GCM1 (Meleagris gallopavo)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSMGAG00000013927 T198012_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM1
M02021_2.00		 Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.891 0.891
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.884 0.884
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.877 0.877
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.877 0.877
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.877 0.877
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.877 0.877
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.877 0.877
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.877 0.877
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.877 0.877
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.877 0.877
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.877 0.877
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.855 0.855
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.746 0.746
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.732 0.732
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.717 0.717
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.696 0.696
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.696 0.696
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.696 0.696
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.696 0.696
gcm2
M02026_2.00 		Drosophila melanogaster
ATGCGGGY
RCCCGCAT		 PBM
Weirauch et al.(2014)
pTH8361 		0.609 0.609
gcm2
M03767_2.00 		Drosophila melanogaster
NATGCGGGYNNNRCCCGCATN
NATGCGGGYNNNRCCCGCATN		 SELEX
Nitta et al.(2015)
gcm2_1 		0.609 0.609
gcm2
M03768_2.00 		Drosophila melanogaster
BATGCKGGTACCMGCATV
BATGCKGGTACCMGCATV		 SELEX
Nitta et al.(2015)
gcm2_2 		0.609 0.609
For this family, TFs with SR scores > 0.607 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02021_2.00 GCM 39 176

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000014734 GCM 39 176

Links

Other GCM family TFs
Other Meleagris gallopavo TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.993
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.993
GCM1 Gallus gallus ENSGALG00000016316 I 0.986
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.978
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.971
Aan_R001196 Calypte anna Aan_R001196 I 0.971
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.971
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.964
Tal_R009935 Tyto alba Tal_R009935 I 0.949
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.935
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.906
GCM1 Tupaia belangeri ENSTBEG00000007899 I 0.900
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.899
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.899
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.891
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.891
Gcm1 Mus musculus ENSMUSG00000023333 D 0.891
GCM1 Choloepus hoffmanni ENSCHOG00000003116 I 0.887
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.884
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.877
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.877
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.877
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.877
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.877
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.877
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.877
GCM1 Homo sapiens ENSG00000137270 D 0.877
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.877
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.876
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.870
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.870
GCM1 Canis familiaris ENSCAFG00000002273 I 0.870
GCM1 Felis catus ENSFCAG00000009490 I 0.870
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.869
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.864
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.862
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.862
GCM1 Equus caballus ENSECAG00000014228 I 0.862
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.862
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.861
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.861
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.855
GCM1 Bos taurus ENSBTAG00000008148 I 0.855
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.855
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.854
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.851
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.848
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.848
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.848
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.848
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.848
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.848
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.847
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.843
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.838
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.833
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.804
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.797
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.797
ENSPMAG00000001027 Petromyzon marinus ENSPMAG00000001027 I 0.772
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.754
gcm2 Danio rerio ENSDARG00000045413 I 0.754
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.754
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.754
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.746
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.746
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.746
Aan_R001550 Calypte anna Aan_R001550 I 0.746
GCM2 Gallus gallus ENSGALG00000012768 I 0.746
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.746
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.746
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.746
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.746
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.741
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.739
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.739
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.738
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.732
gcm2 Oryzias latipes ENSORLG00000019715 I 0.732
gcm2.S Xenopus laevis XB-GENE-866131 I 0.732
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.732
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.732
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.732
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.732
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.725
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.725
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.725
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.717
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.717
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.717
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.717
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.710
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.710
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.710
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.710
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.703
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.703
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.703
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.703
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.703
GCM2 Bos taurus ENSBTAG00000018787 I 0.703
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.696
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.696
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.696
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.696
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.696
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.696
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.696
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.696
Gcm2 Mus musculus ENSMUSG00000021362 I 0.696
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.696
GCM2 Homo sapiens ENSG00000124827 D 0.696
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.696
GCM2 Equus caballus ENSECAG00000017632 I 0.696
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.689
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.688
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.688
GCM2 Canis familiaris ENSCAFG00000009747 I 0.688
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.688
GCM2 Felis catus ENSFCAG00000001608 I 0.688
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.688
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.688
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.688
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.681
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.681
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.681
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.681
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.678
SMAR010130 Strigamia maritima SMAR010130 I 0.678
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.674
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.674
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.674
GCM2 Procavia capensis ENSPCAG00000011887 I 0.674
GCM2 Echinops telfairi ENSETEG00000012473 I 0.669
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.650
fgenesh2_pg.scaffold_122000051 Branchiostoma floridae fgenesh2_pg.scaffold_122000051 I 0.636
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.636
AFUN009837 Anopheles funestus AFUN009837 I 0.629
AMAM005757 Anopheles maculatus AMAM005757 I 0.624
AFAF005680 Anopheles farauti AFAF005680 I 0.623
AMAM003661 Anopheles maculatus AMAM003661 I 0.621
ASTEI01672 Anopheles stephensi ASTEI01672 I 0.621
ACHR001414 Anopheles christyi ACHR001414 I 0.621
ACUA009622 Anopheles culicifacies ACUA009622 I 0.621
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.621
AQUA003642 Anopheles quadriannulatus AQUA003642 I 0.621
AMIN006368 Anopheles minimus AMIN006368 I 0.621
AAEL000623 Aedes aegypti AAEL000623 I 0.621
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.621
AGAP007783 Anopheles gambiae AGAP007783 I 0.621
AEPI007160 Anopheles epiroticus AEPI007160 I 0.621
gw.285.88.1 Branchiostoma floridae gw.285.88.1 I 0.617
TRE_0001360101 Trichobilharzia regenti TRE_0001360101 I 0.615
BGIBMGA006182 Bombyx mori BGIBMGA006182 I 0.614
MCINX011946 Melitaea cinxia MCINX011946 I 0.614
KGM_05743 Danaus plexippus KGM_05743 I 0.614
HMEL005671 Heliconius melpomene HMEL005671 I 0.614
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.614
GB45031 Apis mellifera GB45031 I 0.614
AARA011980 Anopheles arabiensis AARA011980 I 0.614
ACEP23384 Atta cephalotes ACEP23384 I 0.614
ADIR000711 Anopheles dirus ADIR000711 I 0.614
ACOM031025 Anopheles coluzzii ACOM031025 I 0.609
AMEM005966 Anopheles merus AMEM005966 I 0.609