LBD10 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT2G23660 T244875_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes LOB domain protein whose overexpression results in KNOX gene repression. Overexpression also results in plants with hyponastic leaves, downward pointing flowers and reduced apical dominance. May be involved in the transcriptional regulation of the homeobox gene BP (brevipedicellus) during lateral organ differentiation. Acts together with AS2 in proximal-distal symmetry determination.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G23660.1 LOB 5 103
AT2G23660.2 LOB 5 103
AT2G23660.3 LOB 5 103

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD10 Arabidopsis lyrata scaffold_400352.1 I 0.990
Bostr.27895s0126 Boechera stricta Bostr.27895s0126 N 0.949
Cagra.2475s0001 Capsella grandiflora Cagra.2475s0001 I 0.949
Carubv10025704m.g Capsella rubella Carubv10025704m.g I 0.949
Thhalv10000525m.g Eutrema salsugineum Thhalv10000525m.g I 0.919
Bra032153 Brassica rapa Bra032153 I 0.909
Bo4g151770 Brassica oleracea Bo4g151770 I 0.909
VIT_00s1247g00010 Vitis vinifera VIT_00s1247g00010 I 0.768
Pm026450 Prunus mume Pm026450 I 0.768
evm.TU.supercontig_6.423 Carica papaya evm.TU.supercontig_6.423 I 0.768
PRUPE_ppa026393mg Prunus persica PRUPE_ppa026393mg I 0.768
VIT_07s0197g00020 Vitis vinifera VIT_07s0197g00020 I 0.768
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.758
Bostr.0568s0111 Boechera stricta Bostr.0568s0111 I 0.758
Cagra.20099s0001 Capsella grandiflora Cagra.20099s0001 I 0.758
gene24088-v1.0-hybrid Fragaria vesca gene24088-v1.0-hybrid I 0.758
LBD36 Arabidopsis thaliana AT5G66870 I 0.758
TCM_000560 Theobroma cacao TCM_000560 I 0.758
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.758
MDP0000310871 Malus domestica MDP0000310871 I 0.758
Bo7g064360 Brassica oleracea Bo7g064360 I 0.758
Bra012112 Brassica rapa Bra012112 I 0.758
ASL1 Arabidopsis lyrata fgenesh2_kg.8__2729__AT5G66870.1 I 0.758
Carubv10026811m.g Capsella rubella Carubv10026811m.g I 0.758
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.747
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.747
Bo2g167820 Brassica oleracea Bo2g167820 I 0.747
MDP0000562305 Malus domestica MDP0000562305 I 0.747
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.737
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.737
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.737
PGSC0003DMG400010023 Solanum tuberosum PGSC0003DMG400010023 I 0.737
VIT_07s0197g00040 Vitis vinifera VIT_07s0197g00040 I 0.737
Pm010483 Prunus mume Pm010483 I 0.737
Cucsa.250570 Cucumis sativus Cucsa.250570 I 0.737
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.737
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.737
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.737
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.737
Lus10022463.g Linum usitatissimum Lus10022463.g I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.737
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.737
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.737
Lus10016769.g Linum usitatissimum Lus10016769.g I 0.737
gene30401-v1.0-hybrid Fragaria vesca gene30401-v1.0-hybrid I 0.737
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.737
Thhalv10004535m.g Eutrema salsugineum Thhalv10004535m.g I 0.737
Pavir.Ib03943 Panicum virgatum Pavir.Ib03943 I 0.727
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.727
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.727
Cla020438 Citrullus lanatus Cla020438 I 0.727
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.727
Solyc02g090410.2 Solanum lycopersicum Solyc02g090410.2 I 0.727
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.727
Si002599m.g Setaria italica Si002599m.g I 0.727
29676.m001633 Ricinus communis 29676.m001633 I 0.727
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.727
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.727
cassava32691.m1 Manihot esculenta cassava32691.m1 I 0.727
mgf004296m Mimulus guttatus mgf004296m I 0.727
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.727
Ca_20200 Cicer arietinum Ca_20200 I 0.717
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.717
Ca_02125 Cicer arietinum Ca_02125 I 0.717
Gorai.008G073400 Gossypium raimondii Gorai.008G073400 I 0.717
Cla005851 Citrullus lanatus Cla005851 I 0.717
MDP0000777060 Malus domestica MDP0000777060 I 0.717
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.717
Pavir.J09541 Panicum virgatum Pavir.J09541 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
cassava16840.m1 Manihot esculenta cassava16840.m1 I 0.717
MDP0000197526 Malus domestica MDP0000197526 I 0.717
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.717
OB01G48740 Oryza brachyantha OB01G48740 I 0.717
OBART01G39990 Oryza barthii OBART01G39990 I 0.717
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.717
MTR_5g017950 Medicago truncatula MTR_5g017950 I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.717
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.717
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.717
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.717
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.717
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.717
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.717
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.717
F775_20715 Aegilops tauschii F775_20715 I 0.717
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.717
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.717
LBD6 Oryza indica BGIOSGA004955 I 0.717
F775_21760 Aegilops tauschii F775_21760 I 0.717
GLYMA01G39060 Glycine max GLYMA01G39060 I 0.717
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.717
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.717
GLYMA11G06210 Glycine max GLYMA11G06210 I 0.717
GLYMA06G11181 Glycine max GLYMA06G11181 I 0.717
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.717
OB05G24560 Oryza brachyantha OB05G24560 I 0.717
LBD6 Oryza sativa OS01G0889400 I 0.717
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.717
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.717
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.717
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.717
OS05G0417000 Oryza sativa OS05G0417000 I 0.717
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.717
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.717
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.707
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.707
Ca_11161 Cicer arietinum Ca_11161 I 0.707
GLYMA04G11991 Glycine max GLYMA04G11991 I 0.707
Ca_02124 Cicer arietinum Ca_02124 I 0.707
GLYMA05G09950 Glycine max GLYMA05G09950 I 0.707
TCM_024217 Theobroma cacao TCM_024217 I 0.707
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.707
VIT_07s0197g00030 Vitis vinifera VIT_07s0197g00030 I 0.707
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.707
LBD6 Arabidopsis thaliana AT1G65620 D 0.707
Bo2g051420 Brassica oleracea Bo2g051420 I 0.707
Bra039733 Brassica rapa Bra039733 I 0.707
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.707
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.707
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.707
VIT_16s0022g02050 Vitis vinifera VIT_16s0022g02050 I 0.707
GRMZM2G362627 Zea mays GRMZM2G362627 I 0.707
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.707
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.707
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.707
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.707
AS2 Vitis vinifera VIT_00s0340g00090 I 0.707
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.707
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.707
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.707
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.707
29929.m004500 Ricinus communis 29929.m004500 I 0.707
mgf014755m Mimulus guttatus mgf014755m I 0.707
GRMZM2G133806 Zea mays GRMZM2G133806 I 0.707
MDP0000273432 Malus domestica MDP0000273432 I 0.707
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.707
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.707
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.707
Si036905m.g Setaria italica Si036905m.g I 0.707