GLYMA13G33031 (Glycine max)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 GLYMA13G33031 T254203_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA13G33031.1 MADS box 40 87

Links

Other MADS box family TFs
Other Glycine max TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.958
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.833
mgf015964m Mimulus guttatus mgf015964m I 0.812
Ca_01491 Cicer arietinum Ca_01491 I 0.812
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.792
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.792
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.792
TCM_034501 Theobroma cacao TCM_034501 I 0.792
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.792
29838.m001690 Ricinus communis 29838.m001690 I 0.792
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.792
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.792
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.792
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.792
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.792
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.771
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.771
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.771
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.771
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.771
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.771
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.771
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.771
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.771
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.771
TCM_007378 Theobroma cacao TCM_007378 I 0.771
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.771
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.771
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.771
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.771
Pm022002 Prunus mume Pm022002 I 0.771
Pm002166 Prunus mume Pm002166 I 0.771
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.771
PK28167.1 Cannabis sativa PK28167.1 I 0.771
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.771
MDP0000209705 Malus domestica MDP0000209705 I 0.771
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.771
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.771
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.771
Bra030228 Brassica rapa Bra030228 I 0.750
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.750
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
PK11571.1 Cannabis sativa PK11571.1 I 0.750
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.750
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.750
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.750
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.750
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.750
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.750
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.750
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.750
Cla014322 Citrullus lanatus Cla014322 I 0.750
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.750
SVP Arabidopsis thaliana AT2G22540 D 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.750
Bo4g149800 Brassica oleracea Bo4g149800 I 0.750
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.750
MDP0000233948 Malus domestica MDP0000233948 I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.750
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.750
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.750
GRMZM2G320549 Zea mays GRMZM2G320549 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.750
ENSMICG00000005703 Microcebus murinus ENSMICG00000005703 I 0.737
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.729
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.729
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.729
chr5.CM0953.150.nc Lotus japonicus chr5.CM0953.150.nc I 0.729
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.729
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.729
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.729
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.729
Bra038511 Brassica rapa Bra038511 I 0.729
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.729
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.729
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.729
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.729
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.729
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.729
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.729
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.729
Cla013108 Citrullus lanatus Cla013108 N 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
SVP Vitis vinifera VIT_00s0313g00070 I 0.729
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.729
Ca_21060 Cicer arietinum Ca_21060 I 0.729
TRIUR3_30872 Triticum urartu TRIUR3_30872 I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
BRADI2G59120 Brachypodium distachyon BRADI2G59120 I 0.729
Bo8g101000 Brassica oleracea Bo8g101000 I 0.729
Sb03g006210 Sorghum bicolor Sb03g006210 I 0.729
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.729
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.729
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.729
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.729
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.729
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.729
TRIUR3_30073 Triticum urartu TRIUR3_30073 I 0.729
TCM_000992 Theobroma cacao TCM_000992 I 0.729
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.729
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.729
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
MDP0000228942 Malus domestica MDP0000228942 I 0.708
PK19764.1 Cannabis sativa PK19764.1 I 0.708
Pavir.J02739 Panicum virgatum Pavir.J02739 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.708
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I 0.708
LPERR02G00370 Leersia perrieri LPERR02G00370 I 0.708
LPERR03G01640 Leersia perrieri LPERR03G01640 I 0.708
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I 0.708
GRMZM2G171650 Zea mays GRMZM2G171650 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
MLOC_12290 Hordeum vulgare MLOC_12290 I 0.708
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.708
OBART02G00360 Oryza barthii OBART02G00360 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
AGL71 Arabidopsis thaliana AT5G51870 I 0.708
BGIOSGA007333 Oryza indica BGIOSGA007333 I 0.708
AGL15 Arabidopsis thaliana AT5G13790 D 0.708
AGL24 Arabidopsis thaliana AT4G24540 I 0.708
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.708
BGIOSGA007336 Oryza indica BGIOSGA007336 I 0.708
BGIOSGA026939 Oryza indica BGIOSGA026939 I 0.708
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.708
F775_43625 Aegilops tauschii F775_43625 I 0.708
Bra019221 Brassica rapa Bra019221 I 0.708
Bo7g109590 Brassica oleracea Bo7g109590 I 0.708
OGLUM02G00350 Oryza glumaepatula OGLUM02G00350 I 0.708
OGLUM08G16360 Oryza glumaepatula OGLUM08G16360 I 0.708
Si019985m.g Setaria italica Si019985m.g I 0.708
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I 0.708
Si004582m.g Setaria italica Si004582m.g I 0.708
Sb04g000500 Sorghum bicolor Sb04g000500 I 0.708
Sb03g044170 Sorghum bicolor Sb03g044170 I 0.708
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.708
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I 0.708
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.708
Ca_12416 Cicer arietinum Ca_12416 I 0.708
TRIUR3_19056 Triticum urartu TRIUR3_19056 I 0.708
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I 0.708
OS02G0104100 Oryza sativa OS02G0104100 I 0.708
OMERI08G12880 Oryza meridionalis OMERI08G12880 I 0.708
OMERI02G09250 Oryza meridionalis OMERI02G09250 I 0.708
OLONG_011763 Oryza longistaminata OLONG_011763 I 0.708
OLONG_001786 Oryza longistaminata OLONG_001786 I 0.708
ONIVA02G00370 Oryza nivara ONIVA02G00370 I 0.708
ONIVA08G16700 Oryza nivara ONIVA08G16700 I 0.708
ORUFI02G00390 Oryza rufipogon ORUFI02G00390 I 0.708
ORGLA02G0003200 Oryza glaberrima ORGLA02G0003200 I 0.708
OPUNC08G13690 Oryza punctata OPUNC08G13690 I 0.708
OPUNC02G00040 Oryza punctata OPUNC02G00040 I 0.708
e_gw.643.15.1 Branchiostoma floridae e_gw.643.15.1 I 0.700