch et al.(2014)
pTH8361
0.652 0.652
gcm2
M03767_2.00
Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN

NATGCGGGYNNNRCCCGCATN
SELEX
Nitta et al.(2015)
gcm2_1
0.652 0.652
gcm2
M03768_2.00
Drosophila melanogaster
BATGCKGGTACCMGCATV

BATGCKGGTACCMGCATV
SELEX
Nitta et al.(2015)
gcm2_2
0.652 0.652
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000013930 GCM 19 156

Links

Other GCM family TFs
Other Ficedula albicollis TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL000623 Aedes aegypti AAEL000623 I 0.671
AAEL000631 Aedes aegypti AAEL000631 I 0.614
AALB008012 Anopheles albimanus AALB008012 I 0.629
AALB008013 Anopheles albimanus AALB008013 I 0.650
Aan_R001196 Calypte anna Aan_R001196 I 0.739
Aan_R001550 Calypte anna Aan_R001550 I 0.986
AARA011979 Anopheles arabiensis AARA011979 I 0.614
AARA011980 Anopheles arabiensis AARA011980 I 0.657
AATE008476 Anopheles atroparvus AATE008476 I 0.650
AATE020589 Anopheles atroparvus AATE020589 I 0.621
ACEP23384 Atta cephalotes ACEP23384 I 0.657
ACHR001414 Anopheles christyi ACHR001414 I 0.664
ACHR004082 Anopheles christyi ACHR004082 I 0.614
ACOM031025 Anopheles coluzzii ACOM031025 I 0.655
ACOM031032 Anopheles coluzzii ACOM031032 I 0.614
ACUA009622 Anopheles culicifacies ACUA009622 I 0.664
ACUA018162 Anopheles culicifacies ACUA018162 I 0.614
ACYPI34548 Acyrthosiphon pisum ACYPI34548 I 0.650
ADAC002327 Anopheles darlingi ADAC002327 I 0.650
ADIR000711 Anopheles dirus ADIR000711 I 0.657
AEPI007160 Anopheles epiroticus AEPI007160 I 0.671
AEPI007161 Anopheles epiroticus AEPI007161 I 0.614
AFAF000663 Anopheles farauti AFAF000663 I 0.614
AFAF005680 Anopheles farauti AFAF005680 I 0.659
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.732
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.993
AFUN009836 Anopheles funestus AFUN009836 I 0.614
AFUN009837 Anopheles funestus AFUN009837 I 0.657
AGAP007782 Anopheles gambiae AGAP007782 I 0.614
AGAP007783 Anopheles gambiae AGAP007783 I 0.664
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.662
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.899
AMAM003661 Anopheles maculatus AMAM003661 I 0.657
AMAM005757 Anopheles maculatus AMAM005757 I 0.661
AMEC020313 Anopheles melas AMEC020313 I 0.650
AMEM005966 Anopheles merus AMEM005966 I 0.655
AMEM008520 Anopheles merus AMEM008520 I 0.614
AMIN006367 Anopheles minimus AMIN006367 I 0.614
AMIN006368 Anopheles minimus AMIN006368 I 0.664
AQUA003641 Anopheles quadriannulatus AQUA003641 I 0.614
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.664
ASIS002985 Anopheles sinensis ASIS002985 I 0.650
ASIS021139 Anopheles sinensis ASIS021139 I 0.629
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.657
ASTEI01673 Anopheles stephensi ASTEI01673 I 0.614
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.679
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.732
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.978
CapteG133139 Capitella teleta CapteG133139 I 0.632
Cflo_04549--XP_393815.2_APIME Camponotus floridanus Cflo_04549--XP_393815.2_APIME I 0.650
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.671
CLEC013329 Cimex lectularius CLEC013329 I 0.664
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.913
CPIJ006640 Culex quinquefasciatus CPIJ006640 I 0.657
CpipJ_CPIJ006640 Culex pipiens CpipJ_CPIJ006640 I 0.657
DAPPUDRAFT_26189 Daphnia pulex DAPPUDRAFT_26189 I 0.659
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.746
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.848
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.870
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.739
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.877
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.978
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.739
GCM1 Bos taurus ENSBTAG00000008148 I 0.732
GCM2 Bos taurus ENSBTAG00000018787 I 0.877
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.732
GCM1 Canis familiaris ENSCAFG00000002273 I 0.739
GCM2 Canis familiaris ENSCAFG00000009747 I 0.862
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.862
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.746
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.884
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.746
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.877
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.877
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.746
gcm2 Danio rerio ENSDARG00000045413 I 0.899
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.855
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.759
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.737
GCM1 Equus caballus ENSECAG00000014228 I 0.746
GCM2 Equus caballus ENSECAG00000017632 I 0.862
GCM2 Erinaceus europaeus ENSEEUG00000005577 I 0.637
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.765
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.630
GCM2 Echinops telfairi ENSETEG00000012473 I 0.814
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.739
GCM2 Felis catus ENSFCAG00000001608 I 0.877
GCM1 Felis catus ENSFCAG00000009490 I 0.739
GCM2 Homo sapiens ENSG00000124827 D 0.862
GCM1 Homo sapiens ENSG00000137270 D 0.746
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.862
GCM2 Gallus gallus ENSGALG00000012768 I 0.971
GCM1 Gallus gallus ENSGALG00000016316 I 0.739
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.746
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.862
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.833
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.710
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.870
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.833
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.725
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.855
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.725
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.746
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.964
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.746
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.725
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.884
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.717
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.855
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.877
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.746
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.906
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.754
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.877
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.739
Gcm2 Mus musculus ENSMUSG00000021362 I 0.848
Gcm1 Mus musculus ENSMUSG00000023333 D 0.754
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.870
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.746
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.877
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.732
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.884
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.748
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.855
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.725
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.862
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.884
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.720
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.833
gcm2 Oryzias latipes ENSORLG00000019715 I 0.855
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.746
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.877
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.877
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.884
GCM2 Procavia capensis ENSPCAG00000011887 I 0.826
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.870
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.775
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.870
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.746
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.925
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.739
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.870
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.746
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.819
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.725
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.746
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.855
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.884
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.754
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.739
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.855
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.719
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.739
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.855
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.986
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.739
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.848
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.879
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.862
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.717
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.870
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.877
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.725
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.862
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.721
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.877
gcm Drosophila melanogaster FBgn0014179 D 0.657
gcm2 Drosophila melanogaster FBgn0019809 D 0.643
GA11505 Drosophila pseudoobscura FBgn0071556 I 0.650
GA17734 Drosophila pseudoobscura FBgn0077744 I 0.643
GF21907 Drosophila ananassae FBgn0098907 I 0.664
GF22779 Drosophila ananassae FBgn0099773 I 0.643
GG10041 Drosophila erecta FBgn0102353 I 0.643
GG24019 Drosophila erecta FBgn0116158 I 0.657
GH10675 Drosophila grimshawi FBgn0118156 I 0.643
GH11056 Drosophila grimshawi FBgn0118537 I 0.650
GI11073 Drosophila mojavensis FBgn0133835 I 0.643
GI17574 Drosophila mojavensis FBgn0140318 I 0.659
GL18919 Drosophila persimilis FBgn0156520 I 0.643
GL19218 Drosophila persimilis FBgn0156817 I 0.650
GM12386 Drosophila sechellia FBgn0167323 I 0.657
GM17569 Drosophila sechellia FBgn0172477 I 0.643
GD22349 Drosophila simulans FBgn0193756 I 0.629
GJ17916 Drosophila virilis FBgn0205084 I 0.659
GJ18313 Drosophila virilis FBgn0205472 I 0.652
GK23810 Drosophila willistoni FBgn0225772 I 0.636
GK23867 Drosophila willistoni FBgn0225829 I 0.629
GE10457 Drosophila yakuba FBgn0228318 I 0.657
GE18856 Drosophila yakuba FBgn0236239 I 0.643
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.657
GB45031 Apis mellifera GB45031 I 0.657
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.993
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.739
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.633
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.695
HelroG145480 Helobdella robusta HelroG145480 I 0.621
HMEL005671 Heliconius melpomene HMEL005671 I 0.671
Hsal_09608--XP_393815.2_APIME Harpegnathos saltator Hsal_09608--XP_393815.2_APIME I 0.650
ISCW022914 Ixodes scapularis ISCW022914 I 0.659
KGM_05743 Danaus plexippus KGM_05743 I 0.671
L798_07938 Zootermopsis nevadensis L798_07938 I 0.643
LCUP008083 Lucilia cuprina LCUP008083 I 0.643
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.657
MCINX011946 Melitaea cinxia MCINX011946 I 0.671
MDOA003644 Musca domestica MDOA003644 I 0.643
MDOA004732 Musca domestica MDOA004732 I 0.650
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.717
NV17454 Nasonia vitripennis NV17454 I 0.652
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.657
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.795
PHUM436840 Pediculus humanus PHUM436840 I 0.643
PPAI003635 Phlebotomus papatasi PPAI003635 I 0.671
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.754
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.870
RPRC001299 Rhodnius prolixus RPRC001299 I 0.657
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.659
SINV21711 Solenopsis invicta SINV21711 I 0.657
SMAR010130 Strigamia maritima SMAR010130 I 0.729
Tal_R009935 Tyto alba Tal_R009935 I 0.732
Tal_R009965 Tyto alba Tal_R009965 I 0.740
TC014730 Tribolium castaneum TC014730 I 0.671
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.650
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.870
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.703
gcm2.S Xenopus laevis XB-GENE-866131 I 0.848
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.759
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.664