Cucsa.331840 (Cucumis sativus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cucsa.331840 T257293_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.771 0.771
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.771 0.771
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.771 0.771
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.729 0.729
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.729 0.729
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.331840.1 MADS box 108 155
Cucsa.331840.2 MADS box 108 155
Cucsa.331840.3 MADS box 108 155

Links

Other MADS box family TFs
Other Cucumis sativus TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.896
mgf015964m Mimulus guttatus mgf015964m I 0.896
TCM_007378 Theobroma cacao TCM_007378 I 0.875
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.875
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.875
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.854
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.854
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.854
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.854
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.854
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.854
Cla013108 Citrullus lanatus Cla013108 N 0.854
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.854
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.854
29838.m001690 Ricinus communis 29838.m001690 I 0.854
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.854
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.854
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.833
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.833
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.833
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.833
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.833
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.833
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.833
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.833
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.833
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.833
MDP0000209705 Malus domestica MDP0000209705 I 0.812
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.812
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.812
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.812
MTR_4g093970 Medicago truncatula MTR_4g093970 I 0.812
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.812
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.812
Pm002166 Prunus mume Pm002166 I 0.812
Pm022002 Prunus mume Pm022002 I 0.812
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.812
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.812
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.812
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.812
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.812
PK28167.1 Cannabis sativa PK28167.1 I 0.812
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.812
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.812
PK11571.1 Cannabis sativa PK11571.1 I 0.812
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.812
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.812
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.812
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.812
Cla014322 Citrullus lanatus Cla014322 I 0.812
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.812
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.792
MDP0000233948 Malus domestica MDP0000233948 I 0.792
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.792
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.792
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.792
TCM_034501 Theobroma cacao TCM_034501 I 0.792
Si007641m.g Setaria italica Si007641m.g I 0.792
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.792
Bra030228 Brassica rapa Bra030228 I 0.792
Bra019221 Brassica rapa Bra019221 I 0.792
Bo4g149800 Brassica oleracea Bo4g149800 I 0.792
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.792
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.792
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.792
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.792
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.792
Bo7g109590 Brassica oleracea Bo7g109590 I 0.792
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.792
AGL24 Arabidopsis thaliana AT4G24540 I 0.792
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.792
SVP Arabidopsis thaliana AT2G22540 D 0.792
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.780
Pavir.Db01833 Panicum virgatum Pavir.Db01833 I 0.771
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.771
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.771
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.771
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.771
Bra038511 Brassica rapa Bra038511 I 0.771
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.771
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.771
Bo8g101000 Brassica oleracea Bo8g101000 I 0.771
SVP Vitis vinifera VIT_00s0313g00070 I 0.771
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.771
TCM_000992 Theobroma cacao TCM_000992 I 0.771
Ca_21060 Cicer arietinum Ca_21060 I 0.771
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.771
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.771
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.771
mgf023192m Mimulus guttatus mgf023192m I 0.771
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.771
OB11G21480 Oryza brachyantha OB11G21480 I 0.771
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.771
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.771
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.771
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.771
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.771
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.771
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.771
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.771
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.771
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.771
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.771
Ca_01491 Cicer arietinum Ca_01491 I 0.750
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.750
mgf025830m Mimulus guttatus mgf025830m I 0.750
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
Ca_12416 Cicer arietinum Ca_12416 I 0.750
Sb10g007380 Sorghum bicolor Sb10g007380 I 0.750
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.750
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.750
OBART03G06320 Oryza barthii OBART03G06320 I 0.750
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.750
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.750
OS03G0186600 Oryza sativa OS03G0186600 I 0.750
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.750
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.750
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.750
Bra013812 Brassica rapa Bra013812 I 0.750
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.750
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.750
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.750
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.750
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.750
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.750
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.750
Si037358m.g Setaria italica Si037358m.g I 0.750
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.729
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.729
MAD55_ORYSJ Oryza sativa MAD55_ORYSJ D 0.729
GRMZM5G814279 Zea mays GRMZM5G814279 I 0.729
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.729
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.729
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.729
F775_26069 Aegilops tauschii F775_26069 I 0.729
BRADI1G45807 Brachypodium distachyon BRADI1G45807 I 0.729
PK20651.1 Cannabis sativa PK20651.1 I 0.729
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.729
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.729
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.729
Q4U0F1_WHEAT Triticum aestivum Q4U0F1_WHEAT D 0.729
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.729
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.729
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.729
ORGLA06G0069900 Oryza glaberrima ORGLA06G0069900 I 0.729
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.729
OPUNC12G11630 Oryza punctata OPUNC12G11630 I 0.729
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.729
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.729
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.729
Cla022499 Citrullus lanatus Cla022499 I 0.729
OS06G0217300 Oryza sativa OS06G0217300 I 0.729
OPUNC06G07080 Oryza punctata OPUNC06G07080 I 0.729
BGIOSGA021662 Oryza indica BGIOSGA021662 I 0.729
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.729
Si017524m.g Setaria italica Si017524m.g I 0.729
OMERI06G08590 Oryza meridionalis OMERI06G08590 I 0.729
TRIUR3_03219 Triticum urartu TRIUR3_03219 I 0.729
OB06G16920 Oryza brachyantha OB06G16920 I 0.729
Traes_2DL_6A10DD109 Triticum aestivum Traes_2DL_6A10DD109 I 0.723
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.723
Lus10034662.g Linum usitatissimum Lus10034662.g I 0.708
gene04228-v1.0-hybrid Fragaria vesca gene04228-v1.0-hybrid I 0.708
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.708
Lus10017871.g Linum usitatissimum Lus10017871.g I 0.708
Pavir.Db00414 Panicum virgatum Pavir.Db00414 I 0.708
gene13356-v1.0-hybrid Fragaria vesca gene13356-v1.0-hybrid I 0.708
Traes_7AS_376CD50EA Triticum aestivum Traes_7AS_376CD50EA I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.708
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.708
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_449720 Selaginella moellendorffii SELMODRAFT_449720 N 0.708
Traes_5DS_3EBE121C7 Triticum aestivum Traes_5DS_3EBE121C7 I 0.708
Traes_5AS_029A65B0A Triticum aestivum Traes_5AS_029A65B0A I 0.708
SELMODRAFT_449721 Selaginella moellendorffii SELMODRAFT_449721 N 0.708
POPTR_0004s11430 Populus trichocarpa POPTR_0004s11430 I 0.708
MLOC_4407 Hordeum vulgare MLOC_4407 I 0.708
Bo2g160980 Brassica oleracea Bo2g160980 I 0.708
AGL71 Arabidopsis thaliana AT5G51870 I 0.708
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I 0.708
Bra029365 Brassica rapa Bra029365 I 0.708
BRADI1G32210 Brachypodium distachyon BRADI1G32210 I 0.708
GLYMA17G08890 Glycine max GLYMA17G08890 I 0.708
F775_25533 Aegilops tauschii F775_25533 I 0.708
BRADI4G06867 Brachypodium distachyon BRADI4G06867 I 0.708
Traes_7BS_DC9822CEF Triticum aestivum Traes_7BS_DC9822CEF I 0.708
Traes_7DS_05F0F0B64 Triticum aestivum Traes_7DS_05F0F0B64 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
cassava39138.m1 Manihot esculenta cassava39138.m1 I 0.708
Q9ATE2_PETHY Petunia x hybrida Q9ATE2_PETHY D 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.708
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
Q38742_ANTMA Antirrhinum majus Q38742_ANTMA D 0.708
squamosa Antirrhinum majus CAA45228.1 D 0.708
TRIUR3_09267 Triticum urartu TRIUR3_09267 I 0.708
Traes_7DS_D9008CC09 Triticum aestivum Traes_7DS_D9008CC09 I 0.708
Traes_7DS_59CBF5647 Triticum aestivum Traes_7DS_59CBF5647 I 0.708
TRIUR3_17292 Triticum urartu TRIUR3_17292 I 0.708
Cla010047 Citrullus lanatus Cla010047 I 0.708
Pm015397 Prunus mume Pm015397 I 0.708
Pm004420 Prunus mume Pm004420 I 0.708
Pm004416 Prunus mume Pm004416 I 0.708
Eucgr.K02547 Eucalyptus grandis Eucgr.K02547 I 0.708