LAF1 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT4G25560 T266498_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
LAF1 is a R2R3-MYB transcription factor and positive regulator of the phyA photoresponse. Interaction of LAF1 with HFR1 stabilize the proteins against ubiquitination by COP1(AT2G32950) and subsequent degrations. Mutants have an elongated hypocotyl specifically under far-red light but retain wild-type responses to other light wavelengths.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.668 0.688
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.668 0.688
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.668 0.688
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.665 0.656
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.665 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G25560.1 Myb 12 59
AT4G25560.1 Myb 65 110
AT4G25560.2 Myb 2 44

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.7867s0367 Boechera stricta Bostr.7867s0367 I 0.888
Cagra.23907s0010 Capsella grandiflora Cagra.23907s0010 I 0.888
Carubv10007732m.g Capsella rubella Carubv10007732m.g I 0.888
AtMYB18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7001401 I 0.870
Bra019154 Brassica rapa Bra019154 N 0.869
Bo1g040300 Brassica oleracea Bo1g040300 N 0.856
Bo7g110400 Brassica oleracea Bo7g110400 N 0.854
Bra013900 Brassica rapa Bra013900 N 0.840
Bo3g023270 Brassica oleracea Bo3g023270 I 0.831
Bra029129 Brassica rapa Bra029129 I 0.831
Bostr.7305s0041 Boechera stricta Bostr.7305s0041 I 0.831
Thhalv10014388m.g Eutrema salsugineum Thhalv10014388m.g I 0.822
AtMYB19 Arabidopsis thaliana AT5G52260 I 0.814
AtMYB19 Arabidopsis lyrata fgenesh2_kg.8__1111__AT5G52260.1 I 0.814
Thhalv10026022m.g Eutrema salsugineum Thhalv10026022m.g N 0.794
Carubv10027541m.g Capsella rubella Carubv10027541m.g I 0.776
Cagra.0094s0035 Capsella grandiflora Cagra.0094s0035 I 0.776
Aquca_034_00423 Aquilegia coerulea Aquca_034_00423 I 0.738
Pavir.Ga00879 Panicum virgatum Pavir.Ga00879 I 0.736
Si012304m.g Setaria italica Si012304m.g I 0.736
Pavir.Gb00734 Panicum virgatum Pavir.Gb00734 I 0.736
MLOC_73614 Hordeum vulgare MLOC_73614 I 0.735
Traes_2BL_35241DE8D Triticum aestivum Traes_2BL_35241DE8D I 0.735
Traes_2BL_7CEC6A8D7 Triticum aestivum Traes_2BL_7CEC6A8D7 I 0.735
Traes_2AL_2D4100475 Triticum aestivum Traes_2AL_2D4100475 I 0.735
TRIUR3_15020 Triticum urartu TRIUR3_15020 I 0.735
MTR_1g100667 Medicago truncatula MTR_1g100667 I 0.734
TCM_015157 Theobroma cacao TCM_015157 I 0.729
GLYMA10G38110 Glycine max GLYMA10G38110 I 0.729
GLYMA20G29710 Glycine max GLYMA20G29710 I 0.729
ONIVA04G17950 Oryza nivara ONIVA04G17950 I 0.727
ORUFI04G21270 Oryza rufipogon ORUFI04G21270 I 0.727
OS04G0532800 Oryza sativa OS04G0532800 I 0.727
ORGLA10G0151700 Oryza glaberrima ORGLA10G0151700 I 0.727
ORGLA04G0168700 Oryza glaberrima ORGLA04G0168700 I 0.727
OMERI04G16730 Oryza meridionalis OMERI04G16730 I 0.727
OPUNC04G17450 Oryza punctata OPUNC04G17450 I 0.727
OGLUM04G19590 Oryza glumaepatula OGLUM04G19590 I 0.727
OBART04G19730 Oryza barthii OBART04G19730 I 0.727
BGIOSGA016820 Oryza indica BGIOSGA016820 I 0.727
GLYMA16G31280 Glycine max GLYMA16G31280 I 0.722
chr5.CM0148.380.nc Lotus japonicus chr5.CM0148.380.nc I 0.722
Ca_19758 Cicer arietinum Ca_19758 I 0.722
PK18276.1 Cannabis sativa PK18276.1 I 0.720
Gorai.007G011100 Gossypium raimondii Gorai.007G011100 I 0.718
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.717
Traes_2AL_AF9357B4C Triticum aestivum Traes_2AL_AF9357B4C N 0.715
Traes_2AL_962A9D448 Triticum aestivum Traes_2AL_962A9D448 I 0.714
BRADI5G16672 Brachypodium distachyon BRADI5G16672 I 0.714
Traes_2BL_604FE7639 Triticum aestivum Traes_2BL_604FE7639 I 0.714
Traes_2BL_03F3475CD Triticum aestivum Traes_2BL_03F3475CD I 0.714
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I 0.714
GLYMA09G25655 Glycine max GLYMA09G25655 I 0.712
Lus10005739.g Linum usitatissimum Lus10005739.g I 0.710
Pavir.Ab02417 Panicum virgatum Pavir.Ab02417 I 0.709
Traes_6AL_D10CBA40D Triticum aestivum Traes_6AL_D10CBA40D I 0.706
Traes_6DL_A014E9069 Triticum aestivum Traes_6DL_A014E9069 I 0.706
F775_08647 Aegilops tauschii F775_08647 I 0.706
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.706
TRIUR3_32691 Triticum urartu TRIUR3_32691 I 0.706
Traes_6BL_CE61B9510 Triticum aestivum Traes_6BL_CE61B9510 I 0.706
LPERR04G16000 Leersia perrieri LPERR04G16000 I 0.706
GRMZM2G170049 Zea mays GRMZM2G170049 I 0.706
Cla006288 Citrullus lanatus Cla006288 I 0.705
Lus10039213.g Linum usitatissimum Lus10039213.g I 0.705
Lus10027458.g Linum usitatissimum Lus10027458.g I 0.705
POPTR_0015s13190 Populus trichocarpa POPTR_0015s13190 I 0.705
mgf024114m Mimulus guttatus mgf024114m I 0.704
BRADI3G49970 Brachypodium distachyon BRADI3G49970 I 0.701
OB04G26810 Oryza brachyantha OB04G26810 I 0.700
PRUPE_ppa019729mg Prunus persica PRUPE_ppa019729mg I 0.700
Si017947m.g Setaria italica Si017947m.g I 0.700
Pm019344 Prunus mume Pm019344 I 0.700
Eucgr.K00250 Eucalyptus grandis Eucgr.K00250 I 0.699
Sb06g023610 Sorghum bicolor Sb06g023610 I 0.699
gene13281-v1.0-hybrid Fragaria vesca gene13281-v1.0-hybrid I 0.698
evm.TU.supercontig_107.47 Carica papaya evm.TU.supercontig_107.47 I 0.698
MDP0000152575 Malus domestica MDP0000152575 I 0.696
cassava26284.m1 Manihot esculenta cassava26284.m1 I 0.693
GRMZM2G496770 Zea mays GRMZM2G496770 I 0.693
Lus10005740.g Linum usitatissimum Lus10005740.g I 0.692
BGIOSGA008698 Oryza indica BGIOSGA008698 I 0.690
Ciclev10006897m.g Citrus clementina Ciclev10006897m.g N 0.690
OPUNC02G23410 Oryza punctata OPUNC02G23410 I 0.690
OB02G32950 Oryza brachyantha OB02G32950 I 0.690
orange1.1g045400m.g Citrus sinensis orange1.1g045400m.g I 0.690
OBART02G25570 Oryza barthii OBART02G25570 I 0.690
OGLUM02G26100 Oryza glumaepatula OGLUM02G26100 I 0.690
F775_52175 Aegilops tauschii F775_52175 N 0.690
OMERI02G25080 Oryza meridionalis OMERI02G25080 I 0.690
ONIVA02G28010 Oryza nivara ONIVA02G28010 I 0.690
Cagra.2337s0007 Capsella grandiflora Cagra.2337s0007 I 0.688
Carubv10018592m.g Capsella rubella Carubv10018592m.g I 0.688
SapurV1A.0754s0180 Salix purpurea SapurV1A.0754s0180 I 0.688
GSMUA_Achr8G11340_001 Musa acuminata GSMUA_Achr8G11340_001 I 0.688
Thhalv10010657m.g Eutrema salsugineum Thhalv10010657m.g I 0.687
Bostr.18473s0062 Boechera stricta Bostr.18473s0062 I 0.687
PGSC0003DMG400014291 Solanum tuberosum PGSC0003DMG400014291 I 0.686
Cucsa.107740 Cucumis sativus Cucsa.107740 I 0.686
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.684
SapurV1A.1253s0100 Salix purpurea SapurV1A.1253s0100 I 0.684
POPTR_0012s13260 Populus trichocarpa POPTR_0012s13260 I 0.684
Sb04g033680 Sorghum bicolor Sb04g033680 I 0.683
Bra035097 Brassica rapa Bra035097 I 0.683
MDP0000896053 Malus domestica MDP0000896053 I 0.681
ORUFI02G26980 Oryza rufipogon ORUFI02G26980 I 0.681
Bo8g077360 Brassica oleracea Bo8g077360 I 0.680
Bra018027 Brassica rapa Bra018027 I 0.680
Cucsa.313950 Cucumis sativus Cucsa.313950 I 0.679
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.678
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I 0.677
Eucgr.A00996 Eucalyptus grandis Eucgr.A00996 I 0.676
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.674
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.674
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.674
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.674
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.672
PDK_20s1606731g001 Phoenix dactylifera PDK_20s1606731g001 I 0.672
AtMYB45 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001377 I 0.672
SELMODRAFT_437219 Selaginella moellendorffii SELMODRAFT_437219 I 0.671
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.670
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.670
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.670
F775_00835 Aegilops tauschii F775_00835 I 0.670
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.668
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.668
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.668
mgf024107m Mimulus guttatus mgf024107m I 0.668
chr1.CM0206.990.nd Lotus japonicus chr1.CM0206.990.nd I 0.668
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.668
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.668
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.668
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.668
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.668
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.668
Pavir.Ab02021 Panicum virgatum Pavir.Ab02021 I 0.668
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.668
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.668
Eucgr.K00555 Eucalyptus grandis Eucgr.K00555 I 0.668
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.668
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.668
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.668
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.668
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.668
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.668
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.668
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.668
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.668
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.668
TCM_004965 Theobroma cacao TCM_004965 I 0.668
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.668
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.668
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.668
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.668
GLYMA03G38660 Glycine max GLYMA03G38660 I 0.668
GLYMA20G22230 Glycine max GLYMA20G22230 I 0.668
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.668
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.668
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.668
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.668
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.668
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.668
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.668
Bo7g095130 Brassica oleracea Bo7g095130 I 0.668
Bo2g156300 Brassica oleracea Bo2g156300 I 0.668
MYB86 Arabidopsis thaliana AT5G26660 I 0.668
MYB55 Arabidopsis thaliana AT4G01680 D 0.668
Bo9g004210 Brassica oleracea Bo9g004210 I 0.668
Bo9g010860 Brassica oleracea Bo9g010860 I 0.668
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.668
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.668
Bra036588 Brassica rapa Bra036588 I 0.668
Bra036317 Brassica rapa Bra036317 I 0.668
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.668
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.668
Ca_01055 Cicer arietinum Ca_01055 I 0.668
Ca_03589 Cicer arietinum Ca_03589 I 0.668
Si017851m.g Setaria italica Si017851m.g I 0.668
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.668
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.668
Cla001724 Citrullus lanatus Cla001724 I 0.668
Ca_03564 Cicer arietinum Ca_03564 I 0.668
Sb04g024000 Sorghum bicolor Sb04g024000 I 0.668
Ca_01072 Cicer arietinum Ca_01072 I 0.668
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.667
AtMYB45 Arabidopsis thaliana AT3G48920 I 0.667
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.667
Si030152m.g Setaria italica Si030152m.g I 0.667
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.667
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.667
OBART07G15150 Oryza barthii OBART07G15150 I 0.667
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.667
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.667
OS07G0497500 Oryza sativa OS07G0497500 I 0.667
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.667
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.667
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.667
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.667
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.667
Solyc01g102340.2 Solanum lycopersicum Solyc01g102340.2 I 0.666
PGSC0003DMG400018279 Solanum tuberosum PGSC0003DMG400018279 I 0.666
e_gw1.211.99.1 Physcomitrella patens e_gw1.211.99.1 I 0.666
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.665
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.665
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.665
MYB58 Arabidopsis thaliana AT1G16490 D 0.665
MYB26 Arabidopsis thaliana AT3G13890 I 0.665
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.665
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.665
AMTR_s00036p00107460 Amborella trichopoda AMTR_s00036p00107460 I 0.665
cassava21326.m1 Manihot esculenta cassava21326.m1 I 0.664
gw1.149.61.1 Physcomitrella patens gw1.149.61.1 I 0.664
Cucsa.127860 Cucumis sativus Cucsa.127860 I 0.663
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.663
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.663
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.663
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.663
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.663
F775_28584 Aegilops tauschii F775_28584 I 0.663
gene27001-v1.0-hybrid Fragaria vesca gene27001-v1.0-hybrid I 0.662
Eucgr.A02796 Eucalyptus grandis Eucgr.A02796 I 0.662
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.662
Bo6g122640 Brassica oleracea Bo6g122640 I 0.662
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.662
TRIUR3_15022 Triticum urartu TRIUR3_15022 N 0.661