CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GLYMA08G07260
(
Glycine max
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00319 (SRF-TF)
IPR002100
GLYMA08G07260
T254139_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.771
0.771
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.771
0.771
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.771
0.771
Q9ATE2_PETHY
M11007_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP29_01
0.729
0.729
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.708
0.708
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.708
0.708
squamosa
M02697_2.00
Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK
SELEX
Mathelier et al.(2014)
MA0082.1
0.708
0.708
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.708
0.708
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.708
0.708
Q38742_ANTMA
M11000_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$SQUA_01
0.708
0.708
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GLYMA08G07260.3
MADS box
10
57
KIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEY
Links
Other
MADS box
family TFs
Other
Glycine max
TFs
234 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GLYMA07G30040
Glycine max
GLYMA07G30040
I
1.000
chr4.CM0100.30.nc
Lotus japonicus
chr4.CM0100.30.nc
I
0.979
MTR_4g093970
Medicago truncatula
MTR_4g093970
I
0.979
GLYMA13G33051
Glycine max
GLYMA13G33051
I
0.917
GLYMA15G06302
Glycine max
GLYMA15G06302
I
0.917
mgf015964m
Mimulus guttatus
mgf015964m
I
0.875
PGSC0003DMG400033570
Solanum tuberosum
PGSC0003DMG400033570
I
0.875
Solyc01g105800.2
Solanum lycopersicum
Solyc01g105800.2
I
0.875
VIT_03s0017g00360
Vitis vinifera
VIT_03s0017g00360
I
0.854
PRUPE_ppa022274mg
Prunus persica
PRUPE_ppa022274mg
I
0.854
29838.m001690
Ricinus communis
29838.m001690
I
0.854
Pm002166
Prunus mume
Pm002166
I
0.833
Cucsa.331840
Cucumis sativus
Cucsa.331840
I
0.833
Pm022002
Prunus mume
Pm022002
I
0.833
TCM_007378
Theobroma cacao
TCM_007378
I
0.833
VIT_00s0729g00010
Vitis vinifera
VIT_00s0729g00010
I
0.833
cassava1567.valid.m1
Manihot esculenta
cassava1567.valid.m1
I
0.833
SapurV1A.0187s0010
Salix purpurea
SapurV1A.0187s0010
I
0.833
POPTR_0007s03290
Populus trichocarpa
POPTR_0007s03290
I
0.833
PRUPE_ppa011063mg
Prunus persica
PRUPE_ppa011063mg
I
0.833
PK11571.1
Cannabis sativa
PK11571.1
I
0.833
POPTR_0007s03270
Populus trichocarpa
POPTR_0007s03270
I
0.833
VIT_15s0107g00120
Vitis vinifera
VIT_15s0107g00120
I
0.833
evm.TU.supercontig_55.31
Carica papaya
evm.TU.supercontig_55.31
I
0.812
VIT_03s0017g00450
Vitis vinifera
VIT_03s0017g00450
I
0.812
VIT_15s0024g02000
Vitis vinifera
VIT_15s0024g02000
I
0.812
VIT_03s0017g00440
Vitis vinifera
VIT_03s0017g00440
I
0.812
Cla014322
Citrullus lanatus
Cla014322
I
0.812
Cucsa.104010
Cucumis sativus
Cucsa.104010
I
0.812
Gorai.013G055700
Gossypium raimondii
Gorai.013G055700
I
0.812
Gorai.008G017200
Gossypium raimondii
Gorai.008G017200
I
0.812
Gorai.005G225500
Gossypium raimondii
Gorai.005G225500
I
0.812
MDP0000209705
Malus domestica
MDP0000209705
I
0.812
VIT_03s0167g00100
Vitis vinifera
VIT_03s0167g00100
I
0.812
cassava31070.valid.m1
Manihot esculenta
cassava31070.valid.m1
I
0.812
cassava31071.valid.m1
Manihot esculenta
cassava31071.valid.m1
I
0.812
PGSC0003DMG400009363
Solanum tuberosum
PGSC0003DMG400009363
I
0.792
POPTR_0017s07170
Populus trichocarpa
POPTR_0017s07170
I
0.792
GSMUA_Achr9G15180_001
Musa acuminata
GSMUA_Achr9G15180_001
I
0.792
GSMUA_Achr3G06800_001
Musa acuminata
GSMUA_Achr3G06800_001
I
0.792
orange1.1g034384m.g
Citrus sinensis
orange1.1g034384m.g
I
0.792
gene20808-v1.0-hybrid
Fragaria vesca
gene20808-v1.0-hybrid
I
0.792
TCM_034501
Theobroma cacao
TCM_034501
I
0.792
MDP0000233948
Malus domestica
MDP0000233948
I
0.792
GLYMA01G02880
Glycine max
GLYMA01G02880
I
0.792
GLYMA11G16105
Glycine max
GLYMA11G16105
I
0.792
Thhalv10026757m.g
Eutrema salsugineum
Thhalv10026757m.g
I
0.792
Bo7g109590
Brassica oleracea
Bo7g109590
I
0.792
PK28167.1
Cannabis sativa
PK28167.1
I
0.792
AGL24
Arabidopsis thaliana
AT4G24540
I
0.792
LjT38P01.180.nd
Lotus japonicus
LjT38P01.180.nd
I
0.792
Ciclev10026457m.g
Citrus clementina
Ciclev10026457m.g
I
0.792
Ciclev10029776m.g
Citrus clementina
Ciclev10029776m.g
I
0.792
cassava42879.valid.m1
Manihot esculenta
cassava42879.valid.m1
I
0.792
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.792
Bra019221
Brassica rapa
Bra019221
I
0.792
AGL24
Arabidopsis lyrata
fgenesh2_kg.7__1822__AT4G24540.1
I
0.792
Bra030228
Brassica rapa
Bra030228
I
0.792
evm.TU.supercontig_21.11
Carica papaya
evm.TU.supercontig_21.11
I
0.792
VIT_15s0024g01860
Vitis vinifera
VIT_15s0024g01860
I
0.792
POPTR_0007s03310
Populus trichocarpa
POPTR_0007s03310
I
0.771
PGSC0003DMG400016203
Solanum tuberosum
PGSC0003DMG400016203
I
0.771
AGL24
Vitis vinifera
VIT_18s0001g07460
I
0.771
Carubv10005653m.g
Capsella rubella
Carubv10005653m.g
I
0.771
Ca_21060
Cicer arietinum
Ca_21060
I
0.771
POPTR_0002s10570
Populus trichocarpa
POPTR_0002s10570
I
0.771
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.771
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.771
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.771
Solyc11g010570.1
Solanum lycopersicum
Solyc11g010570.1
I
0.771
Eucgr.I00556
Eucalyptus grandis
Eucgr.I00556
I
0.771
Aquca_015_00177
Aquilegia coerulea
Aquca_015_00177
I
0.771
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.771
Bostr.7867s0261
Boechera stricta
Bostr.7867s0261
I
0.771
Gorai.002G142700
Gossypium raimondii
Gorai.002G142700
I
0.771
Cagra.2171s0007
Capsella grandiflora
Cagra.2171s0007
I
0.771
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.771
PK20651.1
Cannabis sativa
PK20651.1
I
0.771
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.771
Bra038511
Brassica rapa
Bra038511
I
0.771
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.771
GLYMA02G04710
Glycine max
GLYMA02G04710
I
0.771
GLYMA04G10015
Glycine max
GLYMA04G10015
I
0.771
GLYMA12G17721
Glycine max
GLYMA12G17721
I
0.771
SapurV1A.0004s1140
Salix purpurea
SapurV1A.0004s1140
I
0.771
GLYMA06G10020
Glycine max
GLYMA06G10020
I
0.771
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.771
SapurV1A.0463s0130
Salix purpurea
SapurV1A.0463s0130
I
0.771
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.771
SVP
Arabidopsis thaliana
AT2G22540
D
0.771
Gorai.010G035000
Gossypium raimondii
Gorai.010G035000
I
0.771
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.771
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.771
Cucsa.160640
Cucumis sativus
Cucsa.160640
I
0.750
Cucsa.190400
Cucumis sativus
Cucsa.190400
N
0.750
orange1.1g040972m.g
Citrus sinensis
orange1.1g040972m.g
I
0.750
mgf023192m
Mimulus guttatus
mgf023192m
I
0.750
Ca_12416
Cicer arietinum
Ca_12416
I
0.750
GSMUA_Achr10G19290_001
Musa acuminata
GSMUA_Achr10G19290_001
I
0.750
Bra013812
Brassica rapa
Bra013812
I
0.750
mgf025830m
Mimulus guttatus
mgf025830m
I
0.750
Aquca_009_00337
Aquilegia coerulea
Aquca_009_00337
I
0.750
PGSC0003DMG400023729
Solanum tuberosum
PGSC0003DMG400023729
I
0.750
Cla013108
Citrullus lanatus
Cla013108
N
0.750
Ca_01491
Cicer arietinum
Ca_01491
I
0.750
Eucgr.F00420
Eucalyptus grandis
Eucgr.F00420
I
0.750
orange1.1g027190m.g
Citrus sinensis
orange1.1g027190m.g
I
0.750
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.750
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.750
Bo1g039080
Brassica oleracea
Bo1g039080
I
0.750
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.750
AMTR_s00053p00228660
Amborella trichopoda
AMTR_s00053p00228660
I
0.750
gene29503-v1.0-hybrid
Fragaria vesca
gene29503-v1.0-hybrid
I
0.750
TCM_000992
Theobroma cacao
TCM_000992
I
0.750
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.732
PRUPE_ppa010249mg
Prunus persica
PRUPE_ppa010249mg
I
0.729
Thhalv10004826m.g
Eutrema salsugineum
Thhalv10004826m.g
I
0.729
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.729
MDP0000135652
Malus domestica
MDP0000135652
I
0.729
Bra020742
Brassica rapa
Bra020742
I
0.729
Q9ATE2_PETHY
Petunia x hybrida
Q9ATE2_PETHY
D
0.729
Cagra.2834s0001
Capsella grandiflora
Cagra.2834s0001
I
0.729
gene04228-v1.0-hybrid
Fragaria vesca
gene04228-v1.0-hybrid
I
0.729
Bo9g014270
Brassica oleracea
Bo9g014270
I
0.729
Bo7g097810
Brassica oleracea
Bo7g097810
I
0.729
Eucgr.F02146
Eucalyptus grandis
Eucgr.F02146
I
0.729
Gorai.008G092300
Gossypium raimondii
Gorai.008G092300
I
0.729
Thhalv10005641m.g
Eutrema salsugineum
Thhalv10005641m.g
I
0.729
Carubv10018408m.g
Capsella rubella
Carubv10018408m.g
I
0.729
chr6.CM0055.180.nc
Lotus japonicus
chr6.CM0055.180.nc
I
0.729
Bra013028
Brassica rapa
Bra013028
I
0.729
AGL15
Populus trichocarpa
POPTR_0009s06060
I
0.729
Cla022499
Citrullus lanatus
Cla022499
I
0.729
AGL79
Arabidopsis lyrata
Al_scaffold_0005_914
I
0.729
Solyc10g080030.1
Solanum lycopersicum
Solyc10g080030.1
I
0.729
Solyc02g089210.2
Solanum lycopersicum
Solyc02g089210.2
I
0.729
estExt_fgenesh1_kg.C_260002
Physcomitrella patens
estExt_fgenesh1_kg.C_260002
I
0.729
GLYMA13G33031
Glycine max
GLYMA13G33031
I
0.729
Pavir.Da01333
Panicum virgatum
Pavir.Da01333
I
0.729
Bo2g161560
Brassica oleracea
Bo2g161560
I
0.729
GLYMA15G06314
Glycine max
GLYMA15G06314
I
0.729
LPERR03G05670
Leersia perrieri
LPERR03G05670
I
0.729
SELMODRAFT_450837
Selaginella moellendorffii
SELMODRAFT_450837
I
0.729
MDP0000144516
Malus domestica
MDP0000144516
I
0.729
Bo2g149440
Brassica oleracea
Bo2g149440
I
0.729
Eucgr.F02141
Eucalyptus grandis
Eucgr.F02141
I
0.729
SELMODRAFT_449545
Selaginella moellendorffii
SELMODRAFT_449545
I
0.729
Bostr.0556s0620
Boechera stricta
Bostr.0556s0620
I
0.729
SELMODRAFT_450804
Selaginella moellendorffii
SELMODRAFT_450804
I
0.729
SapurV1A.0027s0860
Salix purpurea
SapurV1A.0027s0860
I
0.729
SELMODRAFT_449594
Selaginella moellendorffii
SELMODRAFT_449594
I
0.729
Pm015397
Prunus mume
Pm015397
I
0.729
gene12120-v1.0-hybrid
Fragaria vesca
gene12120-v1.0-hybrid
I
0.723
gene30741-v1.0-hybrid
Fragaria vesca
gene30741-v1.0-hybrid
I
0.723
ENSMICG00000005703
Microcebus murinus
ENSMICG00000005703
I
0.711
Gorai.005G147200
Gossypium raimondii
Gorai.005G147200
I
0.708
Gorai.001G090000
Gossypium raimondii
Gorai.001G090000
I
0.708
Lus10005081.g
Linum usitatissimum
Lus10005081.g
I
0.708
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.708
Lus10034370.g
Linum usitatissimum
Lus10034370.g
I
0.708
Lus10020477.g
Linum usitatissimum
Lus10020477.g
I
0.708
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.708
Lus10005325.g
Linum usitatissimum
Lus10005325.g
I
0.708
Pavir.Db00414
Panicum virgatum
Pavir.Db00414
I
0.708
Eucgr.K02547
Eucalyptus grandis
Eucgr.K02547
I
0.708
Eucgr.I02600
Eucalyptus grandis
Eucgr.I02600
I
0.708
Eucgr.I02506
Eucalyptus grandis
Eucgr.I02506
N
0.708
PK08595.1
Cannabis sativa
PK08595.1
I
0.708
gene05027-v1.0-hybrid
Fragaria vesca
gene05027-v1.0-hybrid
I
0.708
Pavir.Ia04527
Panicum virgatum
Pavir.Ia04527
I
0.708
gene12119-v1.0-hybrid
Fragaria vesca
gene12119-v1.0-hybrid
I
0.708
Eucgr.I02059
Eucalyptus grandis
Eucgr.I02059
I
0.708
AGL79
Vitis vinifera
VIT_14s0083g01030
I
0.708
GRMZM2G059102
Zea mays
GRMZM2G059102
I
0.708
GSMUA_Achr2G11820_001
Musa acuminata
GSMUA_Achr2G11820_001
I
0.708
GRMZM2G046885
Zea mays
GRMZM2G046885
I
0.708
GLYMA19G04326
Glycine max
GLYMA19G04326
I
0.708
GLYMA08G07001
Glycine max
GLYMA08G07001
I
0.708
GLYMA13G06811
Glycine max
GLYMA13G06811
I
0.708
GSMUA_Achr5G10250_001
Musa acuminata
GSMUA_Achr5G10250_001
I
0.708
LPERR02G27330
Leersia perrieri
LPERR02G27330
I
0.708
OGLUM03G06330
Oryza glumaepatula
OGLUM03G06330
I
0.708
OMERI03G06190
Oryza meridionalis
OMERI03G06190
I
0.708
OBART03G06320
Oryza barthii
OBART03G06320
I
0.708
MTR_4g102530
Medicago truncatula
MTR_4g102530
I
0.708
MTR_1g041615
Medicago truncatula
MTR_1g041615
I
0.708
MTR_2g009890
Medicago truncatula
MTR_2g009890
I
0.708
TT16
Arabidopsis lyrata
fgenesh2_kg.6__2319__AT5G23260.2
I
0.708
Bra036201
Brassica rapa
Bra036201
I
0.708
AGL71
Arabidopsis thaliana
AT5G51870
I
0.708
BGIOSGA011317
Oryza indica
BGIOSGA011317
I
0.708
TT16
Arabidopsis thaliana
AT5G23260
I
0.708
AGL15
Arabidopsis thaliana
AT5G13790
D
0.708
AGL71
Arabidopsis lyrata
Al_scaffold_0008_1558
I
0.708
AGL79
Arabidopsis thaliana
AT3G30260
I
0.708
Bo3g165710
Brassica oleracea
Bo3g165710
I
0.708
Bo7g088660
Brassica oleracea
Bo7g088660
I
0.708
Bra026507
Brassica rapa
Bra026507
I
0.708
Bra029314
Brassica rapa
Bra029314
I
0.708
Bra025411
Brassica rapa
Bra025411
I
0.708
Bra020826
Brassica rapa
Bra020826
I
0.708
Bo9g009030
Brassica oleracea
Bo9g009030
I
0.708
ONIVA02G06550
Oryza nivara
ONIVA02G06550
I
0.708
OPUNC03G06100
Oryza punctata
OPUNC03G06100
I
0.708
cassava2598.m1
Manihot esculenta
cassava2598.m1
I
0.708
cassava39138.m1
Manihot esculenta
cassava39138.m1
I
0.708
Q38742_ANTMA
Antirrhinum majus
Q38742_ANTMA
D
0.708
squamosa
Antirrhinum majus
CAA45228.1
D
0.708
Cla023427
Citrullus lanatus
Cla023427
I
0.708
Pm025026
Prunus mume
Pm025026
I
0.708
Cucsa.174530
Cucumis sativus
Cucsa.174530
I
0.708
e_gw1.171.4.1
Physcomitrella patens
e_gw1.171.4.1
I
0.708
Bostr.10199s0104
Boechera stricta
Bostr.10199s0104
I
0.708
Cagra.4348s0011
Capsella grandiflora
Cagra.4348s0011
I
0.708
Aquca_035_00266
Aquilegia coerulea
Aquca_035_00266
I
0.708
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.708
e_gw1.209.37.1
Physcomitrella patens
e_gw1.209.37.1
I
0.708
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.708
Cla010989
Citrullus lanatus
Cla010989
I
0.708
Cla010047
Citrullus lanatus
Cla010047
I
0.708
PGSC0003DMG400026563
Solanum tuberosum
PGSC0003DMG400026563
I
0.708
POPTR_0004s11430
Populus trichocarpa
POPTR_0004s11430
I
0.708
PGSC0003DMG400001378
Solanum tuberosum
PGSC0003DMG400001378
I
0.708
OS03G0186600
Oryza sativa
OS03G0186600
I
0.708
ORGLA03G0061100
Oryza glaberrima
ORGLA03G0061100
I
0.708
ORUFI03G06210
Oryza rufipogon
ORUFI03G06210
I
0.708
POPTR_0017s13400
Populus trichocarpa
POPTR_0017s13400
I
0.708
PRUPE_ppa010308mg
Prunus persica
PRUPE_ppa010308mg
I
0.708
TCM_007324
Theobroma cacao
TCM_007324
I
0.708
TT16
Vitis vinifera
VIT_01s0011g01560
I
0.708
Si037358m.g
Setaria italica
Si037358m.g
I
0.708
Si007641m.g
Setaria italica
Si007641m.g
I
0.708
Sb01g044810
Sorghum bicolor
Sb01g044810
I
0.708
Carubv10002792m.g
Capsella rubella
Carubv10002792m.g
I
0.708