scaffold_704060.1 (Arabidopsis lyrata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 scaffold_704060.1 T256127_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_704060.1 MADS box 21 66

Links

Other MADS box family TFs
Other Arabidopsis lyrata TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL81 Arabidopsis thaliana AT5G39750 I 1.000
Al_scaffold_0007_3741 Arabidopsis lyrata Al_scaffold_0007_3741 I 1.000
AGL77 Arabidopsis thaliana AT5G38740 I 1.000
AGL76 Arabidopsis thaliana AT5G40120 I 1.000
fgenesh2_kg.7__3412__AT5G41200.1 Arabidopsis lyrata fgenesh2_kg.7__3412__AT5G41200.1 I 0.978
AGL75 Arabidopsis thaliana AT5G41200 I 0.977
AGL98 Arabidopsis thaliana AT5G39810 I 0.957
AGL43 Arabidopsis thaliana AT5G40220 I 0.957
AGL105 Arabidopsis thaliana AT5G37415 I 0.923
Bra025607 Brassica rapa Bra025607 N 0.837
Bostr.10058s0014 Boechera stricta Bostr.10058s0014 I 0.830
Bostr.3751s0043 Boechera stricta Bostr.3751s0043 I 0.830
Bostr.3751s0031 Boechera stricta Bostr.3751s0031 I 0.826
Bo4g139620 Brassica oleracea Bo4g139620 N 0.818
Bostr.3751s0030 Boechera stricta Bostr.3751s0030 I 0.792
Bostr.3751s0039 Boechera stricta Bostr.3751s0039 I 0.792
Bra025609 Brassica rapa Bra025609 I 0.787
Thhalv10028282m.g Eutrema salsugineum Thhalv10028282m.g I 0.783
Bo4g139640 Brassica oleracea Bo4g139640 N 0.783
Bo4g139560 Brassica oleracea Bo4g139560 N 0.783
Carubv10006654m.g Capsella rubella Carubv10006654m.g I 0.783
Bo4g139260 Brassica oleracea Bo4g139260 I 0.775
Bostr.0568s0255 Boechera stricta Bostr.0568s0255 I 0.761
Bra025619 Brassica rapa Bra025619 N 0.761
Bo00615s090 Brassica oleracea Bo00615s090 I 0.761
fgenesh2_kg.8__2584__AT5G65330.1 Arabidopsis lyrata fgenesh2_kg.8__2584__AT5G65330.1 I 0.761
Carubv10007591m.g Capsella rubella Carubv10007591m.g I 0.745
Bra031864 Brassica rapa Bra031864 I 0.739
AGL51 Arabidopsis thaliana AT4G02235 I 0.739
Thhalv10028184m.g Eutrema salsugineum Thhalv10028184m.g I 0.739
AGL78 Arabidopsis thaliana AT5G65330 D 0.729
Bostr.3751s0025 Boechera stricta Bostr.3751s0025 I 0.729
Thhalv10005313m.g Eutrema salsugineum Thhalv10005313m.g I 0.723
fgenesh2_kg.6__2748__AT5G27944.1 Arabidopsis lyrata fgenesh2_kg.6__2748__AT5G27944.1 N 0.717
AGL89 Arabidopsis thaliana AT5G27580 N 0.717
scaffold_602835.1 Arabidopsis lyrata scaffold_602835.1 N 0.717
Carubv10015354m.g Capsella rubella Carubv10015354m.g I 0.702