Pm004419 (Prunus mume)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Pm004419 T257037_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm004419 MADS box 13 60

Links

Other MADS box family TFs
Other Prunus mume TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 1.000
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.979
Pm004417 Prunus mume Pm004417 I 0.979
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.958
Pm004416 Prunus mume Pm004416 I 0.958
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.958
Pm004420 Prunus mume Pm004420 I 0.958
Pm004418 Prunus mume Pm004418 I 0.938
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.938
MDP0000378412 Malus domestica MDP0000378412 I 0.917
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.917
Pm004415 Prunus mume Pm004415 I 0.917
MDP0000322567 Malus domestica MDP0000322567 I 0.896
MDP0000259294 Malus domestica MDP0000259294 I 0.896
MDP0000255146 Malus domestica MDP0000255146 I 0.875
MDP0000527190 Malus domestica MDP0000527190 I 0.875
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.833
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.833
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.833
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.812
TCM_034501 Theobroma cacao TCM_034501 I 0.812
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.812
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.812
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.812
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.812
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.812
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.812
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.809
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.792
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.792
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.792
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.792
MDP0000277582 Malus domestica MDP0000277582 N 0.792
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.792
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.792
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.792
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.792
Cla022499 Citrullus lanatus Cla022499 I 0.792
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.771
Bra019221 Brassica rapa Bra019221 I 0.771
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.771
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.771
MDP0000143531 Malus domestica MDP0000143531 N 0.771
Cla014322 Citrullus lanatus Cla014322 I 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
TCM_000992 Theobroma cacao TCM_000992 I 0.771
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.771
Ca_12416 Cicer arietinum Ca_12416 I 0.771
Bo7g109590 Brassica oleracea Bo7g109590 I 0.771
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.771
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.771
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.771
SVP Arabidopsis thaliana AT2G22540 D 0.771
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.771
AGL24 Arabidopsis thaliana AT4G24540 I 0.771
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.750
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.750
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.750
mgf015964m Mimulus guttatus mgf015964m I 0.750
OS03G0186600 Oryza sativa OS03G0186600 I 0.750
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.750
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.750
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.750
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.750
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.750
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.750
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.750
Bo8g101000 Brassica oleracea Bo8g101000 I 0.750
MDP0000311107 Malus domestica MDP0000311107 N 0.750
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.750
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.750
Bra038511 Brassica rapa Bra038511 I 0.750
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.750
Bra013812 Brassica rapa Bra013812 I 0.750
MDP0000209705 Malus domestica MDP0000209705 I 0.750
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.750
SVP Vitis vinifera VIT_00s0313g00070 I 0.750
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.750
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.750
Si037358m.g Setaria italica Si037358m.g I 0.750
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.750
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.750
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.750
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.750
TCM_007378 Theobroma cacao TCM_007378 I 0.750
OBART03G06320 Oryza barthii OBART03G06320 I 0.750
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.750
Ca_01491 Cicer arietinum Ca_01491 I 0.750
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.750
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.750
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.750
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.745
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.729
Bo4g149800 Brassica oleracea Bo4g149800 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
Bra030228 Brassica rapa Bra030228 I 0.729
MDP0000233948 Malus domestica MDP0000233948 I 0.729
29838.m001690 Ricinus communis 29838.m001690 I 0.729
Pm022002 Prunus mume Pm022002 I 0.729
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.729
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.729
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.729
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.729
Pm002166 Prunus mume Pm002166 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.729
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.729
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.729
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.729
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.723
PK20651.1 Cannabis sativa PK20651.1 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.708
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.708
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.708
mgf018870m Mimulus guttatus mgf018870m I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.708
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
MDP0000132226 Malus domestica MDP0000132226 N 0.708
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
F775_26069 Aegilops tauschii F775_26069 I 0.708
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.708
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.708
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.702