CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm004416
(
Prunus mume
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pm004416
T257034_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.750
0.750
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.750
0.750
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.750
0.750
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm004416
MADS box
9
56
KIDYLPARQVTFSKRRRGLFKKAAELSVLCESEVAVVIFSATGKLFDY
Links
Other
MADS box
family TFs
Other
Prunus mume
TFs
159 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa010822mg
Prunus persica
PRUPE_ppa010822mg
I
1.000
PRUPE_ppa011123mg
Prunus persica
PRUPE_ppa011123mg
I
0.979
Pm004417
Prunus mume
Pm004417
I
0.979
Pm004419
Prunus mume
Pm004419
I
0.958
Pm004415
Prunus mume
Pm004415
I
0.958
Pm004420
Prunus mume
Pm004420
I
0.958
PRUPE_ppb017585mg
Prunus persica
PRUPE_ppb017585mg
I
0.958
PRUPE_ppa010758mg
Prunus persica
PRUPE_ppa010758mg
I
0.958
PRUPE_ppa010714mg
Prunus persica
PRUPE_ppa010714mg
I
0.958
Pm004418
Prunus mume
Pm004418
I
0.938
PRUPE_ppa018667mg
Prunus persica
PRUPE_ppa018667mg
I
0.938
MDP0000378412
Malus domestica
MDP0000378412
I
0.875
MDP0000322567
Malus domestica
MDP0000322567
I
0.875
MDP0000255146
Malus domestica
MDP0000255146
I
0.854
Eucgr.F00420
Eucalyptus grandis
Eucgr.F00420
I
0.854
MDP0000259294
Malus domestica
MDP0000259294
I
0.854
POPTR_0002s10570
Populus trichocarpa
POPTR_0002s10570
I
0.833
MDP0000527190
Malus domestica
MDP0000527190
I
0.833
SapurV1A.0004s1140
Salix purpurea
SapurV1A.0004s1140
I
0.833
gene12120-v1.0-hybrid
Fragaria vesca
gene12120-v1.0-hybrid
I
0.830
cassava1567.valid.m1
Manihot esculenta
cassava1567.valid.m1
I
0.812
TCM_034501
Theobroma cacao
TCM_034501
I
0.812
Gorai.002G142700
Gossypium raimondii
Gorai.002G142700
I
0.812
cassava31070.valid.m1
Manihot esculenta
cassava31070.valid.m1
I
0.812
AGL24
Vitis vinifera
VIT_18s0001g07460
I
0.812
Gorai.010G035000
Gossypium raimondii
Gorai.010G035000
I
0.812
cassava31071.valid.m1
Manihot esculenta
cassava31071.valid.m1
I
0.812
Solyc11g010570.1
Solanum lycopersicum
Solyc11g010570.1
I
0.792
PGSC0003DMG400016203
Solanum tuberosum
PGSC0003DMG400016203
I
0.792
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.792
Cla014322
Citrullus lanatus
Cla014322
I
0.792
Cla022499
Citrullus lanatus
Cla022499
I
0.792
PGSC0003DMG400009363
Solanum tuberosum
PGSC0003DMG400009363
I
0.792
Cucsa.104010
Cucumis sativus
Cucsa.104010
I
0.792
Gorai.005G225500
Gossypium raimondii
Gorai.005G225500
I
0.792
MDP0000277582
Malus domestica
MDP0000277582
N
0.792
orange1.1g027190m.g
Citrus sinensis
orange1.1g027190m.g
I
0.792
orange1.1g040972m.g
Citrus sinensis
orange1.1g040972m.g
I
0.792
MDP0000143531
Malus domestica
MDP0000143531
N
0.771
LjT38P01.180.nd
Lotus japonicus
LjT38P01.180.nd
I
0.771
PRUPE_ppa022274mg
Prunus persica
PRUPE_ppa022274mg
I
0.771
TCM_000992
Theobroma cacao
TCM_000992
I
0.771
orange1.1g034384m.g
Citrus sinensis
orange1.1g034384m.g
I
0.771
evm.TU.supercontig_21.11
Carica papaya
evm.TU.supercontig_21.11
I
0.771
Aquca_015_00177
Aquilegia coerulea
Aquca_015_00177
I
0.771
mgf015964m
Mimulus guttatus
mgf015964m
I
0.771
Cucsa.160640
Cucumis sativus
Cucsa.160640
I
0.771
Cagra.2171s0007
Capsella grandiflora
Cagra.2171s0007
I
0.771
Carubv10005653m.g
Capsella rubella
Carubv10005653m.g
I
0.771
Ciclev10026457m.g
Citrus clementina
Ciclev10026457m.g
I
0.771
TCM_007378
Theobroma cacao
TCM_007378
I
0.771
cassava42879.valid.m1
Manihot esculenta
cassava42879.valid.m1
I
0.771
Ca_12416
Cicer arietinum
Ca_12416
I
0.771
GLYMA01G02880
Glycine max
GLYMA01G02880
I
0.771
GLYMA04G10015
Glycine max
GLYMA04G10015
I
0.771
GLYMA06G10020
Glycine max
GLYMA06G10020
I
0.771
SVP
Arabidopsis thaliana
AT2G22540
D
0.771
gene05180-v1.0-hybrid
Fragaria vesca
gene05180-v1.0-hybrid
I
0.766
Ciclev10029776m.g
Citrus clementina
Ciclev10029776m.g
I
0.750
GLYMA02G04710
Glycine max
GLYMA02G04710
I
0.750
gene03748-v1.0-hybrid
Fragaria vesca
gene03748-v1.0-hybrid
I
0.750
29838.m001690
Ricinus communis
29838.m001690
I
0.750
evm.TU.supercontig_55.31
Carica papaya
evm.TU.supercontig_55.31
I
0.750
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.750
GRMZM2G059102
Zea mays
GRMZM2G059102
I
0.750
GSMUA_Achr3G06800_001
Musa acuminata
GSMUA_Achr3G06800_001
I
0.750
PRUPE_ppa011063mg
Prunus persica
PRUPE_ppa011063mg
I
0.750
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.750
AGL24
Arabidopsis lyrata
fgenesh2_kg.7__1822__AT4G24540.1
I
0.750
GSMUA_Achr9G15180_001
Musa acuminata
GSMUA_Achr9G15180_001
I
0.750
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.750
Pavir.Ia04527
Panicum virgatum
Pavir.Ia04527
I
0.750
BGIOSGA011317
Oryza indica
BGIOSGA011317
I
0.750
AGL24
Arabidopsis thaliana
AT4G24540
I
0.750
SapurV1A.0187s0010
Salix purpurea
SapurV1A.0187s0010
I
0.750
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.750
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.750
Bo7g109590
Brassica oleracea
Bo7g109590
I
0.750
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.750
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.750
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.750
MDP0000209705
Malus domestica
MDP0000209705
I
0.750
Bra038511
Brassica rapa
Bra038511
I
0.750
MDP0000311107
Malus domestica
MDP0000311107
N
0.750
Bra019221
Brassica rapa
Bra019221
I
0.750
Pm022002
Prunus mume
Pm022002
I
0.750
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.750
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.750
ORGLA03G0061100
Oryza glaberrima
ORGLA03G0061100
I
0.750
OPUNC03G06100
Oryza punctata
OPUNC03G06100
I
0.750
POPTR_0007s03290
Populus trichocarpa
POPTR_0007s03290
I
0.750
Sb01g044810
Sorghum bicolor
Sb01g044810
I
0.750
ONIVA02G06550
Oryza nivara
ONIVA02G06550
I
0.750
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.750
POPTR_0007s03270
Populus trichocarpa
POPTR_0007s03270
I
0.750
Ca_21060
Cicer arietinum
Ca_21060
I
0.750
OMERI03G06190
Oryza meridionalis
OMERI03G06190
I
0.750
Ca_01491
Cicer arietinum
Ca_01491
I
0.750
ORUFI03G06210
Oryza rufipogon
ORUFI03G06210
I
0.750
OBART03G06320
Oryza barthii
OBART03G06320
I
0.750
OS03G0186600
Oryza sativa
OS03G0186600
I
0.750
Pm002166
Prunus mume
Pm002166
I
0.750
OGLUM03G06330
Oryza glumaepatula
OGLUM03G06330
I
0.750
Si037358m.g
Setaria italica
Si037358m.g
I
0.750
gene03714-v1.0-hybrid
Fragaria vesca
gene03714-v1.0-hybrid
I
0.745
Traes_7DS_366A869CF
Triticum aestivum
Traes_7DS_366A869CF
I
0.732
MTR_5g066180
Medicago truncatula
MTR_5g066180
I
0.729
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.729
Solyc01g105800.2
Solanum lycopersicum
Solyc01g105800.2
I
0.729
gene12119-v1.0-hybrid
Fragaria vesca
gene12119-v1.0-hybrid
I
0.729
VIT_03s0017g00360
Vitis vinifera
VIT_03s0017g00360
I
0.729
Gorai.008G017200
Gossypium raimondii
Gorai.008G017200
I
0.729
PGSC0003DMG400033570
Solanum tuberosum
PGSC0003DMG400033570
I
0.729
Bra030228
Brassica rapa
Bra030228
I
0.729
Gorai.013G055700
Gossypium raimondii
Gorai.013G055700
I
0.729
Bra013812
Brassica rapa
Bra013812
I
0.729
Gorai.008G092300
Gossypium raimondii
Gorai.008G092300
I
0.729
gene20808-v1.0-hybrid
Fragaria vesca
gene20808-v1.0-hybrid
I
0.729
VIT_15s0107g00120
Vitis vinifera
VIT_15s0107g00120
I
0.729
Thhalv10026757m.g
Eutrema salsugineum
Thhalv10026757m.g
I
0.729
mgf018870m
Mimulus guttatus
mgf018870m
I
0.729
LPERR03G05670
Leersia perrieri
LPERR03G05670
I
0.729
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.729
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.729
Bo1g039080
Brassica oleracea
Bo1g039080
I
0.729
GLYMA15G06302
Glycine max
GLYMA15G06302
I
0.729
Eucgr.F02141
Eucalyptus grandis
Eucgr.F02141
I
0.729
Eucgr.F02145
Eucalyptus grandis
Eucgr.F02145
I
0.729
Solyc01g087990.2
Solanum lycopersicum
Solyc01g087990.2
I
0.729
MDP0000233948
Malus domestica
MDP0000233948
I
0.729
Pavir.Ib00555
Panicum virgatum
Pavir.Ib00555
I
0.729
Bostr.7867s0261
Boechera stricta
Bostr.7867s0261
I
0.729
gene30741-v1.0-hybrid
Fragaria vesca
gene30741-v1.0-hybrid
I
0.723
OB11G21480
Oryza brachyantha
OB11G21480
I
0.714
PGSC0003DMG401006771
Solanum tuberosum
PGSC0003DMG401006771
I
0.708
SapurV1A.0463s0130
Salix purpurea
SapurV1A.0463s0130
I
0.708
PK20651.1
Cannabis sativa
PK20651.1
I
0.708
POPTR_0017s07170
Populus trichocarpa
POPTR_0017s07170
I
0.708
VIT_03s0017g00440
Vitis vinifera
VIT_03s0017g00440
I
0.708
mgf023192m
Mimulus guttatus
mgf023192m
I
0.708
mgf025830m
Mimulus guttatus
mgf025830m
I
0.708
GLYMA12G17721
Glycine max
GLYMA12G17721
I
0.708
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.708
GLYMA15G06314
Glycine max
GLYMA15G06314
I
0.708
fgenesh1_pg.scaffold_118000119
Physcomitrella patens
fgenesh1_pg.scaffold_118000119
I
0.708
GSMUA_Achr10G19290_001
Musa acuminata
GSMUA_Achr10G19290_001
I
0.708
Cucsa.331840
Cucumis sativus
Cucsa.331840
I
0.708
e_gw1.55.13.1
Physcomitrella patens
e_gw1.55.13.1
I
0.708
Eucgr.I00556
Eucalyptus grandis
Eucgr.I00556
I
0.708
VIT_15s0024g02000
Vitis vinifera
VIT_15s0024g02000
I
0.708
Traes_4DL_67EFB6303
Triticum aestivum
Traes_4DL_67EFB6303
I
0.708
MDP0000132226
Malus domestica
MDP0000132226
N
0.708
BRADI1G72150
Brachypodium distachyon
BRADI1G72150
I
0.708
F775_26069
Aegilops tauschii
F775_26069
I
0.708
VIT_00s0729g00010
Vitis vinifera
VIT_00s0729g00010
I
0.708
VIT_03s0167g00100
Vitis vinifera
VIT_03s0167g00100
I
0.708
VIT_03s0017g00450
Vitis vinifera
VIT_03s0017g00450
I
0.708
gene05027-v1.0-hybrid
Fragaria vesca
gene05027-v1.0-hybrid
I
0.708
Traes_4BL_410DEBFD3
Triticum aestivum
Traes_4BL_410DEBFD3
I
0.708