Bra029226 (Brassica rapa)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00447 (HSF_DNA-bind) IPR000232 Bra029226 T239869_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSF4
M03325_2.00 		Homo sapiens
GAANNTTCBVGAA
TTCBVGAANNTTC		 SELEX
Jolma et al.(2013)
HSF4_1 		0.343 0.386
HSF4
M05509_2.00 		Homo sapiens
VGAABVTTCKVGAAN
NTTCBMGAABVTTCB		 SELEX
Yin et al.(2017)
HSF4_eDBD_HT-SELEX 		0.343 0.386
HSF4
M10862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HSF4_Q3 		0.343 0.386
HSF4
M05510_2.00 		Homo sapiens
RGAABVWDCYRGAWN
NWTCYRGHWBVTTCY		 SELEX
Yin et al.(2017)
HSF4_eDBD_Methyl-HT-SELEX 		0.343 0.386
HSFA4A
M06947_2.00 		Arabidopsis thaliana
NNNRGAABBTTCTAGAANN
NNTTCTAGAAVVTTCYNNN		 Dap-seq
OMalley et al.(2016)
HSF21_col_a 		0.332 0.489
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029226.1-P HSF 37 128

Links

Other HSF family TFs
Other Brassica rapa TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g165560 Brassica oleracea Bo2g165560 I 0.594
Bo2g165540 Brassica oleracea Bo2g165540 I 0.531
Bo01835s010 Brassica oleracea Bo01835s010 N 0.511
Bra002882 Brassica rapa Bra002882 I 0.399
Bo4g190160 Brassica oleracea Bo4g190160 I 0.397
Bra016996 Brassica rapa Bra016996 I 0.396
Bra016998 Brassica rapa Bra016998 I 0.396
Bo7g061750 Brassica oleracea Bo7g061750 I 0.391
Bra030021 Brassica rapa Bra030021 I 0.377
Bostr.3359s0057 Boechera stricta Bostr.3359s0057 I 0.377
Bostr.0556s0470 Boechera stricta Bostr.0556s0470 I 0.375
scaffold_601314.1 Arabidopsis lyrata scaffold_601314.1 I 0.370
Bra013406 Brassica rapa Bra013406 I 0.368
Bo1g007320 Brassica oleracea Bo1g007320 I 0.364
Bra013412 Brassica rapa Bra013412 I 0.364
POPTR_0008s13620 Populus trichocarpa POPTR_0008s13620 I 0.363
EuGene.0200010072 Micromonas sp RCC299 EuGene.0200010072 I 0.362
Bostr.26959s0010 Boechera stricta Bostr.26959s0010 I 0.348
Bostr.30275s0431 Boechera stricta Bostr.30275s0431 I 0.346
HSF4 Felis catus ENSFCAG00000014099 I 0.345
Cagra.2848s0007 Capsella grandiflora Cagra.2848s0007 I 0.345
Bra029228 Brassica rapa Bra029228 N 0.345
gene23802-v1.0-hybrid Fragaria vesca gene23802-v1.0-hybrid I 0.344
Bo1g021700 Brassica oleracea Bo1g021700 I 0.344
ENSOARG00000002740 Ovis aries ENSOARG00000002740 I 0.343
HSF4 Oryctolagus cuniculus ENSOCUG00000010001 I 0.343
HSF4 Otolemur garnettii ENSOGAG00000001391 I 0.343
ENSNLEG00000004338 Nomascus leucogenys ENSNLEG00000004338 I 0.343
ENSMPUG00000005418 Mustela putorius furo ENSMPUG00000005418 I 0.343
HSF4 Macaca mulatta ENSMMUG00000005906 I 0.343
ENSBTAP00000004568-D1 Bos grunniens ENSBTAP00000004568-D1 I 0.343
HSF4 Ochotona princeps ENSOPRG00000015074 I 0.343
Hsf4 Mus musculus ENSMUSG00000033249 I 0.343
ENSPANG00000005017 Papio anubis ENSPANG00000005017 I 0.343
Ca_00428 Cicer arietinum Ca_00428 I 0.343
SCLCIDRAFT_1218516 Scleroderma citrinum SCLCIDRAFT_1218516 I 0.343
HSF4 Gorilla gorilla ENSGGOG00000011899 I 0.343
HSF4 Sus scrofa ENSSSCG00000002792 I 0.343
HSF4 Pteropus vampyrus ENSPVAG00000000402 I 0.343
ENSPPYG00000007441 Pongo abelii ENSPPYG00000007441 I 0.343
HSF4 Pan troglodytes ENSPTRG00000034007 I 0.343
ENSSTOG00000027009 Ictidomys tridecemlineatus ENSSTOG00000027009 I 0.343
HSF4 Tursiops truncatus ENSTTRG00000010241 I 0.343
Hsf4 Dipodomys ordii ENSDORG00000015128 I 0.343
HSF4 Dasypus novemcinctus ENSDNOG00000032363 I 0.343
HSF4 Bos taurus ENSBTAG00000003514 I 0.343
ENSCSAG00000003768 Chlorocebus sabaeus ENSCSAG00000003768 I 0.343
HSF4 Equus caballus ENSECAG00000016708 I 0.343
HSF4 Homo sapiens ENSG00000102878 D 0.343
HSF4 Canis familiaris ENSCAFG00000020379 I 0.343
BN946_scf185014.g98 Trametes cinnabarina BN946_scf185014.g98 I 0.343
ENSAMEG00000017238 Ailuropoda melanoleuca ENSAMEG00000017238 I 0.343
Carubv10007333m.g Capsella rubella Carubv10007333m.g I 0.341
Cagra.13025s0005 Capsella grandiflora Cagra.13025s0005 I 0.341
HSF4 Cavia porcellus ENSCPOG00000010834 I 0.341
Gorai.N013300 Gossypium raimondii Gorai.N013300 I 0.341
HSF4 Myotis lucifugus ENSMLUG00000011083 I 0.341
AMSG_03636 Thecamonas trahens AMSG_03636 I 0.341
SapurV1A.0015s0620 Salix purpurea SapurV1A.0015s0620 I 0.341
Eucgr.E02813 Eucalyptus grandis Eucgr.E02813 I 0.340
TCM_011279 Theobroma cacao TCM_011279 I 0.340
HSF4 Loxodonta africana ENSLAFG00000021984 I 0.340
Bra012571 Brassica rapa Bra012571 I 0.338
MTR_8g105780 Medicago truncatula MTR_8g105780 I 0.338
cassava14764.m1 Manihot esculenta cassava14764.m1 I 0.338
Bo7g106320 Brassica oleracea Bo7g106320 I 0.338
evm.TU.supercontig_2.169 Carica papaya evm.TU.supercontig_2.169 I 0.338
Carubv10027643m.g Capsella rubella Carubv10027643m.g I 0.338
Gorai.009G032300 Gossypium raimondii Gorai.009G032300 I 0.336
Bo3g157380 Brassica oleracea Bo3g157380 I 0.336
Lus10022083.g Linum usitatissimum Lus10022083.g I 0.336
Pm005887 Prunus mume Pm005887 I 0.335
MDP0000126826 Malus domestica MDP0000126826 I 0.335
PRUPE_ppa006514mg Prunus persica PRUPE_ppa006514mg I 0.335
HSF4 Microcebus murinus ENSMICG00000007714 I 0.335
Bra004272 Brassica rapa Bra004272 I 0.335
Bo6g106450 Brassica oleracea Bo6g106450 I 0.335
GRMZM2G179802 Zea mays GRMZM2G179802 I 0.335
Hsf4 Rattus norvegicus ENSRNOG00000015253 I 0.334
cassava7697.valid.m1 Manihot esculenta cassava7697.valid.m1 I 0.334
Contig10067.0.g63 Oxytricha trifallax Contig10067.0.g63 I 0.333
Contig10723.0.g13 Oxytricha trifallax Contig10723.0.g13 I 0.333
PAXRUDRAFT_162335 Paxillus rubicundulus PAXRUDRAFT_162335 I 0.333
Ca_08627 Cicer arietinum Ca_08627 I 0.333
VIT_10s0003g01770 Vitis vinifera VIT_10s0003g01770 I 0.333
Bostr.30275s0365 Boechera stricta Bostr.30275s0365 I 0.332
HSFA4A Arabidopsis thaliana AT4G18880 D 0.332
AT-HSFA8 Vitis vinifera VIT_01s0011g05970 I 0.332
Cagra.4306s0004 Capsella grandiflora Cagra.4306s0004 I 0.332
AT-HSFA4A Arabidopsis lyrata fgenesh2_kg.7__2405__AT4G18880.1 I 0.332
HSF4 Procavia capensis ENSPCAG00000013012 I 0.332
fgenesh1_pg.C_scaffold_7000870 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000870 I 0.332
cassava24811.valid.m1 Manihot esculenta cassava24811.valid.m1 I 0.332
Carubv10004953m.g Capsella rubella Carubv10004953m.g I 0.332
Bra013358 Brassica rapa Bra013358 I 0.331
gw1.42.207.1 Physcomitrella patens gw1.42.207.1 I 0.331
Aquca_020_00446 Aquilegia coerulea Aquca_020_00446 I 0.331
estExt_Genewise1.C_310312 Physcomitrella patens estExt_Genewise1.C_310312 I 0.331
mgf006947m Mimulus guttatus mgf006947m I 0.330
Thhalv10025409m.g Eutrema salsugineum Thhalv10025409m.g I 0.330
VIT_12s0028g01410 Vitis vinifera VIT_12s0028g01410 I 0.329
MTR_8g087540 Medicago truncatula MTR_8g087540 I 0.329
Bo1g020010 Brassica oleracea Bo1g020010 I 0.329
POPTR_0011s06820 Populus trichocarpa POPTR_0011s06820 I 0.329
orange1.1g015635m.g Citrus sinensis orange1.1g015635m.g I 0.328
TCM_029630 Theobroma cacao TCM_029630 I 0.328
GLYMA05G29470 Glycine max GLYMA05G29470 I 0.328
Gorai.011G036400 Gossypium raimondii Gorai.011G036400 I 0.328
Lus10007318.g Linum usitatissimum Lus10007318.g I 0.328
PK09831.1 Cannabis sativa PK09831.1 I 0.328
BRADI3G43710 Brachypodium distachyon BRADI3G43710 I 0.327
PHLGIDRAFT_68835 Phlebiopsis gigantea PHLGIDRAFT_68835 I 0.327
FOMPIDRAFT_1100359 Fomitopsis pinicola FOMPIDRAFT_1100359 I 0.327
Solyc06g053960.2 Solanum lycopersicum Solyc06g053960.2 I 0.327
Bo2g056350 Brassica oleracea Bo2g056350 I 0.326
estExt_Genewise1.C_510007 Bigelowiella natans estExt_Genewise1.C_510007 I 0.326
Carubv10014950m.g Capsella rubella Carubv10014950m.g N 0.326
GLYMA08G12630 Glycine max GLYMA08G12630 I 0.326
mgf006143m Mimulus guttatus mgf006143m I 0.325
Lus10015237.g Linum usitatissimum Lus10015237.g I 0.325
LPERR03G28330 Leersia perrieri LPERR03G28330 I 0.325
Pm010169 Prunus mume Pm010169 I 0.325
HSF2 Phaeodactylum tricornutum Phatr3_J55070 N 0.325
GLOTRDRAFT_35422 Gloeophyllum trabeum GLOTRDRAFT_35422 I 0.325
Lus10005420.g Linum usitatissimum Lus10005420.g I 0.325
PRUPE_ppa006534mg Prunus persica PRUPE_ppa006534mg I 0.325
M404DRAFT_154909 Pisolithus tinctorius M404DRAFT_154909 I 0.324
hsf1 Danio rerio ENSDARG00000008818 I 0.324
PISMIDRAFT_106875 Pisolithus microcarpus PISMIDRAFT_106875 I 0.324
Ca_10406 Cicer arietinum Ca_10406 I 0.324
OGLUM02G17550 Oryza glumaepatula OGLUM02G17550 I 0.323
HSFA5 Oryza sativa OS02G0496100 I 0.323
PGSC0003DMG400016270 Solanum tuberosum PGSC0003DMG400016270 I 0.323
OMERI02G17330 Oryza meridionalis OMERI02G17330 I 0.323
ORUFI02G18130 Oryza rufipogon ORUFI02G18130 I 0.323
AMSG_01638 Thecamonas trahens AMSG_01638 I 0.323
ONIVA02G18700 Oryza nivara ONIVA02G18700 I 0.323
LPERR02G13860 Leersia perrieri LPERR02G13860 I 0.323
F775_00937 Aegilops tauschii F775_00937 I 0.323
FIBRA_02011 Fibroporia radiculosa FIBRA_02011 I 0.323
Traes_6AS_1537629B3 Triticum aestivum Traes_6AS_1537629B3 I 0.323
BGIOSGA006438 Oryza indica BGIOSGA006438 I 0.323
hsf1.S Xenopus laevis XB-GENE-997146 I 0.322
hsf1 Xenopus laevis XB-GENE-997145 I 0.322
Eucgr.C00873 Eucalyptus grandis Eucgr.C00873 I 0.322
RO3G_10499 Rhizopus oryzae RO3G_10499 I 0.322
Lus10029269.g Linum usitatissimum Lus10029269.g I 0.322
XP_002942927 Xenopus tropicalis XP_002942927 I 0.322
Lus10006618.g Linum usitatissimum Lus10006618.g I 0.322
chr4.CM0046.500.nc Lotus japonicus chr4.CM0046.500.nc I 0.322
HSF1 Anolis carolinensis ENSACAG00000012604 I 0.322
Gorai.010G240800 Gossypium raimondii Gorai.010G240800 I 0.321
Eucgr.A01948 Eucalyptus grandis Eucgr.A01948 I 0.321
Si019082m.g Setaria italica Si019082m.g I 0.321
Solyc09g082670.2 Solanum lycopersicum Solyc09g082670.2 I 0.321
Cagra.0096s0075 Capsella grandiflora Cagra.0096s0075 I 0.321
PGSC0003DMG400028414 Solanum tuberosum PGSC0003DMG400028414 I 0.321
Carubv10021131m.g Capsella rubella Carubv10021131m.g I 0.321
OPUNC02G15430 Oryza punctata OPUNC02G15430 I 0.321
e_gw.355.83.1 Branchiostoma floridae e_gw.355.83.1 N 0.320
Solyc07g040680.2 Solanum lycopersicum Solyc07g040680.2 I 0.320
TCM_037635 Theobroma cacao TCM_037635 I 0.320
29968.m000635 Ricinus communis 29968.m000635 I 0.320
chr6.CM0118.920.nd Lotus japonicus chr6.CM0118.920.nd I 0.320
SERLA73DRAFT_60481 Serpula lacrymans SERLA73DRAFT_60481 I 0.320
e_gw.355.85.1 Branchiostoma floridae e_gw.355.85.1 N 0.320
GLYMA16G13400 Glycine max GLYMA16G13400 I 0.320
GLYMA13G29760 Glycine max GLYMA13G29760 I 0.320
SapurV1A.0086s0550 Salix purpurea SapurV1A.0086s0550 I 0.320
Solyc02g072000.2 Solanum lycopersicum Solyc02g072000.2 I 0.320
OPUNC03G31000 Oryza punctata OPUNC03G31000 I 0.319
OB01G39790 Oryza brachyantha OB01G39790 I 0.319
ENSLOCG00000007411 Lepisosteus oculatus ENSLOCG00000007411 I 0.319
Eucgr.L01331 Eucalyptus grandis Eucgr.L01331 I 0.319
OB03G40890 Oryza brachyantha OB03G40890 I 0.319
OPUNC01G15930 Oryza punctata OPUNC01G15930 I 0.319
29739.m003565 Ricinus communis 29739.m003565 I 0.319
V565_116890 Rhizoctonia solani V565_116890 I 0.319
CHLREDRAFT_117914 Chlamydomonas reinhardtii CHLREDRAFT_117914 I 0.318
ENSLACG00000013265 Latimeria chalumnae ENSLACG00000013265 I 0.318