cassava39895.m1 (Manihot esculenta)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 cassava39895.m1 T227125_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZHD7
M02155_2.00 		Oryza sativa
NNWAANNNNN
NNNNNTTWNN		 PBM
Weirauch et al.(2014)
pTH6076 		0.708 0.600
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava39895.m1 Homeodomain 176 234

Links

Other Homeodomain family TFs
Other Manihot esculenta TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0004s14270 Populus trichocarpa POPTR_0004s14270 I 0.828
SapurV1A.0185s0100 Salix purpurea SapurV1A.0185s0100 I 0.828
29983.m003297 Ricinus communis 29983.m003297 I 0.798
Eucgr.I00022 Eucalyptus grandis Eucgr.I00022 I 0.778
SELMODRAFT_59936 Selaginella moellendorffii SELMODRAFT_59936 I 0.750
SELMODRAFT_49899 Selaginella moellendorffii SELMODRAFT_49899 I 0.750
Si020227m.g Setaria italica Si020227m.g I 0.730
Pavir.Aa00802 Panicum virgatum Pavir.Aa00802 I 0.730
Sb04g030480 Sorghum bicolor Sb04g030480 I 0.730
GRMZM2G069365 Zea mays GRMZM2G069365 I 0.730
MLOC_18998 Hordeum vulgare MLOC_18998 I 0.713
Gorai.012G046200 Gossypium raimondii Gorai.012G046200 I 0.712
GLYMA20G35690 Glycine max GLYMA20G35690 I 0.712
OMERI02G28440 Oryza meridionalis OMERI02G28440 I 0.708
ZHD7 Oryza sativa OS02G0706600 D 0.708
LPERR02G24020 Leersia perrieri LPERR02G24020 I 0.708
Pavir.Ab02855 Panicum virgatum Pavir.Ab02855 I 0.708
OGLUM02G30190 Oryza glumaepatula OGLUM02G30190 I 0.708
OPUNC02G27120 Oryza punctata OPUNC02G27120 I 0.708
Q0DYA2_ORYSJ Oryza sativa Q0DYA2_ORYSJ I 0.708
Ca_12172 Cicer arietinum Ca_12172 I 0.704
Ciclev10027184m.g Citrus clementina Ciclev10027184m.g I 0.690
mgf026503m Mimulus guttatus mgf026503m I 0.677
Lus10015900.g Linum usitatissimum Lus10015900.g I 0.674
TCM_001660 Theobroma cacao TCM_001660 I 0.674
mgf024641m Mimulus guttatus mgf024641m I 0.666
Ca_02034 Cicer arietinum Ca_02034 I 0.664
MDP0000804580 Malus domestica MDP0000804580 I 0.663
PRUPE_ppa020272mg Prunus persica PRUPE_ppa020272mg I 0.661
gene14755-v1.0-hybrid Fragaria vesca gene14755-v1.0-hybrid I 0.643
Carubv10028391m.g Capsella rubella Carubv10028391m.g I 0.640
Traes_4AL_5659286D11 Triticum aestivum Traes_4AL_5659286D11 N 0.605
Pavir.J22932 Panicum virgatum Pavir.J22932 N 0.605