GCM1 (Otolemur garnettii)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSOGAG00000007879 T198033_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GCM1
M02020_2.00 		Homo sapiens
NVTVNGGGN
NCCCNBABN		 PBM
Weirauch et al.(2014)
pTH7965 		0.942 0.942
GCM1
M03068_2.00 		Homo sapiens
BATGCGGGTR
YACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_1 		0.942 0.942
GCM1
M03069_2.00 		Homo sapiens
RTRYKGGYRCCMGYAN
NTRCKGGYRCCMRYAY		 SELEX
Jolma et al.(2013)
GCM1_2 		0.942 0.942
GCM1
M03070_2.00 		Homo sapiens
BATGCGGGTRS
SYACCCGCATV		 SELEX
Jolma et al.(2013)
GCM1_3 		0.942 0.942
GCM1
M04883_2.00 		Homo sapiens
RTGSGGGBV
BVCCCSCAY		 SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX 		0.942 0.942
GCM1
M05868_2.00 		Homo sapiens
ATGCGGGYV
BRCCCGCAT		 SMiLE-seq
Isakova et al.(2017)
GCM1 		0.942 0.942
GCM1
M10603_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMA_Q4 		0.942 0.942
GCM1
M10604_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCM_Q2 		0.942 0.942
GCM1
M04884_2.00 		Homo sapiens
ATRNKGGYV
BRCCMNYAT		 SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX 		0.942 0.942
Gcm1
M00168_2.00 		Mus musculus
NVTRVGGGY
RCCCBYABN		 PBM
Badis et al.(2009)
Gcm1_3732 		0.899 0.899
Gcm1
M02022_2.00 		Rattus norvegicus
NNRTRVGGGY
RCCCBYAYNN		 PBM
Weirauch et al.(2014)
pTH9283 		0.891 0.891
XP_004449939.1
M02027_2.00 		Dasypus novemcinctus
RTRSGGGY
RCCCSYAY		 PBM
Weirauch et al.(2014)
pTH9259 		0.891 0.891
GCM1
M02021_2.00 		Meleagris gallopavo
VTVNKGGYNN
NNRCCMNBAB		 PBM
Weirauch et al.(2014)
pTH8653 		0.862 0.862
GCM2
M02023_2.00 		Taeniopygia guttata
NRTRHKGGYN
NRCCMDYAYN		 PBM
Weirauch et al.(2014)
pTH9341 		0.725 0.725
gcm2
M02024_2.00 		Tetraodon nigroviridis
ATRCGGGY
RCCCGYAT		 PBM
Weirauch et al.(2014)
pTH9386 		0.703 0.703
ENSTRUG00000003586
M02025_2.00 		Takifugu rubripes
NRTRNGGGYN
NRCCCNYAYN		 PBM
Weirauch et al.(2014)
pTH9357 		0.696 0.696
GCM2
M03067_2.00 		Homo sapiens
NATGCGGGYD
HRCCCGCATN		 SELEX
Jolma et al.(2013)
GCM2_1 		0.688 0.688
GCM2
M04881_2.00 		Homo sapiens
RTGCGGGYN
NRCCCGCAY		 SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX 		0.688 0.688
GCM2
M10602_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GCMB_Q2 		0.688 0.688
GCM2
M04882_2.00 		Homo sapiens
ATRHKGGYN
NRCCMDYAT		 SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX 		0.688 0.688
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000007058 GCM 30 167

Links

Other GCM family TFs
Other Otolemur garnettii TFs

141 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GCM1 Homo sapiens ENSG00000137270 D 0.942
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.942
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.942
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.942
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.942
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.942
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.942
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.942
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.942
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.935
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.935
GCM1 Felis catus ENSFCAG00000009490 I 0.928
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.928
GCM1 Canis familiaris ENSCAFG00000002273 I 0.928
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.922
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.920
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.913
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.913
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.913
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.913
GCM1 Bos taurus ENSBTAG00000008148 I 0.913
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.913
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.906
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.906
Gcm1 Mus musculus ENSMUSG00000023333 D 0.899
GCM1 Equus caballus ENSECAG00000014228 I 0.899
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.899
Gcm1 Dipodomys ordii ENSDORG00000003627 I 0.898
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.898
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.898
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.898
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.897
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.891
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.891
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.891
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.884
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.884
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.884
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.870
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.870
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.862
Aan_R001196 Calypte anna Aan_R001196 I 0.862
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.862
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.862
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.860
GCM1 Gallus gallus ENSGALG00000016316 I 0.855
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.848
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.848
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.841
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.841
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.839
Tal_R009935 Tyto alba Tal_R009935 I 0.833
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.833
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.804
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.783
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.777
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.754
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.754
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.746
gcm2 Danio rerio ENSDARG00000045413 I 0.732
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.732
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.725
Aan_R001550 Calypte anna Aan_R001550 I 0.725
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.725
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.725
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.725
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.725
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.725
GCM2 Gallus gallus ENSGALG00000012768 I 0.725
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.720
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.717
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.717
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.716
gcm2.S Xenopus laevis XB-GENE-866131 I 0.710
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.710
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.710
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.703
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.703
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.703
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.703
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.703
gcm2 Oryzias latipes ENSORLG00000019715 I 0.703
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.703
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.696
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.696
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.696
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.696
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.696
GCM2 Bos taurus ENSBTAG00000018787 I 0.696
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.696
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.696
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.696
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.696
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.688
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.688
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.688
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.688
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.688
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.688
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.688
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.688
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.688
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.688
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.688
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.688
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.688
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.688
GCM2 Homo sapiens ENSG00000124827 D 0.688
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.688
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.681
GCM2 Felis catus ENSFCAG00000001608 I 0.681
GCM2 Canis familiaris ENSCAFG00000009747 I 0.681
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.681
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.681
Gcm2 Mus musculus ENSMUSG00000021362 I 0.681
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.681
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.681
GCM2 Equus caballus ENSECAG00000017632 I 0.674
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.674
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.674
GCM2 Procavia capensis ENSPCAG00000011887 I 0.674
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.674
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.674
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.667
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.667
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.667
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.659
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.659
GCM2 Echinops telfairi ENSETEG00000012473 I 0.653
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.629
SMAR010130 Strigamia maritima SMAR010130 I 0.627
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.627
CapteG133139 Capitella teleta CapteG133139 I 0.625
TC014730 Tribolium castaneum TC014730 I 0.621
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.621
YQE_03062 Dendroctonus ponderosae YQE_03062 I 0.621
LDEC012509 Leptinotarsa decemlineata LDEC012509 I 0.621
AMAM005757 Anopheles maculatus AMAM005757 I 0.615
AFUN009837 Anopheles funestus AFUN009837 I 0.614
tetur09g06060 Tetranychus urticae tetur09g06060 I 0.614
AFAF005680 Anopheles farauti AFAF005680 I 0.609