CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold_201356.1
(
Arabidopsis lyrata
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
scaffold_201356.1
T279372_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.814
0.882
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_201356.1
Myb
10
57
KGTWTAEEDILLRKCIDKYGEGKWHQVPLRAGLNRCGKGCRLRWLNYL
scaffold_201356.1
Myb
63
108
RGNFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHF
Links
Other
Myb/SANT
family TFs
Other
Arabidopsis lyrata
TFs
117 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo6g099880
Brassica oleracea
Bo6g099880
I
0.816
ATMYB90
Arabidopsis lyrata
scaffold_201358.1
I
0.816
Thhalv10019041m.g
Eutrema salsugineum
Thhalv10019041m.g
I
0.816
MYB114
Arabidopsis thaliana
AT1G66380
I
0.816
MYB113
Arabidopsis thaliana
AT1G66370
D
0.814
Carubv10020856m.g
Capsella rubella
Carubv10020856m.g
I
0.814
Cagra.2400s0001
Capsella grandiflora
Cagra.2400s0001
I
0.814
MYB113
Arabidopsis lyrata
fgenesh2_kg.2__869__AT1G66370.1
I
0.813
Bostr.26959s0279
Boechera stricta
Bostr.26959s0279
I
0.813
Bra004162
Brassica rapa
Bra004162
I
0.813
Bo6g100940
Brassica oleracea
Bo6g100940
I
0.813
PAP1
Arabidopsis lyrata
fgenesh2_kg.1__4777__AT1G56650.1
I
0.811
Bo00835s060
Brassica oleracea
Bo00835s060
I
0.805
Bra039763
Brassica rapa
Bra039763
I
0.805
Bra001917
Brassica rapa
Bra001917
I
0.805
MYB90
Arabidopsis thaliana
AT1G66390
I
0.798
fgenesh1_pg.C_scaffold_2000950
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000950
I
0.797
MYB75
Arabidopsis thaliana
AT1G56650
I
0.794
scaffold_201357.1
Arabidopsis lyrata
scaffold_201357.1
I
0.793
Cagra.2629s0007
Capsella grandiflora
Cagra.2629s0007
I
0.792
Carubv10020888m.g
Capsella rubella
Carubv10020888m.g
I
0.792
Solyc10g086270.1
Solanum lycopersicum
Solyc10g086270.1
I
0.787
Solyc10g086250.1
Solanum lycopersicum
Solyc10g086250.1
I
0.784
Solyc10g086290.1
Solanum lycopersicum
Solyc10g086290.1
I
0.782
Cagra.0463s0008
Capsella grandiflora
Cagra.0463s0008
I
0.775
Cagra.0463s0007
Capsella grandiflora
Cagra.0463s0007
I
0.773
Solyc10g086260.1
Solanum lycopersicum
Solyc10g086260.1
I
0.770
Gorai.001G087400
Gossypium raimondii
Gorai.001G087400
I
0.767
TCM_019192
Theobroma cacao
TCM_019192
I
0.767
Gorai.001G087200
Gossypium raimondii
Gorai.001G087200
I
0.767
PK05760.1
Cannabis sativa
PK05760.1
I
0.762
Ciclev10013455m.g
Citrus clementina
Ciclev10013455m.g
I
0.762
Pm029445
Prunus mume
Pm029445
I
0.752
VIT_02s0033g00390
Vitis vinifera
VIT_02s0033g00390
I
0.750
VIT_02s0033g00410
Vitis vinifera
VIT_02s0033g00410
I
0.750
VIT_02s0033g00450
Vitis vinifera
VIT_02s0033g00450
I
0.750
PK17827.1
Cannabis sativa
PK17827.1
I
0.746
evm.TU.supercontig_2742.1
Carica papaya
evm.TU.supercontig_2742.1
I
0.737
evm.TU.supercontig_116.38
Carica papaya
evm.TU.supercontig_116.38
I
0.737
VIT_14s0006g01290
Vitis vinifera
VIT_14s0006g01290
I
0.735
Cagra.0463s0006
Capsella grandiflora
Cagra.0463s0006
I
0.734
VIT_02s0033g00400
Vitis vinifera
VIT_02s0033g00400
I
0.732
mgf019317m
Mimulus guttatus
mgf019317m
I
0.730
MTR_5g079290
Medicago truncatula
MTR_5g079290
I
0.730
27763.m000042
Ricinus communis
27763.m000042
I
0.729
Pm029442
Prunus mume
Pm029442
I
0.725
MTR_5g078950
Medicago truncatula
MTR_5g078950
I
0.724
MTR_5g079220
Medicago truncatula
MTR_5g079220
I
0.720
Pm029440
Prunus mume
Pm029440
I
0.719
PRUPE_ppa026640mg
Prunus persica
PRUPE_ppa026640mg
I
0.716
MTR_5g078800
Medicago truncatula
MTR_5g078800
I
0.715
MTR_0001s0360
Medicago truncatula
MTR_0001s0360
I
0.715
MTR_8g060940
Medicago truncatula
MTR_8g060940
I
0.714
MTR_5g078860
Medicago truncatula
MTR_5g078860
I
0.714
Lus10042522.g
Linum usitatissimum
Lus10042522.g
I
0.712
MTR_5g078910
Medicago truncatula
MTR_5g078910
I
0.712
VIT_02s0033g00430
Vitis vinifera
VIT_02s0033g00430
I
0.711
MTR_5g078930
Medicago truncatula
MTR_5g078930
I
0.710
gene31413-v1.0-hybrid
Fragaria vesca
gene31413-v1.0-hybrid
I
0.703
GLYMA09G36966
Glycine max
GLYMA09G36966
I
0.703
Lus10009129.g
Linum usitatissimum
Lus10009129.g
I
0.701
Lus10028514.g
Linum usitatissimum
Lus10028514.g
I
0.701
MDP0000192051
Malus domestica
MDP0000192051
I
0.700
chr1.CM0141.350.nd
Lotus japonicus
chr1.CM0141.350.nd
I
0.700
TCM_026054
Theobroma cacao
TCM_026054
I
0.700
Eucgr.H04157
Eucalyptus grandis
Eucgr.H04157
I
0.698
Lus10009130.g
Linum usitatissimum
Lus10009130.g
I
0.697
Lus10028513.g
Linum usitatissimum
Lus10028513.g
I
0.697
Aquca_047_00006
Aquilegia coerulea
Aquca_047_00006
I
0.696
MTR_5g079120
Medicago truncatula
MTR_5g079120
I
0.696
VIT_04s0008g01810
Vitis vinifera
VIT_04s0008g01810
I
0.694
Ca_22078
Cicer arietinum
Ca_22078
I
0.694
MTR_7g017260
Medicago truncatula
MTR_7g017260
I
0.693
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.692
Gorai.007G268800
Gossypium raimondii
Gorai.007G268800
I
0.692
chr1.LjT44L17.240.nd
Lotus japonicus
chr1.LjT44L17.240.nd
I
0.691
GLYMA18G41520
Glycine max
GLYMA18G41520
I
0.691
MTR_0197s0010
Medicago truncatula
MTR_0197s0010
I
0.691
Ca_19630
Cicer arietinum
Ca_19630
I
0.691
GLYMA18G49690
Glycine max
GLYMA18G49690
I
0.690
Aquca_015_00088
Aquilegia coerulea
Aquca_015_00088
I
0.690
Gorai.013G118300
Gossypium raimondii
Gorai.013G118300
I
0.690
Gorai.001G020400
Gossypium raimondii
Gorai.001G020400
I
0.689
Si038905m.g
Setaria italica
Si038905m.g
I
0.688
30128.m008730
Ricinus communis
30128.m008730
I
0.688
GLYMA07G16980
Glycine max
GLYMA07G16980
I
0.687
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.685
Eucgr.F02842
Eucalyptus grandis
Eucgr.F02842
I
0.684
PRUPE_ppa023812mg
Prunus persica
PRUPE_ppa023812mg
I
0.684
PRUPE_ppa016711mg
Prunus persica
PRUPE_ppa016711mg
I
0.682
VIT_14s0006g01280
Vitis vinifera
VIT_14s0006g01280
I
0.682
ORGLA03G0196700
Oryza glaberrima
ORGLA03G0196700
I
0.679
MTR_0247s0040
Medicago truncatula
MTR_0247s0040
I
0.679
Pm005571
Prunus mume
Pm005571
I
0.678
Ca_03154
Cicer arietinum
Ca_03154
I
0.676
TCM_037559
Theobroma cacao
TCM_037559
I
0.676
PRUPE_ppa024074mg
Prunus persica
PRUPE_ppa024074mg
I
0.675
Pm027047
Prunus mume
Pm027047
I
0.675
PRUPE_ppa010069mg
Prunus persica
PRUPE_ppa010069mg
I
0.674
VIT_11s0016g01310
Vitis vinifera
VIT_11s0016g01310
I
0.674
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.673
Eucgr.C00722
Eucalyptus grandis
Eucgr.C00722
I
0.672
Sb01g032770
Sorghum bicolor
Sb01g032770
I
0.671
GLYMA07G04240
Glycine max
GLYMA07G04240
I
0.669
VIT_14s0006g01340
Vitis vinifera
VIT_14s0006g01340
I
0.669
GLYMA16G00931
Glycine max
GLYMA16G00931
I
0.669
Gorai.001G020600
Gossypium raimondii
Gorai.001G020600
I
0.669
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.669
Cucsa.277570
Cucumis sativus
Cucsa.277570
I
0.668
evm.TU.contig_42663.2
Carica papaya
evm.TU.contig_42663.2
I
0.667
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.667
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.667
VIT_11s0016g01320
Vitis vinifera
VIT_11s0016g01320
I
0.665
evm.TU.supercontig_126.33
Carica papaya
evm.TU.supercontig_126.33
I
0.664
GLYMA10G35061
Glycine max
GLYMA10G35061
I
0.661
TCM_010778
Theobroma cacao
TCM_010778
I
0.661
LjSGA_029658.1
Lotus japonicus
LjSGA_029658.1
I
0.661