estExt_fgenesh1_pm.C_chr_5.10316 (Pichia stipitis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 estExt_fgenesh1_pm.C_chr_5.10316 T227348_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YHP1
M02191_2.00 		Saccharomyces cerevisiae
NWWATKRNN
NNYMATWWN		 PBM
Weirauch et al.(2014)
pTH6381 		0.754 0.614
YHP1
M08423_2.00 		Saccharomyces cerevisiae
TAATTG
CAATTA		 ChIP-chip
Mathelier et al.(2014)
MA0426.1 		0.754 0.614
YHP1
M08573_2.00 		Saccharomyces cerevisiae
WNTAATTR
YAATTANW		 Misc
DeBoer et al.(2011)
YDR451C_716 		0.754 0.614
YHP1
M10797_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$YHP1_01 		0.754 0.614
YOX1
M00058_2.00 		Saccharomyces cerevisiae
HTWAATTR
YAATTWAD		 PBM
Badis et al.(2008)
YOX1_2073 		0.727 0.632
YOX1
M01552_2.00 		Saccharomyces cerevisiae
BWWATDR
YHATWWV		 PBM
Zhu et al.(2009)
Yox1 		0.727 0.632
YOX1
M07487_2.00 		Saccharomyces cerevisiae
YTAATTWN
NWAATTAR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0433.1 		0.727 0.632
YOX1
M08575_2.00 		Saccharomyces cerevisiae
YTAATTWN
NWAATTAR		 Misc
DeBoer et al.(2011)
YML027W_498 		0.727 0.632
yox1
M02174_2.00 		Schizosaccharomyces pombe
NNHHATDDNN
NNHHATDDNN		 PBM
Weirauch et al.(2014)
pTH6057 		0.662 0.456
ATEG_04171
M02059_2.00 		Aspergillus terreus
BWWATKRNNN
NNNYMATWWV		 PBM
Weirauch et al.(2014)
pTH5871 		0.611 0.491
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pm.C_chr_5.10316 Homeodomain 151 207

Links

Other Homeodomain family TFs
Other Pichia stipitis TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PICST_65833 Scheffersomyces stipitis PICST_65833 I 0.867
SPAPADRAFT_57590 Spathaspora passalidarum SPAPADRAFT_57590 I 0.859
DEHA2F22286g Debaryomyces hansenii DEHA2F22286g I 0.855
HPODL_02118 Ogataea parapolymorpha HPODL_02118 I 0.853
G210_2310 Candida maltosa G210_2310 I 0.842
CTRG_04888 Candida tropicalis CTRG_04888 I 0.839
CaO19.7017 Candida albicans CaO19.7017 I 0.837
CD36_70900 Candida dubliniensis CD36_70900 I 0.837
LELG_05443 Lodderomyces elongisporus LELG_05443 I 0.837
CLUG_04271 Candida lusitaniae CLUG_04271 I 0.836
CLUG_04271 Clavispora lusitaniae CLUG_04271 I 0.836
GNLVRS01_PISO0N03203g Millerozyma farinosa GNLVRS01_PISO0N03203g I 0.833
GNLVRS01_PISO0M03048g Millerozyma farinosa GNLVRS01_PISO0M03048g I 0.833
CANTEDRAFT_113041 Candida tenuis CANTEDRAFT_113041 I 0.831
SAKL0G05896g Lachancea kluyveri SAKL0G05896g I 0.815
AACERI_AaceriAER314W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAER314W I 0.813
AGOS_AER314W Ashbya gossypii AGOS_AER314W I 0.813
YALI0_E20449g Yarrowia lipolytica YALI0_E20449g I 0.801
NDAI_0C00850 Naumovozyma dairenensis NDAI_0C00850 I 0.790
CORT_0H00310 Candida orthopsilosis CORT_0H00310 I 0.790
TBLA_0E02960 Tetrapisispora blattae TBLA_0E02960 I 0.790
PGUG_00382 Candida guilliermondii PGUG_00382 I 0.790
PGUG_00382 Meyerozyma guilliermondii PGUG_00382 I 0.790
CPAG_00635 Candida parapsilosis CPAG_00635 I 0.790
Kwal_18450 Kluyveromyces waltii Kwal_18450 I 0.787
KLTH0G04686g Kluyveromyces thermotolerans KLTH0G04686g I 0.787
LALA0_S09e00364g Lachancea lanzarotensis LALA0_S09e00364g I 0.787
KLTH0G04686g Lachancea thermotolerans KLTH0G04686g I 0.787
KNAG_0B03460 Kazachstania naganishii KNAG_0B03460 I 0.779
KUCA_T00000773001 Kuraishia capsulata KUCA_T00000773001 I 0.779
JL09_g4323 Pichia kudriavzevii JL09_g4323 I 0.779
Scas_Contig641.12 Saccharomyces castellii Scas_Contig641.12 I 0.774
NCAS_0H02770 Naumovozyma castellii NCAS_0H02770 I 0.774
PAS_chr2-1_0784 Komagataella pastoris PAS_chr2-1_0784 I 0.772
XP_002491722.1 Pichia pastoris XP_002491722.1 I 0.772
BN7_6497 Wickerhamomyces ciferrii BN7_6497 I 0.760
5532_YDR451C Saccharomyces bayanus 5532_YDR451C I 0.754
5231_YDR451C Saccharomyces mikatae 5231_YDR451C I 0.754
SU7_2763 Saccharomyces arboricola SU7_2763 I 0.754
5594_YDR451C Saccharomyces paradoxus 5594_YDR451C I 0.754
YHP1 Saccharomyces cerevisiae YDR451C D 0.754
SKUD_123402 Saccharomyces kudriavzevii SKUD_123402 I 0.754
Ecym_4103 Eremothecium cymbalariae Ecym_4103 I 0.750
ZYRO0D13596g Zygosaccharomyces rouxii ZYRO0D13596g I 0.744
ZBAI_03698 Zygosaccharomyces bailii ZBAI_03698 I 0.744
ZBAI_09382 Zygosaccharomyces bailii ZBAI_09382 I 0.744
TPHA_0K00360 Tetrapisispora phaffii TPHA_0K00360 I 0.743
KAFR_0C05600 Kazachstania africana KAFR_0C05600 I 0.734
GSTUM_00011138001 Tuber melanosporum GSTUM_00011138001 I 0.730
TDEL_0A04320 Torulaspora delbrueckii TDEL_0A04320 I 0.728
SU7_2475 Saccharomyces arboricola SU7_2475 I 0.727
YOX1 Saccharomyces cerevisiae YML027W D 0.727
17440_YML027W Saccharomyces paradoxus 17440_YML027W I 0.727
Kpol_1004p50 Vanderwaltozyma polyspora Kpol_1004p50 I 0.722
CAGL0G07249g Candida glabrata CAGL0G07249g I 0.721
TPHA_0D02630 Tetrapisispora phaffii TPHA_0D02630 I 0.708
SOCG_04925 Schizosaccharomyces octosporus SOCG_04925 I 0.706
SPPG_04779 Spizellomyces punctatus SPPG_04779 I 0.700
Kpol_1023p80 Vanderwaltozyma polyspora Kpol_1023p80 I 0.699
SPOG_04875 Schizosaccharomyces cryophilus SPOG_04875 I 0.696
KLLA0_B01584g Kluyveromyces lactis KLLA0_B01584g I 0.679
AUEXF2481DRAFT_40998 Aureobasidium subglaciale AUEXF2481DRAFT_40998 I 0.672
M438DRAFT_345498 Aureobasidium pullulans M438DRAFT_345498 I 0.672
M437DRAFT_82573 Aureobasidium melanogenum M437DRAFT_82573 I 0.672
PNEG_03146 Pneumocystis murina PNEG_03146 I 0.669
PredSwiss_CON591.1 Pneumocystis carinii PredSwiss_CON591.1 I 0.669
BOTBODRAFT_25870 Botryobasidium botryosum BOTBODRAFT_25870 I 0.668
DOTSEDRAFT_142040 Dothistroma septosporum DOTSEDRAFT_142040 I 0.663
yox1 Schizosaccharomyces pombe SPBC21B10.13c D 0.662
PV09_05311 Verruconis gallopava PV09_05311 I 0.659
SPPG_01429 Spizellomyces punctatus SPPG_01429 I 0.656
PIIN_05295 Piriformospora indica PIIN_05295 I 0.656
SJAG_01157 Schizosaccharomyces japonicus SJAG_01157 I 0.650
PLEOSDRAFT_1075550 Pleurotus ostreatus PLEOSDRAFT_1075550 I 0.639
H072_1197 Dactylellina haptotyla H072_1197 I 0.635
SETTUDRAFT_126230 Setosphaeria turcica SETTUDRAFT_126230 I 0.630
AB00260.1 Alternaria brassicicola AB00260.1 I 0.630
COCCADRAFT_90442 Bipolaris zeicola COCCADRAFT_90442 I 0.630
LEMA_P079180.1 Leptosphaeria maculans LEMA_P079180.1 I 0.630
COCMIDRAFT_2266 Bipolaris oryzae COCMIDRAFT_2266 I 0.630
COCSADRAFT_125307 Bipolaris sorokiniana COCSADRAFT_125307 I 0.630
COCVIDRAFT_88516 Bipolaris victoriae COCVIDRAFT_88516 I 0.630
estExt_Genewise1.C_11468 Cochliobolus heterostrophus C5 estExt_Genewise1.C_11468 I 0.630
COCC4DRAFT_127765 Bipolaris maydis COCC4DRAFT_127765 I 0.630
J056_000182 Wallemia ichthyophaga J056_000182 I 0.630
TBLA_0D01390 Tetrapisispora blattae TBLA_0D01390 I 0.629
DRE_07453 Drechslerella stenobrocha DRE_07453 I 0.627
DACRYDRAFT_108097 Dacryopinax sp DACRYDRAFT_108097 I 0.626
AOL_s00075g18 Arthrobotrys oligospora AOL_s00075g18 I 0.620
MVLG_02993 Microbotryum violaceum MVLG_02993 I 0.619
FIBRA_04336 Fibroporia radiculosa FIBRA_04336 I 0.618
PDIP_75510 Penicillium digitatum PDIP_75510 I 0.616
Pc18g00190 Penicillium chrysogenum Pc18g00190 I 0.616
PCH_Pc18g00190 Penicillium rubens PCH_Pc18g00190 I 0.616
EPUS_07220 Endocarpon pusillum EPUS_07220 I 0.616
gw1.54.52.1 Phycomyces blakesleeanus gw1.54.52.1 I 0.612
U727_00433932271 Penicillium solitum U727_00433932271 I 0.611
V499_00333 Pseudogymnoascus pannorum V499_00333 I 0.611
fgenesh1_pm.00866_#_491 Aspergillus carbonarius fgenesh1_pm.00866_#_491 I 0.611
PMAA_076490 Penicillium marneffei PMAA_076490 I 0.611
MPH_01872 Macrophomina phaseolina MPH_01872 I 0.611
CADAORAG00001369 Aspergillus oryzae CADAORAG00001369 I 0.611
ACLA_040020 Aspergillus clavatus CADACLAG00003199 I 0.611
CADANGAG00002342 Aspergillus niger CADANGAG00002342 I 0.611
TSTA_096850 Talaromyces stipitatus TSTA_096850 I 0.611
SNOG_10542 Stagonospora nodorum SNOG_10542 I 0.611
EURHEDRAFT_516147 Aspergillus ruber EURHEDRAFT_516147 I 0.611
ATEG_04171 Aspergillus terreus CADATEAG00009984 D 0.611
CADAFLAG00002414 Aspergillus flavus CADAFLAG00002414 I 0.611
PDE_04931 Penicillium oxalicum PDE_04931 I 0.611
RHTO_03185 Rhodosporidium toruloides RHTO_03185 I 0.611
SNOG_10542 Phaeosphaeria nodorum SNOG_10542 I 0.611
PVAR5_3236 Byssochlamys spectabilis PVAR5_3236 I 0.611
PMAA_076490 Talaromyces marneffei PMAA_076490 I 0.611
PEX1_077160 Penicillium expansum PEX1_077160 I 0.611
PITC_036250 Penicillium italicum PITC_036250 I 0.611
GMDG_01589 Pseudogymnoascus destructans GMDG_01589 I 0.611
SCHCODRAFT_238623 Schizophyllum commune SCHCODRAFT_238623 I 0.609
fgeneshPB_pg.5__518 Phycomyces blakesleeanus fgeneshPB_pg.5__518 I 0.607
fgeneshMC_pg.10_#_259 Mucor circinelloides fgeneshMC_pg.10_#_259 I 0.607
RO3G_03673 Rhizopus oryzae RO3G_03673 I 0.607
KNAG_0C02770 Kazachstania naganishii KNAG_0C02770 I 0.604
fgenesh1_pg.C_scaffold_6000346 Sporobolomyces roseus fgenesh1_pg.C_scaffold_6000346 N 0.603
BDDG_04023 Blastomyces dermatitidis BDDG_04023 I 0.601
PAAG_11867 Paracoccidioides sp lutzii PAAG_11867 I 0.601
HCBG_03004 Histoplasma capsulatum HCBG_03004 I 0.601
PABG_04211 Paracoccidioides brasiliensis PABG_04211 I 0.601
M407DRAFT_21315 Tulasnella calospora M407DRAFT_21315 I 0.599