AGL43 (Arabidopsis thaliana)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 AT5G40220 T252925_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G40220.1 MADS box 14 57

Links

Other MADS box family TFs
Other Arabidopsis thaliana TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL75 Arabidopsis thaliana AT5G41200 I 0.977
scaffold_704060.1 Arabidopsis lyrata scaffold_704060.1 I 0.957
AGL76 Arabidopsis thaliana AT5G40120 I 0.936
AGL81 Arabidopsis thaliana AT5G39750 I 0.936
AGL77 Arabidopsis thaliana AT5G38740 I 0.936
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 0.936
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.935
AGL105 Arabidopsis thaliana AT5G37415 I 0.923
AGL98 Arabidopsis thaliana AT5G39810 I 0.915
Bra025607 Brassica rapa Bra025607 N 0.837
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.818
Bo4g139620 Brassica oleracea Bo4g139620 N 0.818
AGL101 Arabidopsis thaliana AT5G27050 I 0.800
Bra025619 Brassica rapa Bra025619 N 0.795
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.787
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.787
Bo4g139560 Brassica oleracea Bo4g139560 N 0.778
Bo4g139640 Brassica oleracea Bo4g139640 N 0.778
Bo4g139260 Brassica oleracea Bo4g139260 I 0.775
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.761
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.750
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.750
Bra025609 Brassica rapa Bra025609 I 0.745
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.733
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.723
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.717
AT5G26865 Arabidopsis thaliana AT5G26865 N 0.714
Bo00615s090 Brassica oleracea Bo00615s090 I 0.702
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.702