Gcm1 (Dipodomys ordii)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03615 (GCM) IPR003902 ENSDORG00000003627 T197985_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Gcm1
M02022_2.00
Rattus norvegicus
NNRTRVGGGY

RCCCBYAYNN
PBM
Weirauch et al.(2014)
pTH9283
0.942 0.942
Gcm1
M00168_2.00
Mus musculus
NVTRVGGGY

RCCCBYABN
PBM
Badis et al.(2009)
Gcm1_3732
0.934 0.934
GCM1
M02020_2.00
Homo sapiens
NVTVNGGGN

NCCCNBABN
PBM
Weirauch et al.(2014)
pTH7965
0.912 0.912
GCM1
M03068_2.00
Homo sapiens
BATGCGGGTR

YACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_1
0.912 0.912
GCM1
M03069_2.00
Homo sapiens
RTRYKGGYRCCMGYAN

NTRCKGGYRCCMRYAY
SELEX
Jolma et al.(2013)
GCM1_2
0.912 0.912
GCM1
M03070_2.00
Homo sapiens
BATGCGGGTRS

SYACCCGCATV
SELEX
Jolma et al.(2013)
GCM1_3
0.912 0.912
GCM1
M04883_2.00
Homo sapiens
RTGSGGGBV

BVCCCSCAY
SELEX
Yin et al.(2017)
GCM1_eDBD_HT-SELEX
0.912 0.912
GCM1
M05868_2.00
Homo sapiens
ATGCGGGYV

BRCCCGCAT
SMiLE-seq
Isakova et al.(2017)
GCM1
0.912 0.912
GCM1
M10603_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMA_Q4
0.912 0.912
GCM1
M10604_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCM_Q2
0.912 0.912
GCM1
M04884_2.00
Homo sapiens
ATRNKGGYV

BRCCMNYAT
SELEX
Yin et al.(2017)
GCM1_eDBD_Methyl-HT-SELEX
0.912 0.912
XP_004449939.1
M02027_2.00
Dasypus novemcinctus
RTRSGGGY

RCCCSYAY
PBM
Weirauch et al.(2014)
pTH9259
0.905 0.905
GCM1
M02021_2.00
Meleagris gallopavo
VTVNKGGYNN

NNRCCMNBAB
PBM
Weirauch et al.(2014)
pTH8653
0.876 0.876
GCM2
M02023_2.00
Taeniopygia guttata
NRTRHKGGYN

NRCCMDYAYN
PBM
Weirauch et al.(2014)
pTH9341
0.737 0.737
ENSTRUG00000003586
M02025_2.00
Takifugu rubripes
NRTRNGGGYN

NRCCCNYAYN
PBM
Weirauch et al.(2014)
pTH9357
0.693 0.693
GCM2
M03067_2.00
Homo sapiens
NATGCGGGYD

HRCCCGCATN
SELEX
Jolma et al.(2013)
GCM2_1
0.693 0.693
GCM2
M04881_2.00
Homo sapiens
RTGCGGGYN

NRCCCGCAY
SELEX
Yin et al.(2017)
GCM2_FL_HT-SELEX
0.693 0.693
GCM2
M10602_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GCMB_Q2
0.693 0.693
GCM2
M04882_2.00
Homo sapiens
ATRHKGGYN

NRCCMDYAT
SELEX
Yin et al.(2017)
GCM2_FL_Methyl-HT-SELEX
0.693 0.693
gcm2
M02024_2.00
Tetraodon nigroviridis
ATRCGGGY

RCCCGYAT
PBM
Weirauch et al.(2014)
pTH9386
0.686 0.686
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000003392 GCM 30 166

Links

Other GCM family TFs
Other Dipodomys ordii TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSCPOG00000006856 Cavia porcellus ENSCPOG00000006856 I 0.942
Gcm1 Rattus norvegicus ENSRNOG00000007932 D 0.935
Gcm1 Mus musculus ENSMUSG00000023333 D 0.928
GCM1 Oryctolagus cuniculus ENSOCUG00000009246 I 0.925
ENSSHAG00000015905 Sarcophilus harrisii ENSSHAG00000015905 I 0.920
ENSMEUG00000004103 Macropus eugenii ENSMEUG00000004103 I 0.920
GCM1 Canis familiaris ENSCAFG00000002273 I 0.913
ENSMPUG00000008870 Mustela putorius furo ENSMPUG00000008870 I 0.913
GCM1 Equus caballus ENSECAG00000014228 I 0.913
GCM1 Monodelphis domestica ENSMODG00000018803 I 0.913
GCM1 Felis catus ENSFCAG00000009490 I 0.913
ENSAMEG00000005755 Ailuropoda melanoleuca ENSAMEG00000005755 I 0.912
GCM1 Vicugna pacos ENSVPAG00000006379 I 0.912
ENSNLEG00000003544 Nomascus leucogenys ENSNLEG00000003544 I 0.906
GCM1 Macaca mulatta ENSMMUG00000022083 I 0.906
ENSP00000259803 Macaca fascicularis ENSP00000259803 I 0.906
GCM1 Homo sapiens ENSG00000137270 D 0.906
ENSBTAP00000010709-D1 Bos grunniens ENSBTAP00000010709-D1 I 0.906
GCM1 Gorilla gorilla ENSGGOG00000006527 I 0.906
ENSOARG00000015312 Ovis aries ENSOARG00000015312 I 0.906
ENSPPYG00000016719 Pongo abelii ENSPPYG00000016719 I 0.906
GCM1 Pan troglodytes ENSPTRG00000018288 I 0.906
GCM1 Bos taurus ENSBTAG00000008148 I 0.906
ENSSSCG00000002630 Sus scrofa ENSSSCG00000002630 I 0.906
ENSCSAG00000013148 Chlorocebus sabaeus ENSCSAG00000013148 I 0.906
GCM1 Callithrix jacchus ENSCJAG00000011189 I 0.906
XP_004449939.1 Dasypus novemcinctus XP_004449939.1 D 0.905
GCM1 Dasypus novemcinctus ENSDNOG00000016682 I 0.905
GCM1 Pteropus vampyrus ENSPVAG00000013341 I 0.899
GCM1 Loxodonta africana ENSLAFG00000012093 I 0.899
GCM1 Otolemur garnettii ENSOGAG00000007879 I 0.898
GCM1 Ochotona princeps ENSOPRG00000003290 I 0.898
GCM1 Erinaceus europaeus ENSEEUG00000013606 I 0.892
GCM1 Myotis lucifugus ENSMLUG00000002762 I 0.891
ENSMICG00000002274 Microcebus murinus ENSMICG00000002274 I 0.891
Myotis_brandtii_Gcm1_10005135 Myotis brandtii Myotis_brandtii_Gcm1_10005135 I 0.891
GCM1 Tursiops truncatus ENSTTRG00000015250 I 0.884
ENSSTOG00000022342 Ictidomys tridecemlineatus ENSSTOG00000022342 I 0.884
GCM1 Meleagris gallopavo ENSMGAG00000013927 D 0.876
ENSPSIG00000013518 Pelodiscus sinensis ENSPSIG00000013518 I 0.870
Aan_R001196 Calypte anna Aan_R001196 I 0.870
ENSFALG00000001854 Ficedula albicollis ENSFALG00000001854 I 0.870
ENSAPLG00000004160 Anas platyrhynchos ENSAPLG00000004160 I 0.870
ENSSTOG00000014763 Ictidomys tridecemlineatus ENSSTOG00000014763 I 0.868
GCM1 Gallus gallus ENSGALG00000016316 I 0.862
ENSTGUG00000012867 Taeniopygia guttata ENSTGUG00000012867 I 0.861
Gfo_R013721 Geospiza fortis Gfo_R013721 I 0.855
ENSTSYG00000000507 Tarsius syrichta ENSTSYG00000000507 I 0.855
Afo_R000272 Aptenodytes forsteri Afo_R000272 I 0.854
Brh_R000788 Buceros rhinoceros Brh_R000788 I 0.854
Tal_R009935 Tyto alba Tal_R009935 I 0.841
Pvit_03812 Pogona vitticeps Pvit_03812 I 0.833
ENSACAG00000008561 Anolis carolinensis ENSACAG00000008561 I 0.814
gcm1.S Xenopus laevis XB-GENE-6252686 I 0.790
ENSETEG00000005181 Echinops telfairi ENSETEG00000005181 I 0.775
Alligator_sinensis_CCG000160.1 Alligator sinensis Alligator_sinensis_CCG000160.1 I 0.769
ENSLACG00000003372 Latimeria chalumnae ENSLACG00000003372 I 0.754
ENSLOCG00000016883 Lepisosteus oculatus ENSLOCG00000016883 I 0.739
Brh_R007088 Buceros rhinoceros Brh_R007088 I 0.739
ENSPMAG00000009211 Petromyzon marinus ENSPMAG00000009211 I 0.739
ENSFALG00000013344 Ficedula albicollis ENSFALG00000013344 I 0.737
gcm2 Danio rerio ENSDARG00000045413 I 0.732
GCM2 Taeniopygia guttata ENSTGUG00000005756 D 0.732
Afo_R013226 Aptenodytes forsteri Afo_R013226 I 0.732
Gfo_R006501 Geospiza fortis Gfo_R006501 I 0.732
Aan_R001550 Calypte anna Aan_R001550 I 0.732
ENSAPLG00000002817 Anas platyrhynchos ENSAPLG00000002817 I 0.725
ENSAMXG00000006073 Astyanax mexicanus ENSAMXG00000006073 I 0.723
GCM2 Gallus gallus ENSGALG00000012768 I 0.723
GCM2 Meleagris gallopavo ENSMGAG00000003533 I 0.717
GCM2 Anolis carolinensis ENSACAG00000008677 I 0.715
gcm2.S Xenopus laevis XB-GENE-866131 I 0.710
ENSOARG00000015521 Ovis aries ENSOARG00000015521 I 0.710
Pvit_11235 Pogona vitticeps Pvit_11235 I 0.710
ENSPSIG00000004698 Pelodiscus sinensis ENSPSIG00000004698 I 0.710
gcm2 Xenopus tropicalis XB-GENE-492156 I 0.708
ENSMICG00000004238 Microcebus murinus ENSMICG00000004238 I 0.703
Alligator_sinensis_CCG008975.1 Alligator sinensis Alligator_sinensis_CCG008975.1 I 0.703
ENSLACG00000009363 Latimeria chalumnae ENSLACG00000009363 I 0.703
GCM2 Ornithorhynchus anatinus ENSOANG00000007191 I 0.701
ENSTSYG00000006813 Tarsius syrichta ENSTSYG00000006813 I 0.701
Cmyd_10006831 Chelonia mydas Cmyd_10006831 I 0.701
ENSTRUG00000001670 Takifugu rubripes ENSTRUG00000001670 I 0.698
ENSP00000368805-D1 Bos grunniens ENSP00000368805-D1 I 0.696
ENSLOCG00000013145 Lepisosteus oculatus ENSLOCG00000013145 I 0.696
GCM2 Cavia porcellus ENSCPOG00000011254 I 0.696
gcm2 Oryzias latipes ENSORLG00000019715 I 0.696
ENSPANG00000026314 Papio anubis ENSPANG00000026314 I 0.696
GCM2 Bos taurus ENSBTAG00000018787 I 0.696
ENSONIG00000009885 Oreochromis niloticus ENSONIG00000009885 I 0.696
ENSTRUG00000003586 Takifugu rubripes ENSTRUG00000003586 D 0.693
GCM2 Oryctolagus cuniculus ENSOCUG00000017698 I 0.693
GCM2 Felis catus ENSFCAG00000001608 I 0.693
GCM2 Callithrix jacchus ENSCJAG00000019182 I 0.693
GCM2 Otolemur garnettii ENSOGAG00000012176 I 0.693
ENSNLEG00000000645 Nomascus leucogenys ENSNLEG00000000645 I 0.693
ENSXMAG00000002726 Xiphophorus maculatus ENSXMAG00000002726 I 0.688
GCM2 Macaca mulatta ENSMMUG00000007719 I 0.688
GCM2 Homo sapiens ENSG00000124827 D 0.688
ENSMPUG00000000633 Mustela putorius furo ENSMPUG00000000633 I 0.688
GCM2 Gorilla gorilla ENSGGOG00000023360 I 0.688
ENSP00000368805 Macaca fascicularis ENSP00000368805 I 0.688
Gcm2 Mus musculus ENSMUSG00000021362 I 0.688
ENSCSAG00000007467 Chlorocebus sabaeus ENSCSAG00000007467 I 0.688
GCM2 Canis familiaris ENSCAFG00000009747 I 0.688
ENSSHAG00000010590 Sarcophilus harrisii ENSSHAG00000010590 I 0.688
GCM2 Tupaia belangeri ENSTBEG00000006181 I 0.688
GCM2 Pan troglodytes ENSPTRG00000017724 I 0.688
GCM2 Tursiops truncatus ENSTTRG00000003674 I 0.688
ENSPPYG00000016228 Pongo abelii ENSPPYG00000016228 I 0.688
ENSPFOG00000008781 Poecilia formosa ENSPFOG00000008781 I 0.688
GCM2 Equus caballus ENSECAG00000017632 I 0.686
gcm2 Gasterosteus aculeatus ENSGACG00000001157 I 0.681
GCM2 Choloepus hoffmanni ENSCHOG00000011562 I 0.681
ENSAMEG00000002669 Ailuropoda melanoleuca ENSAMEG00000002669 I 0.681
GCM2 Monodelphis domestica ENSMODG00000010371 I 0.681
Gcm2 Rattus norvegicus ENSRNOG00000015008 I 0.681
GCM2 Ochotona princeps ENSOPRG00000012641 I 0.681
ENSSTOG00000009563 Ictidomys tridecemlineatus ENSSTOG00000009563 I 0.681
gcm2 Tetraodon nigroviridis ENSTNIG00000005042 D 0.681
ENSGMOG00000012709 Gadus morhua ENSGMOG00000012709 I 0.674
GCM2 Dasypus novemcinctus ENSDNOG00000003701 I 0.674
GCM2 Vicugna pacos ENSVPAG00000003006 I 0.674
GCM2 Procavia capensis ENSPCAG00000011887 I 0.674
GCM2 Myotis lucifugus ENSMLUG00000004637 I 0.667
GCM2 Loxodonta africana ENSLAFG00000007475 I 0.664
GCM2 Pteropus vampyrus ENSPVAG00000004876 I 0.657
Ogr12931 Ophisaurus gracilis Ogr12931 I 0.644
GCM2 Echinops telfairi ENSETEG00000012473 I 0.644
CGI_10019940 Crassostrea gigas CGI_10019940 I 0.614
Ocbimv22027544m.g Octopus bimaculoides Ocbimv22027544m.g I 0.614
Sakowv30018670m.g Saccoglossus kowalevskii Sakowv30018670m.g I 0.613
gw.943.3.1 Branchiostoma floridae gw.943.3.1 I 0.610
SMAR010130 Strigamia maritima SMAR010130 I 0.610