MTR_4g093970 (Medicago truncatula)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 MTR_4g093970 T254782_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
Q9ATE2_PETHY
M11007_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP29_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES90624 MADS box 36 83

Links

Other MADS box family TFs
Other Medicago truncatula TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G07260 Glycine max GLYMA08G07260 I 0.979
GLYMA07G30040 Glycine max GLYMA07G30040 I 0.979
chr4.CM0100.30.nc Lotus japonicus chr4.CM0100.30.nc I 0.958
GLYMA13G33051 Glycine max GLYMA13G33051 I 0.896
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.896
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.854
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.854
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.854
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.854
mgf015964m Mimulus guttatus mgf015964m I 0.854
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.854
29838.m001690 Ricinus communis 29838.m001690 I 0.854
Pm022002 Prunus mume Pm022002 I 0.833
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.833
TCM_007378 Theobroma cacao TCM_007378 I 0.833
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.833
PK11571.1 Cannabis sativa PK11571.1 I 0.812
Cucsa.331840 Cucumis sativus Cucsa.331840 I 0.812
Pm002166 Prunus mume Pm002166 I 0.812
POPTR_0017s07170 Populus trichocarpa POPTR_0017s07170 I 0.812
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.812
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.812
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.812
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.812
VIT_00s0729g00010 Vitis vinifera VIT_00s0729g00010 I 0.812
VIT_03s0017g00440 Vitis vinifera VIT_03s0017g00440 I 0.792
POPTR_0007s03310 Populus trichocarpa POPTR_0007s03310 I 0.792
VIT_03s0017g00450 Vitis vinifera VIT_03s0017g00450 I 0.792
VIT_03s0167g00100 Vitis vinifera VIT_03s0167g00100 I 0.792
VIT_15s0024g02000 Vitis vinifera VIT_15s0024g02000 I 0.792
Cla014322 Citrullus lanatus Cla014322 I 0.792
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.792
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.792
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.792
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.792
MDP0000209705 Malus domestica MDP0000209705 I 0.792
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.792
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.792
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.792
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.792
PK28167.1 Cannabis sativa PK28167.1 I 0.771
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.771
MDP0000233948 Malus domestica MDP0000233948 I 0.771
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.771
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.771
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.771
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.771
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.771
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.771
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.771
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.771
TCM_034501 Theobroma cacao TCM_034501 I 0.771
VIT_15s0024g01860 Vitis vinifera VIT_15s0024g01860 I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.771
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.771
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.771
Bra030228 Brassica rapa Bra030228 I 0.771
Bra019221 Brassica rapa Bra019221 I 0.771
AGL24 Arabidopsis thaliana AT4G24540 I 0.771
Bo4g149800 Brassica oleracea Bo4g149800 I 0.771
Bo7g109590 Brassica oleracea Bo7g109590 I 0.771
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.771
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.771
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.771
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.750
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.750
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.750
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.750
Cla013108 Citrullus lanatus Cla013108 N 0.750
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.750
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.750
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.750
Cucsa.190400 Cucumis sativus Cucsa.190400 N 0.750
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.750
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.750
Bra038511 Brassica rapa Bra038511 I 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.750
PK20651.1 Cannabis sativa PK20651.1 I 0.750
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.750
SVP Arabidopsis thaliana AT2G22540 D 0.750
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.750
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.750
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
TCM_000992 Theobroma cacao TCM_000992 I 0.750
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
gene29503-v1.0-hybrid Fragaria vesca gene29503-v1.0-hybrid I 0.729
Bra013812 Brassica rapa Bra013812 I 0.729
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
mgf023192m Mimulus guttatus mgf023192m I 0.729
PGSC0003DMG400023729 Solanum tuberosum PGSC0003DMG400023729 I 0.729
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.729
Bo1g039080 Brassica oleracea Bo1g039080 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.729
Cla022499 Citrullus lanatus Cla022499 I 0.729
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.729
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.729
Thhalv10004826m.g Eutrema salsugineum Thhalv10004826m.g I 0.708
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.708
Bo9g014270 Brassica oleracea Bo9g014270 I 0.708
Bra013028 Brassica rapa Bra013028 I 0.708
chr6.CM0055.180.nc Lotus japonicus chr6.CM0055.180.nc I 0.708
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.708
Thhalv10005641m.g Eutrema salsugineum Thhalv10005641m.g I 0.708
SapurV1A.0027s0860 Salix purpurea SapurV1A.0027s0860 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
gene04228-v1.0-hybrid Fragaria vesca gene04228-v1.0-hybrid I 0.708
Bo2g161560 Brassica oleracea Bo2g161560 I 0.708
Pavir.Da01333 Panicum virgatum Pavir.Da01333 I 0.708
Bo7g097810 Brassica oleracea Bo7g097810 I 0.708
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.708
Pavir.Db00414 Panicum virgatum Pavir.Db00414 I 0.708
Bo2g149440 Brassica oleracea Bo2g149440 I 0.708
Bostr.0556s0620 Boechera stricta Bostr.0556s0620 I 0.708
OBART03G06320 Oryza barthii OBART03G06320 I 0.708
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.708
Solyc10g080030.1 Solanum lycopersicum Solyc10g080030.1 I 0.708
PRUPE_ppa010249mg Prunus persica PRUPE_ppa010249mg I 0.708
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.708
GLYMA15G06470 Glycine max GLYMA15G06470 I 0.708
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.708
AGL79 Arabidopsis lyrata Al_scaffold_0005_914 I 0.708
Solyc02g089210.2 Solanum lycopersicum Solyc02g089210.2 I 0.708
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.708
SELMODRAFT_449545 Selaginella moellendorffii SELMODRAFT_449545 I 0.708
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.708
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.708
SELMODRAFT_449594 Selaginella moellendorffii SELMODRAFT_449594 I 0.708
SELMODRAFT_450804 Selaginella moellendorffii SELMODRAFT_450804 I 0.708
Si037358m.g Setaria italica Si037358m.g I 0.708
SELMODRAFT_450837 Selaginella moellendorffii SELMODRAFT_450837 I 0.708
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.708
Pm015397 Prunus mume Pm015397 I 0.708
Bra020742 Brassica rapa Bra020742 I 0.708
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.708
Carubv10018408m.g Capsella rubella Carubv10018408m.g I 0.708
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.708
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.708
OS03G0186600 Oryza sativa OS03G0186600 I 0.708
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.708
Cagra.2834s0001 Capsella grandiflora Cagra.2834s0001 I 0.708
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.708
GLYMA13G32810 Glycine max GLYMA13G32810 I 0.708
Q9ATE2_PETHY Petunia x hybrida Q9ATE2_PETHY D 0.708
GLYMA13G33031 Glycine max GLYMA13G33031 I 0.708
AGL15 Populus trichocarpa POPTR_0009s06060 I 0.708
e_gw1.55.13.1 Physcomitrella patens e_gw1.55.13.1 I 0.708
fgenesh1_pg.scaffold_118000119 Physcomitrella patens fgenesh1_pg.scaffold_118000119 I 0.708
estExt_fgenesh1_kg.C_260002 Physcomitrella patens estExt_fgenesh1_kg.C_260002 I 0.708
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.702