MDP0000527190 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000527190 T258762_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.708 0.708
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.708 0.708
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000527190 MADS box 13 60

Links

Other MADS box family TFs
Other Malus domestica TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000378412 Malus domestica MDP0000378412 I 0.958
MDP0000259294 Malus domestica MDP0000259294 I 0.938
MDP0000322567 Malus domestica MDP0000322567 I 0.896
Pm004419 Prunus mume Pm004419 I 0.875
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.875
Pm004417 Prunus mume Pm004417 I 0.854
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.854
Pm004416 Prunus mume Pm004416 I 0.833
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.833
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.833
Pm004420 Prunus mume Pm004420 I 0.833
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.833
MDP0000255146 Malus domestica MDP0000255146 I 0.833
Pm004418 Prunus mume Pm004418 I 0.812
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.812
MDP0000277582 Malus domestica MDP0000277582 N 0.812
MDP0000143531 Malus domestica MDP0000143531 N 0.792
Pm004415 Prunus mume Pm004415 I 0.792
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.771
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.771
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.771
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.771
OS03G0186600 Oryza sativa OS03G0186600 I 0.771
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.771
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.771
Si037358m.g Setaria italica Si037358m.g I 0.771
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.771
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.771
MDP0000311107 Malus domestica MDP0000311107 N 0.771
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.771
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.771
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.771
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
OBART03G06320 Oryza barthii OBART03G06320 I 0.771
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.771
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.771
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.771
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.771
TCM_034501 Theobroma cacao TCM_034501 I 0.750
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.750
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.750
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.750
Ca_01491 Cicer arietinum Ca_01491 I 0.750
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.750
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.750
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.750
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.750
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.750
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.750
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.750
mgf023192m Mimulus guttatus mgf023192m I 0.750
ANR1 Arabidopsis thaliana AT2G14210 I 0.750
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.750
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.750
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.750
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.750
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.750
F775_26069 Aegilops tauschii F775_26069 I 0.750
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.750
mgf025830m Mimulus guttatus mgf025830m I 0.750
29804.m001536 Ricinus communis 29804.m001536 I 0.729
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.729
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.729
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.729
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.729
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.729
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.729
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.729
SVP Arabidopsis thaliana AT2G22540 D 0.729
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.729
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.729
Bra013812 Brassica rapa Bra013812 I 0.729
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.729
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.729
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.729
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.729
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.729
Bo1g039080 Brassica oleracea Bo1g039080 I 0.729
MDP0000132226 Malus domestica MDP0000132226 N 0.729
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.729
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.729
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.729
TCM_000992 Theobroma cacao TCM_000992 I 0.729
Bo7g025330 Brassica oleracea Bo7g025330 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.708
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.708
gene25618-v1.0-hybrid Fragaria vesca gene25618-v1.0-hybrid I 0.708
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.708
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.708
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.708
MDP0000209705 Malus domestica MDP0000209705 I 0.708
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.708
Lus10028214.g Linum usitatissimum Lus10028214.g I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.708
Cla014322 Citrullus lanatus Cla014322 I 0.708
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.708
GRMZM2G055782 Zea mays GRMZM2G055782 I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
LPERR04G11770 Leersia perrieri LPERR04G11770 I 0.708
MTR_2g009890 Medicago truncatula MTR_2g009890 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
OPUNC04G12890 Oryza punctata OPUNC04G12890 I 0.708
GLYMA08G07001 Glycine max GLYMA08G07001 I 0.708
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.708
Bo8g101000 Brassica oleracea Bo8g101000 I 0.708
Bo7g109590 Brassica oleracea Bo7g109590 I 0.708
AGL24 Arabidopsis thaliana AT4G24540 I 0.708
Bra019221 Brassica rapa Bra019221 I 0.708
Bra038511 Brassica rapa Bra038511 I 0.708
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.708
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.708
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.708
PRUPE_ppa024736mg Prunus persica PRUPE_ppa024736mg I 0.708
mgf015964m Mimulus guttatus mgf015964m I 0.708
mgf007519m Mimulus guttatus mgf007519m I 0.708
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.708
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.708
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.708
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.708
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.708
cassava39185.m1 Manihot esculenta cassava39185.m1 I 0.708
Pm021962 Prunus mume Pm021962 I 0.708
TCM_007324 Theobroma cacao TCM_007324 I 0.708
Solyc12g088080.1 Solanum lycopersicum Solyc12g088080.1 I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
SVP Vitis vinifera VIT_00s0313g00070 I 0.708
VIT_03s0097g00160 Vitis vinifera VIT_03s0097g00160 I 0.708
Cla022499 Citrullus lanatus Cla022499 I 0.708
Ca_21060 Cicer arietinum Ca_21060 I 0.708
Eucgr.I02600 Eucalyptus grandis Eucgr.I02600 I 0.708