MDP0000378412 (Malus domestica)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 MDP0000378412 T258754_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.729 0.729
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.729 0.729
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000378412 MADS box 13 60

Links

Other MADS box family TFs
Other Malus domestica TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000259294 Malus domestica MDP0000259294 I 0.979
MDP0000527190 Malus domestica MDP0000527190 I 0.958
MDP0000322567 Malus domestica MDP0000322567 I 0.938
PRUPE_ppb017585mg Prunus persica PRUPE_ppb017585mg I 0.917
Pm004419 Prunus mume Pm004419 I 0.917
Pm004417 Prunus mume Pm004417 I 0.896
PRUPE_ppa011123mg Prunus persica PRUPE_ppa011123mg I 0.896
PRUPE_ppa010822mg Prunus persica PRUPE_ppa010822mg I 0.875
PRUPE_ppa010758mg Prunus persica PRUPE_ppa010758mg I 0.875
MDP0000255146 Malus domestica MDP0000255146 I 0.875
PRUPE_ppa010714mg Prunus persica PRUPE_ppa010714mg I 0.875
Pm004416 Prunus mume Pm004416 I 0.875
Pm004420 Prunus mume Pm004420 I 0.875
PRUPE_ppa018667mg Prunus persica PRUPE_ppa018667mg I 0.854
Pm004418 Prunus mume Pm004418 I 0.854
Pm004415 Prunus mume Pm004415 I 0.833
MDP0000277582 Malus domestica MDP0000277582 N 0.833
MDP0000143531 Malus domestica MDP0000143531 N 0.812
AGL24 Vitis vinifera VIT_18s0001g07460 I 0.792
MDP0000311107 Malus domestica MDP0000311107 N 0.792
POPTR_0002s10570 Populus trichocarpa POPTR_0002s10570 I 0.792
SapurV1A.0004s1140 Salix purpurea SapurV1A.0004s1140 I 0.792
TCM_034501 Theobroma cacao TCM_034501 I 0.771
Solyc11g010570.1 Solanum lycopersicum Solyc11g010570.1 I 0.771
Gorai.002G142700 Gossypium raimondii Gorai.002G142700 I 0.771
orange1.1g034384m.g Citrus sinensis orange1.1g034384m.g I 0.771
Gorai.010G035000 Gossypium raimondii Gorai.010G035000 I 0.771
PGSC0003DMG400016203 Solanum tuberosum PGSC0003DMG400016203 I 0.771
Ciclev10026457m.g Citrus clementina Ciclev10026457m.g I 0.771
cassava31070.valid.m1 Manihot esculenta cassava31070.valid.m1 I 0.771
cassava31071.valid.m1 Manihot esculenta cassava31071.valid.m1 I 0.771
SVP Arabidopsis thaliana AT2G22540 D 0.766
GLYMA12G17721 Glycine max GLYMA12G17721 I 0.766
orange1.1g027190m.g Citrus sinensis orange1.1g027190m.g I 0.766
orange1.1g040972m.g Citrus sinensis orange1.1g040972m.g I 0.766
gene12120-v1.0-hybrid Fragaria vesca gene12120-v1.0-hybrid I 0.766
Aquca_015_00177 Aquilegia coerulea Aquca_015_00177 I 0.750
cassava42879.valid.m1 Manihot esculenta cassava42879.valid.m1 I 0.750
TCM_000992 Theobroma cacao TCM_000992 I 0.750
BGIOSGA011317 Oryza indica BGIOSGA011317 I 0.750
GLYMA01G02880 Glycine max GLYMA01G02880 I 0.750
Ca_12416 Cicer arietinum Ca_12416 I 0.750
Gorai.008G092300 Gossypium raimondii Gorai.008G092300 I 0.750
cassava1567.valid.m1 Manihot esculenta cassava1567.valid.m1 I 0.750
Eucgr.F00420 Eucalyptus grandis Eucgr.F00420 I 0.750
GLYMA06G10020 Glycine max GLYMA06G10020 I 0.750
GRMZM2G059102 Zea mays GRMZM2G059102 I 0.750
Bo1g039080 Brassica oleracea Bo1g039080 I 0.750
MDP0000132226 Malus domestica MDP0000132226 N 0.750
GLYMA04G10015 Glycine max GLYMA04G10015 I 0.750
Si037358m.g Setaria italica Si037358m.g I 0.750
Sb01g044810 Sorghum bicolor Sb01g044810 I 0.750
Thhalv10026757m.g Eutrema salsugineum Thhalv10026757m.g I 0.750
MTR_5g066180 Medicago truncatula MTR_5g066180 I 0.750
PGSC0003DMG400009363 Solanum tuberosum PGSC0003DMG400009363 I 0.750
ORUFI03G06210 Oryza rufipogon ORUFI03G06210 I 0.750
OS03G0186600 Oryza sativa OS03G0186600 I 0.750
OBART03G06320 Oryza barthii OBART03G06320 I 0.750
OPUNC03G06100 Oryza punctata OPUNC03G06100 I 0.750
Bra013812 Brassica rapa Bra013812 I 0.750
OGLUM03G06330 Oryza glumaepatula OGLUM03G06330 I 0.750
Pavir.Ia04527 Panicum virgatum Pavir.Ia04527 I 0.750
OMERI03G06190 Oryza meridionalis OMERI03G06190 I 0.750
ONIVA02G06550 Oryza nivara ONIVA02G06550 I 0.750
ORGLA03G0061100 Oryza glaberrima ORGLA03G0061100 I 0.750
OB11G21480 Oryza brachyantha OB11G21480 I 0.743
Ciclev10029776m.g Citrus clementina Ciclev10029776m.g I 0.729
Carubv10023941m.g Capsella rubella Carubv10023941m.g I 0.729
Cagra.3821s0004 Capsella grandiflora Cagra.3821s0004 I 0.729
Carubv10015972m.g Capsella rubella Carubv10015972m.g I 0.729
Cagra.1080s0011 Capsella grandiflora Cagra.1080s0011 I 0.729
Bostr.19427s0024 Boechera stricta Bostr.19427s0024 I 0.729
Bostr.13083s0004 Boechera stricta Bostr.13083s0004 I 0.729
GLYMA02G04710 Glycine max GLYMA02G04710 I 0.729
Pavir.Ib00555 Panicum virgatum Pavir.Ib00555 I 0.729
AGL24 Arabidopsis lyrata fgenesh2_kg.7__1822__AT4G24540.1 I 0.729
SVP Arabidopsis lyrata fgenesh2_kg.4__174__AT2G22540.1 I 0.729
SapurV1A.1777s0020 Salix purpurea SapurV1A.1777s0020 I 0.729
Thhalv10000308m.g Eutrema salsugineum Thhalv10000308m.g I 0.729
ANR1 Arabidopsis thaliana AT2G14210 I 0.729
AGL24 Arabidopsis thaliana AT4G24540 I 0.729
Gorai.005G225500 Gossypium raimondii Gorai.005G225500 I 0.729
GLYMA11G16105 Glycine max GLYMA11G16105 I 0.729
Lus10025719.g Linum usitatissimum Lus10025719.g I 0.729
Lus10035942.g Linum usitatissimum Lus10035942.g I 0.729
MDP0000209705 Malus domestica MDP0000209705 I 0.729
evm.TU.supercontig_55.31 Carica papaya evm.TU.supercontig_55.31 I 0.729
mgf025830m Mimulus guttatus mgf025830m I 0.729
Ca_21060 Cicer arietinum Ca_21060 I 0.729
Ca_01491 Cicer arietinum Ca_01491 I 0.729
mgf023192m Mimulus guttatus mgf023192m I 0.729
Cla022499 Citrullus lanatus Cla022499 I 0.729
Bo7g109590 Brassica oleracea Bo7g109590 I 0.729
GSMUA_Achr10G19290_001 Musa acuminata GSMUA_Achr10G19290_001 I 0.729
LPERR03G05670 Leersia perrieri LPERR03G05670 I 0.729
SVP Vitis vinifera VIT_00s0313g00070 I 0.729
BRADI1G72150 Brachypodium distachyon BRADI1G72150 I 0.729
POPTR_0007s14300 Populus trichocarpa POPTR_0007s14300 I 0.729
Bra038511 Brassica rapa Bra038511 I 0.729
Bra019221 Brassica rapa Bra019221 I 0.729
Traes_4DL_67EFB6303 Triticum aestivum Traes_4DL_67EFB6303 I 0.729
Bo8g101000 Brassica oleracea Bo8g101000 I 0.729
AMTR_s00127p00060060 Amborella trichopoda AMTR_s00127p00060060 I 0.729
Cla014322 Citrullus lanatus Cla014322 I 0.729
F775_26069 Aegilops tauschii F775_26069 I 0.729
mgf015964m Mimulus guttatus mgf015964m I 0.729
cassava26340.m1 Manihot esculenta cassava26340.m1 I 0.729
Cucsa.104010 Cucumis sativus Cucsa.104010 I 0.729
gene03714-v1.0-hybrid Fragaria vesca gene03714-v1.0-hybrid I 0.723
Cagra.2171s0007 Capsella grandiflora Cagra.2171s0007 I 0.708
PRUPE_ppa011063mg Prunus persica PRUPE_ppa011063mg I 0.708
Bra030228 Brassica rapa Bra030228 I 0.708
Cucsa.160640 Cucumis sativus Cucsa.160640 I 0.708
Solyc01g087990.2 Solanum lycopersicum Solyc01g087990.2 I 0.708
MTR_5g032150 Medicago truncatula MTR_5g032150 I 0.708
MTR_5g032520 Medicago truncatula MTR_5g032520 I 0.708
SapurV1A.0019s1110 Salix purpurea SapurV1A.0019s1110 I 0.708
SapurV1A.1370s0060 Salix purpurea SapurV1A.1370s0060 I 0.708
PK08595.1 Cannabis sativa PK08595.1 I 0.708
LjT38P01.180.nd Lotus japonicus LjT38P01.180.nd I 0.708
Thhalv10022995m.g Eutrema salsugineum Thhalv10022995m.g I 0.708
Bostr.7867s0261 Boechera stricta Bostr.7867s0261 I 0.708
Cucsa.331900 Cucumis sativus Cucsa.331900 I 0.708
SapurV1A.2345s0030 Salix purpurea SapurV1A.2345s0030 I 0.708
Bo7g025330 Brassica oleracea Bo7g025330 I 0.708
Traes_4BL_410DEBFD3 Triticum aestivum Traes_4BL_410DEBFD3 I 0.708
evm.TU.supercontig_21.11 Carica papaya evm.TU.supercontig_21.11 I 0.708
29804.m001536 Ricinus communis 29804.m001536 I 0.708
Lus10005325.g Linum usitatissimum Lus10005325.g I 0.708
Pm002166 Prunus mume Pm002166 I 0.708
Gorai.008G018100 Gossypium raimondii Gorai.008G018100 I 0.708
Bo4g149800 Brassica oleracea Bo4g149800 I 0.708
Carubv10005653m.g Capsella rubella Carubv10005653m.g I 0.708
Lus10039580.g Linum usitatissimum Lus10039580.g I 0.708
gene20808-v1.0-hybrid Fragaria vesca gene20808-v1.0-hybrid I 0.708
VIT_15s0107g00120 Vitis vinifera VIT_15s0107g00120 I 0.708
MDP0000233948 Malus domestica MDP0000233948 I 0.708
cassava33801.m1 Manihot esculenta cassava33801.m1 I 0.708
ANR1 Vitis vinifera VIT_18s0001g07900 I 0.708
PK10580.1 Cannabis sativa PK10580.1 I 0.704
gene05027-v1.0-hybrid Fragaria vesca gene05027-v1.0-hybrid I 0.702
gene03748-v1.0-hybrid Fragaria vesca gene03748-v1.0-hybrid I 0.702
gene05180-v1.0-hybrid Fragaria vesca gene05180-v1.0-hybrid I 0.702