MDP0000255146 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000255146 T258712_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.792 0.792
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.792 0.792
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.792 0.792
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000255146 MADS box 108 155

Links

Other MADS box family TFs
Other Malus domestica TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000322567 Malus domestica MDP0000322567 I 0.938
MDP0000259294 Malus domestica MDP0000259294 I 0.896
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.875
Pm004419 Prunus mume Pm004419 I 0.875
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.875
MDP0000378412 Malus domestica MDP0000378412 I 0.875
Pm004417 Prunus mume Pm004417 I 0.875
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.854
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.854
Pm004416 Prunus mume Pm004416 I 0.854
Pm004420 Prunus mume Pm004420 I 0.854
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.854
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.833
Bo7g109590 Brassica oleracea Bo7g109590 I 0.833
MDP0000277582 Malus domestica MDP0000277582 N 0.833
Pm004418 Prunus mume Pm004418 I 0.833
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.833
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.833
MDP0000527190 Malus domestica MDP0000527190 I 0.833
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.830
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.812
Pm004415 Prunus mume Pm004415 I 0.812
AGL24 Arabidopsis thaliana AT4G24540 I 0.812
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.812
Bra019221 Brassica rapa Bra019221 I 0.812
MDP0000143531 Malus domestica MDP0000143531 N 0.812
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.812
SVP Arabidopsis thaliana AT2G22540 D 0.809
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.792
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.792
TCM_034501 Theobroma cacao TCM_034501 I 0.792
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.792
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.792
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.792
SVP Vitis vinifera VIT_00s0313g00070 I 0.792
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.792
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.792
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.792
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.792
MDP0000311107 Malus domestica MDP0000311107 N 0.792
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.792
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.792
Bra013812 Brassica rapa Bra013812 I 0.792
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.792
Bo8g101000 Brassica oleracea Bo8g101000 I 0.792
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.792
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.792
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.792
Bo1g039080 Brassica oleracea Bo1g039080 I 0.792
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.792
Bra038511 Brassica rapa Bra038511 I 0.792
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.792
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.792
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.792
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.792
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.792
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.792
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.792
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.787
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.787
GSMUA_Achr9G15180_001 Musa acuminata GSMUA_Achr9G15180_001 I 0.771
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.771
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.771
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.771
Bra030228 Brassica rapa Bra030228 I 0.771
Bo4g149800 Brassica oleracea Bo4g149800 I 0.771
GSMUA_Achr3G06800_001 Musa acuminata GSMUA_Achr3G06800_001 I 0.771
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.771
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.771
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.771
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.771
Cla014322 Citrullus lanatus Cla014322 I 0.771
gene12119-v1.0-hybrid Fragaria vesca gene12119-v1.0-hybrid I 0.771
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.766
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.766
Cla022499 Citrullus lanatus Cla022499 I 0.750
Ca_21060 Cicer arietinum Ca_21060 I 0.750
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.750
Pm002166 Prunus mume Pm002166 I 0.750
MDP0000132226 Malus domestica MDP0000132226 N 0.750
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.750
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.750
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.750
MDP0000209705 Malus domestica MDP0000209705 I 0.750
mgf015964m Mimulus guttatus mgf015964m I 0.750
Ca_01491 Cicer arietinum Ca_01491 I 0.750
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.750
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.750
Eucgr.F02145 Eucalyptus grandis Eucgr.F02145 I 0.750
Eucgr.F02141 Eucalyptus grandis Eucgr.F02141 I 0.750
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.750
PGSC0003DMG401006771 Solanum tuberosum PGSC0003DMG401006771 I 0.750
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.750
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.745
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.745
OB11G21480 Oryza brachyantha OB11G21480 I 0.743
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I 0.732
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.729
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.729
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.729
MDP0000233948 Malus domestica MDP0000233948 I 0.729
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.729
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.729
Ca_12416 Cicer arietinum Ca_12416 I 0.729
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.729
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.729
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.729
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.729
OS03G0186600 Oryza sativa OS03G0186600 I 0.729
Si037358m.g Setaria italica Si037358m.g I 0.729
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.729
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.729
OBART03G06320 Oryza barthii OBART03G06320 I 0.729
GLYMA02G33040 Glycine max GLYMA02G33040 I 0.729
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.729
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.729
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.729
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.729
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.729
TCM_000992 Theobroma cacao TCM_000992 I 0.729
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.729
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.729
Pm022002 Prunus mume Pm022002 I 0.729
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.723
Eucgr.K00198 Eucalyptus grandis Eucgr.K00198 I 0.721
GLYMA15G06302 Glycine max GLYMA15G06302 I 0.708
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.708
F775_26069 Aegilops tauschii F775_26069 I 0.708
GLYMA15G06314 Glycine max GLYMA15G06314 I 0.708
Ca_19854 Cicer arietinum Ca_19854 I 0.708
A1YJE4_HORVD Hordeum vulgare A1YJE4_HORVD D 0.708
MDP0000144516 Malus domestica MDP0000144516 I 0.708
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.708
LPERR02G27330 Leersia perrieri LPERR02G27330 I 0.708
GRMZM2G370777 Zea mays GRMZM2G370777 I 0.708
BRADI3G58220 Brachypodium distachyon BRADI3G58220 I 0.708
GRMZM2G046885 Zea mays GRMZM2G046885 I 0.708
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.708
Bra008802 Brassica rapa Bra008802 I 0.708
SapurV1A.0463s0130 Salix purpurea SapurV1A.0463s0130 I 0.708
Bo9g103660 Brassica oleracea Bo9g103660 I 0.708
PK20651.1 Cannabis sativa PK20651.1 I 0.708
AMTR_s00053p00228660 Amborella trichopoda AMTR_s00053p00228660 I 0.708
SapurV1A.0228s0130 Salix purpurea SapurV1A.0228s0130 I 0.708
SapurV1A.0187s0010 Salix purpurea SapurV1A.0187s0010 I 0.708
Bra029155 Brassica rapa Bra029155 I 0.708
MDP0000135652 Malus domestica MDP0000135652 I 0.708
Pavir.J13837 Panicum virgatum Pavir.J13837 I 0.708
Bra028282 Brassica rapa Bra028282 I 0.708
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708
POPTR_0007s03290 Populus trichocarpa POPTR_0007s03290 I 0.708
Eucgr.I00556 Eucalyptus grandis Eucgr.I00556 I 0.708
POPTR_0007s03270 Populus trichocarpa POPTR_0007s03270 I 0.708
PGSC0003DMG400033570 Solanum tuberosum PGSC0003DMG400033570 I 0.708
Traes_6AL_A93C6F2FC Triticum aestivum Traes_6AL_A93C6F2FC I 0.708
Eucgr.F02146 Eucalyptus grandis Eucgr.F02146 I 0.708
PRUPE_ppa022274mg Prunus persica PRUPE_ppa022274mg I 0.708
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.708
Solyc01g105800.2 Solanum lycopersicum Solyc01g105800.2 I 0.708
Si017524m.g Setaria italica Si017524m.g I 0.708
Sb04g033930 Sorghum bicolor Sb04g033930 I 0.708
Bostr.20505s0007 Boechera stricta Bostr.20505s0007 I 0.708
MTR_1g053070 Medicago truncatula MTR_1g053070 I 0.708
Traes_6DL_D8C9E421C Triticum aestivum Traes_6DL_D8C9E421C I 0.708
e_gw1.209.37.1 Physcomitrella patens e_gw1.209.37.1 I 0.708
VIT_03s0017g00360 Vitis vinifera VIT_03s0017g00360 I 0.708
Gorai.013G055700 Gossypium raimondii Gorai.013G055700 I 0.708
e_gw1.171.4.1 Physcomitrella patens e_gw1.171.4.1 I 0.708
TCM_007378 Theobroma cacao TCM_007378 I 0.708
Aquca_009_00337 Aquilegia coerulea Aquca_009_00337 I 0.708
Gorai.008G017200 Gossypium raimondii Gorai.008G017200 I 0.708
ORGLA02G0288600 Oryza glaberrima ORGLA02G0288600 I 0.708
mgf018870m Mimulus guttatus mgf018870m I 0.708
29838.m001690 Ricinus communis 29838.m001690 I 0.708
mgf023192m Mimulus guttatus mgf023192m I 0.708
mgf025830m Mimulus guttatus mgf025830m I 0.708
PK02524.1 Cannabis sativa PK02524.1 I 0.705
PK10580.1 Cannabis sativa PK10580.1 I 0.704