estExt_Genewise1Plus.C_91152 (Fragilariopsis cylindrus)
HSF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00447 (HSF_DNA-bind) IPR000232 estExt_Genewise1Plus.C_91152 T242852_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HSFA6B
M06941_2.00 		Arabidopsis thaliana
RGAASNTTCTAGA
TCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_colamp_a 		0.321 0.382
HSFA6B
M06942_2.00 		Arabidopsis thaliana
RGAABNTTCTRGAAN
NTTCYAGAANVTTCY		 Dap-seq
OMalley et al.(2016)
HSFA6B_col 		0.321 0.382
For this family, TFs with SR scores > 0.318 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1Plus.C_91152 HSF 99 194

Links

Other HSF family TFs
Other Fragilariopsis cylindrus TFs

109 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.26.222.1 Fragilariopsis cylindrus gw1.26.222.1 N 0.439
Phatr3_J49596 Phaeodactylum tricornutum Phatr3_J49596 N 0.434
Phatr3_Jdraft1650 Phaeodactylum tricornutum Phatr3_Jdraft1650 N 0.415
Thaps22454 Thalassiosira pseudonana Thaps22454 I 0.414
Phatr3_J44684 Phaeodactylum tricornutum Phatr3_J44684 N 0.407
Phatr3_J49594 Phaeodactylum tricornutum Phatr3_J49594 I 0.403
Phatr3_J49557 Phaeodactylum tricornutum Phatr3_J49557 N 0.388
Phatr3_J49567 Phaeodactylum tricornutum Phatr3_J49567 N 0.386
Phatr3_J43363 Phaeodactylum tricornutum Phatr3_J43363 N 0.379
Phatr3_J48361 Phaeodactylum tricornutum Phatr3_J48361 N 0.377
Phatr3_EG00672 Phaeodactylum tricornutum Phatr3_EG00672 N 0.376
Thaps21513 Thalassiosira pseudonana Thaps21513 N 0.371
Phatr3_J49566 Phaeodactylum tricornutum Phatr3_J49566 N 0.370
Thaps10613 Thalassiosira pseudonana Thaps10613 N 0.364
Phatr3_J48572 Phaeodactylum tricornutum Phatr3_J48572 N 0.360
Phatr3_J49620 Phaeodactylum tricornutum Phatr3_J49620 N 0.359
Phatr3_J48558 Phaeodactylum tricornutum Phatr3_J48558 N 0.359
estExt_fgenesh2_pg.C_40667 Fragilariopsis cylindrus estExt_fgenesh2_pg.C_40667 N 0.354
Thaps22932 Thalassiosira pseudonana Thaps22932 N 0.354
Thaps23801 Thalassiosira pseudonana Thaps23801 N 0.352
e_gw1.21.303.1 Fragilariopsis cylindrus e_gw1.21.303.1 N 0.349
Phatr3_EG00322 Phaeodactylum tricornutum Phatr3_EG00322 N 0.348
HSF1 Phaeodactylum tricornutum Phatr3_J44099 N 0.345
Phatr3_J39786 Phaeodactylum tricornutum Phatr3_J39786 N 0.344
Thaps263978 Thalassiosira pseudonana Thaps263978 N 0.344
Phatr3_EG01933 Phaeodactylum tricornutum Phatr3_EG01933 N 0.344
Phatr3_J48394 Phaeodactylum tricornutum Phatr3_J48394 N 0.343
e_gw1.5.1185.1 Fragilariopsis cylindrus e_gw1.5.1185.1 N 0.341
e_gw1.94.63.1 Fragilariopsis cylindrus e_gw1.94.63.1 N 0.338
e_gw1.2.349.1 Fragilariopsis cylindrus e_gw1.2.349.1 N 0.338
Phatr3_J44917 Phaeodactylum tricornutum Phatr3_J44917 N 0.337
Phatr3_J48667 Phaeodactylum tricornutum Phatr3_J48667 N 0.336
HSF2 Phaeodactylum tricornutum Phatr3_J55070 N 0.336
gw1.2.1206.1 Fragilariopsis cylindrus gw1.2.1206.1 N 0.336
Lus10011185.g Linum usitatissimum Lus10011185.g I 0.335
MTR_1g102860 Medicago truncatula MTR_1g102860 I 0.334
AMTR_s00069p00130920 Amborella trichopoda AMTR_s00069p00130920 I 0.332
Thaps262668 Thalassiosira pseudonana Thaps262668 N 0.332
Pm007815 Prunus mume Pm007815 I 0.331
Thaps6958 Thalassiosira pseudonana Thaps6958 N 0.331
MDP0000613011 Malus domestica MDP0000613011 I 0.331
Phatr3_EG02471 Phaeodactylum tricornutum Phatr3_EG02471 N 0.330
Phatr3_EG02327 Phaeodactylum tricornutum Phatr3_EG02327 N 0.329
e_gw1.2.1757.1 Fragilariopsis cylindrus e_gw1.2.1757.1 N 0.328
GLYMA01G34490 Glycine max GLYMA01G34490 I 0.328
Aquca_084_00048 Aquilegia coerulea Aquca_084_00048 I 0.327
GLYMA20G28870 Glycine max GLYMA20G28870 I 0.327
SapurV1A.0350s0180 Salix purpurea SapurV1A.0350s0180 I 0.326
GLYMA05G28460 Glycine max GLYMA05G28460 I 0.326
AMTR_s00040p00209530 Amborella trichopoda AMTR_s00040p00209530 I 0.326
AMTR_s00009p00264800 Amborella trichopoda AMTR_s00009p00264800 I 0.326
VIT_02s0012g01810 Vitis vinifera VIT_02s0012g01810 I 0.325
POPTR_0008s15740 Populus trichocarpa POPTR_0008s15740 I 0.325
cassava24315.valid.m1 Manihot esculenta cassava24315.valid.m1 I 0.324
Phatr3_J48702 Phaeodactylum tricornutum Phatr3_J48702 N 0.324
MTR_6g043060 Medicago truncatula MTR_6g043060 I 0.324
Solyc08g005170.2 Solanum lycopersicum Solyc08g005170.2 I 0.324
SELMODRAFT_39381 Selaginella moellendorffii SELMODRAFT_39381 I 0.324
SELMODRAFT_39384 Selaginella moellendorffii SELMODRAFT_39384 I 0.324
PGSC0003DMG400017846 Solanum tuberosum PGSC0003DMG400017846 I 0.324
e_gw1.25.66.1 Volvox carteri e_gw1.25.66.1 I 0.323
Pm009237 Prunus mume Pm009237 I 0.323
Thhalv10020829m.g Eutrema salsugineum Thhalv10020829m.g I 0.323
HSF1 Arabidopsis lyrata fgenesh2_kg.7__2533__AT4G17750.1 I 0.323
TCM_020222 Theobroma cacao TCM_020222 I 0.323
PRUPE_ppa1027143mg Prunus persica PRUPE_ppa1027143mg I 0.323
Phatr3_J39785 Phaeodactylum tricornutum Phatr3_J39785 N 0.323
GLYMA10G38930 Glycine max GLYMA10G38930 I 0.322
Gorai.006G224000 Gossypium raimondii Gorai.006G224000 I 0.322
Lus10016634.g Linum usitatissimum Lus10016634.g I 0.322
Bostr.19424s0375 Boechera stricta Bostr.19424s0375 I 0.322
Ca_08536 Cicer arietinum Ca_08536 I 0.322
gw1.21.273.1 Fragilariopsis cylindrus gw1.21.273.1 N 0.322
Gorai.008G225200 Gossypium raimondii Gorai.008G225200 I 0.321
orange1.1g010166m.g Citrus sinensis orange1.1g010166m.g I 0.321
Carubv10013808m.g Capsella rubella Carubv10013808m.g I 0.321
PK05866.1 Cannabis sativa PK05866.1 I 0.321
Gorai.003G183900 Gossypium raimondii Gorai.003G183900 I 0.321
TCM_016563 Theobroma cacao TCM_016563 I 0.321
Bra023800 Brassica rapa Bra023800 I 0.321
Bo5g093470 Brassica oleracea Bo5g093470 I 0.321
Bra033913 Brassica rapa Bra033913 I 0.321
Cucsa.321980 Cucumis sativus Cucsa.321980 I 0.321
Bra040179 Brassica rapa Bra040179 I 0.321
PRUPE_ppa004782mg Prunus persica PRUPE_ppa004782mg I 0.321
Bo1g017810 Brassica oleracea Bo1g017810 I 0.321
HSFA6B Arabidopsis thaliana AT3G22830 D 0.321
30054.m000802 Ricinus communis 30054.m000802 I 0.321
Pm023178 Prunus mume Pm023178 I 0.321
Cla009775 Citrullus lanatus Cla009775 I 0.321
Cla008974 Citrullus lanatus Cla008974 I 0.321
Lus10000312.g Linum usitatissimum Lus10000312.g I 0.320
SapurV1A.0852s0050 Salix purpurea SapurV1A.0852s0050 I 0.320
AT-HSFA6B Arabidopsis lyrata fgenesh2_kg.3__2495__AT3G22830.1 I 0.320
MDP0000319910 Malus domestica MDP0000319910 I 0.320
gene13904-v1.0-hybrid Fragaria vesca gene13904-v1.0-hybrid I 0.320
VIT_10s0597g00050 Vitis vinifera VIT_10s0597g00050 I 0.320
POPTR_0003s09370 Populus trichocarpa POPTR_0003s09370 I 0.320
evm.TU.supercontig_90.16 Carica papaya evm.TU.supercontig_90.16 I 0.320
29844.m003222 Ricinus communis 29844.m003222 I 0.319
HSFA1A Arabidopsis thaliana AT4G17750 I 0.319
e_gw1.27.180.1 Fragilariopsis cylindrus e_gw1.27.180.1 N 0.319
SapurV1A.0058s0140 Salix purpurea SapurV1A.0058s0140 I 0.319
Bo3g081420 Brassica oleracea Bo3g081420 I 0.319
Eucgr.E00253 Eucalyptus grandis Eucgr.E00253 I 0.319
Lus10011065.g Linum usitatissimum Lus10011065.g I 0.319
Bostr.30275s0239 Boechera stricta Bostr.30275s0239 I 0.319
MTR_8g083100 Medicago truncatula MTR_8g083100 I 0.319
POPTR_0001s32810 Populus trichocarpa POPTR_0001s32810 I 0.318