CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene03748-v1.0-hybrid
(
Fragaria vesca
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
gene03748-v1.0-hybrid
T258299_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SVP
M06984_2.00
Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH
Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b
0.745
0.745
SVP
M06985_2.00
Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG
Dap-seq
OMalley et al.(2016)
SVP_col_v3b
0.745
0.745
SVP
M08424_2.00
Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN
ChIP-chip
Mathelier et al.(2014)
MA0555.1
0.745
0.745
AGL15
M06992_2.00
Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW
Dap-seq
OMalley et al.(2016)
AGL15_col_a
0.702
0.702
AGL15
M06993_2.00
Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH
Dap-seq
OMalley et al.(2016)
AGL15_colamp_a
0.702
0.702
SOC1
M08425_2.00
Arabidopsis thaliana
CCAAAAAWRGAAAND
HNTTTCYWTTTTTGG
ChIP-chip
Mathelier et al.(2014)
MA0554.1
0.702
0.702
AGL15
M10927_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_01
0.702
0.702
AGL15
M10928_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL15_02
0.702
0.702
SOC1
M10915_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AGL20_01
0.702
0.702
Q9ATE3_PETHY
M11008_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$FBP28_01
0.702
0.702
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna03748.1-v1.0-hybrid
MADS box
13
59
KIDNLPARQVTYSKRRRGLLKKARELSVLCDCEFSVIIFSATGKLCE
Links
Other
MADS box
family TFs
Other
Fragaria vesca
TFs
165 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene03714-v1.0-hybrid
Fragaria vesca
gene03714-v1.0-hybrid
I
0.957
gene12120-v1.0-hybrid
Fragaria vesca
gene12120-v1.0-hybrid
I
0.894
Gorai.002G142700
Gossypium raimondii
Gorai.002G142700
I
0.809
Gorai.010G035000
Gossypium raimondii
Gorai.010G035000
I
0.809
orange1.1g027190m.g
Citrus sinensis
orange1.1g027190m.g
I
0.809
orange1.1g040972m.g
Citrus sinensis
orange1.1g040972m.g
I
0.809
gene05180-v1.0-hybrid
Fragaria vesca
gene05180-v1.0-hybrid
I
0.809
SapurV1A.0004s1140
Salix purpurea
SapurV1A.0004s1140
I
0.792
POPTR_0002s10570
Populus trichocarpa
POPTR_0002s10570
I
0.792
Aquca_015_00177
Aquilegia coerulea
Aquca_015_00177
I
0.787
AMTR_s00127p00060060
Amborella trichopoda
AMTR_s00127p00060060
I
0.771
TCM_034501
Theobroma cacao
TCM_034501
I
0.771
Eucgr.F00420
Eucalyptus grandis
Eucgr.F00420
I
0.771
cassava1567.valid.m1
Manihot esculenta
cassava1567.valid.m1
I
0.771
cassava31071.valid.m1
Manihot esculenta
cassava31071.valid.m1
I
0.771
cassava31070.valid.m1
Manihot esculenta
cassava31070.valid.m1
I
0.771
PRUPE_ppa018667mg
Prunus persica
PRUPE_ppa018667mg
I
0.771
Cla014322
Citrullus lanatus
Cla014322
I
0.766
Eucgr.F02141
Eucalyptus grandis
Eucgr.F02141
I
0.766
Cucsa.104010
Cucumis sativus
Cucsa.104010
I
0.766
Cla022499
Citrullus lanatus
Cla022499
I
0.766
Pm004416
Prunus mume
Pm004416
I
0.750
PRUPE_ppa010822mg
Prunus persica
PRUPE_ppa010822mg
I
0.750
Pm004420
Prunus mume
Pm004420
I
0.750
GLYMA02G33040
Glycine max
GLYMA02G33040
I
0.750
gene20808-v1.0-hybrid
Fragaria vesca
gene20808-v1.0-hybrid
I
0.750
SapurV1A.0228s0130
Salix purpurea
SapurV1A.0228s0130
I
0.750
MDP0000233948
Malus domestica
MDP0000233948
I
0.750
PRUPE_ppa010714mg
Prunus persica
PRUPE_ppa010714mg
I
0.750
Eucgr.F02146
Eucalyptus grandis
Eucgr.F02146
I
0.750
PRUPE_ppa011123mg
Prunus persica
PRUPE_ppa011123mg
I
0.745
PRUPE_ppa011063mg
Prunus persica
PRUPE_ppa011063mg
I
0.745
SVP
Vitis vinifera
VIT_00s0313g00070
I
0.745
Pm004417
Prunus mume
Pm004417
I
0.745
Pm002166
Prunus mume
Pm002166
I
0.745
AGL24
Vitis vinifera
VIT_18s0001g07460
I
0.745
Solyc01g087990.2
Solanum lycopersicum
Solyc01g087990.2
I
0.745
Ciclev10026457m.g
Citrus clementina
Ciclev10026457m.g
I
0.745
MDP0000209705
Malus domestica
MDP0000209705
I
0.745
Lus10035942.g
Linum usitatissimum
Lus10035942.g
I
0.745
MDP0000255146
Malus domestica
MDP0000255146
I
0.745
orange1.1g034384m.g
Citrus sinensis
orange1.1g034384m.g
I
0.745
Thhalv10000308m.g
Eutrema salsugineum
Thhalv10000308m.g
I
0.745
SapurV1A.1777s0020
Salix purpurea
SapurV1A.1777s0020
I
0.745
Lus10025719.g
Linum usitatissimum
Lus10025719.g
I
0.745
Gorai.005G225500
Gossypium raimondii
Gorai.005G225500
I
0.745
Bostr.19427s0024
Boechera stricta
Bostr.19427s0024
I
0.745
Cucsa.160640
Cucumis sativus
Cucsa.160640
I
0.745
Cagra.1080s0011
Capsella grandiflora
Cagra.1080s0011
I
0.745
Carubv10023941m.g
Capsella rubella
Carubv10023941m.g
I
0.745
Eucgr.F02145
Eucalyptus grandis
Eucgr.F02145
I
0.745
cassava42879.valid.m1
Manihot esculenta
cassava42879.valid.m1
I
0.745
Pm004415
Prunus mume
Pm004415
I
0.745
Bo7g109590
Brassica oleracea
Bo7g109590
I
0.745
Bra019221
Brassica rapa
Bra019221
I
0.745
Bo8g101000
Brassica oleracea
Bo8g101000
I
0.745
SVP
Arabidopsis lyrata
fgenesh2_kg.4__174__AT2G22540.1
I
0.745
Bra038511
Brassica rapa
Bra038511
I
0.745
GLYMA01G02880
Glycine max
GLYMA01G02880
I
0.745
AGL24
Arabidopsis lyrata
fgenesh2_kg.7__1822__AT4G24540.1
I
0.745
POPTR_0007s14300
Populus trichocarpa
POPTR_0007s14300
I
0.745
MTR_1g053070
Medicago truncatula
MTR_1g053070
I
0.745
SVP
Arabidopsis thaliana
AT2G22540
D
0.745
AGL24
Arabidopsis thaliana
AT4G24540
I
0.745
Pm004419
Prunus mume
Pm004419
I
0.729
AGL18
Vitis vinifera
VIT_08s0007g08790
I
0.729
PGSC0003DMG400009363
Solanum tuberosum
PGSC0003DMG400009363
I
0.729
Ca_19854
Cicer arietinum
Ca_19854
I
0.729
PGSC0003DMG400033570
Solanum tuberosum
PGSC0003DMG400033570
I
0.729
gene12119-v1.0-hybrid
Fragaria vesca
gene12119-v1.0-hybrid
I
0.729
POPTR_0006s04730
Populus trichocarpa
POPTR_0006s04730
I
0.729
Bo1g039080
Brassica oleracea
Bo1g039080
I
0.729
PRUPE_ppb017585mg
Prunus persica
PRUPE_ppb017585mg
I
0.729
MDP0000135652
Malus domestica
MDP0000135652
I
0.729
Solyc01g105800.2
Solanum lycopersicum
Solyc01g105800.2
I
0.729
MDP0000144516
Malus domestica
MDP0000144516
I
0.729
Bra013812
Brassica rapa
Bra013812
I
0.729
gene05027-v1.0-hybrid
Fragaria vesca
gene05027-v1.0-hybrid
I
0.723
GSMUA_Achr3G06800_001
Musa acuminata
GSMUA_Achr3G06800_001
I
0.723
GLYMA04G10015
Glycine max
GLYMA04G10015
I
0.723
GLYMA06G10020
Glycine max
GLYMA06G10020
I
0.723
evm.TU.supercontig_55.31
Carica papaya
evm.TU.supercontig_55.31
I
0.723
GLYMA15G06302
Glycine max
GLYMA15G06302
I
0.723
Bra030228
Brassica rapa
Bra030228
I
0.723
Thhalv10026757m.g
Eutrema salsugineum
Thhalv10026757m.g
I
0.723
PK20651.1
Cannabis sativa
PK20651.1
I
0.723
SapurV1A.0187s0010
Salix purpurea
SapurV1A.0187s0010
I
0.723
Bo4g149800
Brassica oleracea
Bo4g149800
I
0.723
Gorai.003G090800
Gossypium raimondii
Gorai.003G090800
I
0.723
mgf015964m
Mimulus guttatus
mgf015964m
I
0.723
GLYMA02G04710
Glycine max
GLYMA02G04710
I
0.723
GSMUA_Achr9G15180_001
Musa acuminata
GSMUA_Achr9G15180_001
I
0.723
Pm022002
Prunus mume
Pm022002
I
0.723
SELMODRAFT_450937
Selaginella moellendorffii
SELMODRAFT_450937
I
0.723
PGSC0003DMG400016203
Solanum tuberosum
PGSC0003DMG400016203
I
0.723
Solyc11g010570.1
Solanum lycopersicum
Solyc11g010570.1
I
0.723
VIT_03s0017g00360
Vitis vinifera
VIT_03s0017g00360
I
0.723
PGSC0003DMG401006771
Solanum tuberosum
PGSC0003DMG401006771
I
0.723
SELMODRAFT_450818
Selaginella moellendorffii
SELMODRAFT_450818
I
0.723
POPTR_0007s03270
Populus trichocarpa
POPTR_0007s03270
I
0.723
PRUPE_ppa022274mg
Prunus persica
PRUPE_ppa022274mg
I
0.723
POPTR_0007s03290
Populus trichocarpa
POPTR_0007s03290
I
0.723
OB11G21480
Oryza brachyantha
OB11G21480
I
0.714
MDP0000322567
Malus domestica
MDP0000322567
I
0.708
Pm004418
Prunus mume
Pm004418
I
0.708
MDP0000527190
Malus domestica
MDP0000527190
I
0.708
MTR_5g032520
Medicago truncatula
MTR_5g032520
I
0.708
evm.TU.contig_33612
Carica papaya
evm.TU.contig_33612
I
0.708
MDP0000277582
Malus domestica
MDP0000277582
N
0.708
cassava3099.m1
Manihot esculenta
cassava3099.m1
I
0.708
VIT_15s0107g00120
Vitis vinifera
VIT_15s0107g00120
I
0.708
VIT_03s0167g00100
Vitis vinifera
VIT_03s0167g00100
I
0.708
Ca_21060
Cicer arietinum
Ca_21060
I
0.708
TCM_007378
Theobroma cacao
TCM_007378
I
0.708
VIT_03s0017g00440
Vitis vinifera
VIT_03s0017g00440
I
0.708
cassava26340.m1
Manihot esculenta
cassava26340.m1
I
0.708
Eucgr.I02600
Eucalyptus grandis
Eucgr.I02600
I
0.708
MTR_5g032150
Medicago truncatula
MTR_5g032150
I
0.708
Carubv10005653m.g
Capsella rubella
Carubv10005653m.g
I
0.708
Cagra.2171s0007
Capsella grandiflora
Cagra.2171s0007
I
0.708
PRUPE_ppa010758mg
Prunus persica
PRUPE_ppa010758mg
I
0.708
Bostr.7867s0261
Boechera stricta
Bostr.7867s0261
I
0.708
SapurV1A.0068s0650
Salix purpurea
SapurV1A.0068s0650
I
0.708
Ciclev10005698m.g
Citrus clementina
Ciclev10005698m.g
I
0.708
orange1.1g039982m.g
Citrus sinensis
orange1.1g039982m.g
I
0.708
29838.m001690
Ricinus communis
29838.m001690
I
0.708
SapurV1A.0463s0130
Salix purpurea
SapurV1A.0463s0130
I
0.702
AGL15
Arabidopsis thaliana
AT5G13790
D
0.702
Sb01g044810
Sorghum bicolor
Sb01g044810
I
0.702
chr4.CM0126.630.nc
Lotus japonicus
chr4.CM0126.630.nc
I
0.702
TCM_024579
Theobroma cacao
TCM_024579
I
0.702
MDP0000259294
Malus domestica
MDP0000259294
I
0.702
Pavir.Ia04527
Panicum virgatum
Pavir.Ia04527
I
0.702
MDP0000143531
Malus domestica
MDP0000143531
N
0.702
Bo4g195720
Brassica oleracea
Bo4g195720
I
0.702
BGIOSGA011317
Oryza indica
BGIOSGA011317
I
0.702
SapurV1A.0019s1110
Salix purpurea
SapurV1A.0019s1110
I
0.702
MDP0000378412
Malus domestica
MDP0000378412
I
0.702
Solyc04g076680.2
Solanum lycopersicum
Solyc04g076680.2
I
0.702
PGSC0003DMG400009349
Solanum tuberosum
PGSC0003DMG400009349
I
0.702
ONIVA02G06550
Oryza nivara
ONIVA02G06550
I
0.702
e_gw1.209.37.1
Physcomitrella patens
e_gw1.209.37.1
I
0.702
mgf019667m
Mimulus guttatus
mgf019667m
I
0.702
Q9ATE3_PETHY
Petunia x hybrida
Q9ATE3_PETHY
D
0.702
GSMUA_Achr3G02280_001
Musa acuminata
GSMUA_Achr3G02280_001
I
0.702
e_gw1.171.4.1
Physcomitrella patens
e_gw1.171.4.1
I
0.702
Cucsa.331900
Cucumis sativus
Cucsa.331900
I
0.702
OMERI03G06190
Oryza meridionalis
OMERI03G06190
I
0.702
OGLUM03G06330
Oryza glumaepatula
OGLUM03G06330
I
0.702
OBART03G06320
Oryza barthii
OBART03G06320
I
0.702
Cucsa.115490
Cucumis sativus
Cucsa.115490
I
0.702
Eucgr.E00516
Eucalyptus grandis
Eucgr.E00516
I
0.702
GSMUA_Achr1G03630_001
Musa acuminata
GSMUA_Achr1G03630_001
I
0.702
OS03G0186600
Oryza sativa
OS03G0186600
I
0.702
gene30741-v1.0-hybrid
Fragaria vesca
gene30741-v1.0-hybrid
I
0.702
Cla002388
Citrullus lanatus
Cla002388
I
0.702
VIT_15s0024g02000
Vitis vinifera
VIT_15s0024g02000
I
0.702
ORUFI03G06210
Oryza rufipogon
ORUFI03G06210
I
0.702
ORGLA03G0061100
Oryza glaberrima
ORGLA03G0061100
I
0.702
GRMZM2G059102
Zea mays
GRMZM2G059102
I
0.702
GSMUA_Achr10G19290_001
Musa acuminata
GSMUA_Achr10G19290_001
I
0.702
evm.TU.supercontig_21.11
Carica papaya
evm.TU.supercontig_21.11
I
0.702
OPUNC03G06100
Oryza punctata
OPUNC03G06100
I
0.702
Lus10005325.g
Linum usitatissimum
Lus10005325.g
I
0.702
gene11073-v1.0-hybrid
Fragaria vesca
gene11073-v1.0-hybrid
N
0.700