CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cagra.0463s0007
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.0463s0007
T285962_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB113
M07026_2.00
Arabidopsis thaliana
VTAACKRAHTH
DADTYMGTTAB
Dap-seq
OMalley et al.(2016)
MYB113_col_a
0.794
0.806
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0463s0007.1.p
Myb
12
59
RGAWTAEEDSLSRECVDKYGEGKWHLIPLRTGLNRCRKSCRLRWLNYL
Cagra.0463s0007.1.p
Myb
65
110
RGRLNSDEIDLIIRLHNLLGNRWSLIAGRIPGRTANDIKNYWNTHF
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
137 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.26959s0279
Boechera stricta
Bostr.26959s0279
I
0.850
ATMYB90
Arabidopsis lyrata
scaffold_201358.1
I
0.847
Bra001917
Brassica rapa
Bra001917
I
0.841
MYB114
Arabidopsis thaliana
AT1G66380
I
0.831
Thhalv10019041m.g
Eutrema salsugineum
Thhalv10019041m.g
I
0.831
MYB90
Arabidopsis thaliana
AT1G66390
I
0.829
PAP1
Arabidopsis lyrata
fgenesh2_kg.1__4777__AT1G56650.1
I
0.827
Bo6g100940
Brassica oleracea
Bo6g100940
I
0.825
Bo6g099880
Brassica oleracea
Bo6g099880
I
0.822
Bra004162
Brassica rapa
Bra004162
I
0.822
Bra039763
Brassica rapa
Bra039763
I
0.820
Bo00835s060
Brassica oleracea
Bo00835s060
I
0.820
MYB113
Arabidopsis lyrata
fgenesh2_kg.2__869__AT1G66370.1
I
0.818
Carubv10020856m.g
Capsella rubella
Carubv10020856m.g
I
0.814
Cagra.2400s0001
Capsella grandiflora
Cagra.2400s0001
I
0.814
MYB75
Arabidopsis thaliana
AT1G56650
I
0.810
scaffold_201357.1
Arabidopsis lyrata
scaffold_201357.1
I
0.808
PK05760.1
Cannabis sativa
PK05760.1
I
0.807
Cagra.2629s0007
Capsella grandiflora
Cagra.2629s0007
I
0.805
Cagra.0463s0006
Capsella grandiflora
Cagra.0463s0006
I
0.796
MYB113
Arabidopsis thaliana
AT1G66370
D
0.794
Solyc10g086250.1
Solanum lycopersicum
Solyc10g086250.1
I
0.791
fgenesh1_pg.C_scaffold_2000950
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2000950
I
0.789
Gorai.001G087200
Gossypium raimondii
Gorai.001G087200
I
0.788
Gorai.001G087400
Gossypium raimondii
Gorai.001G087400
I
0.788
Solyc10g086270.1
Solanum lycopersicum
Solyc10g086270.1
I
0.786
Carubv10020888m.g
Capsella rubella
Carubv10020888m.g
I
0.784
Cagra.0463s0008
Capsella grandiflora
Cagra.0463s0008
I
0.781
27763.m000042
Ricinus communis
27763.m000042
I
0.780
TCM_019192
Theobroma cacao
TCM_019192
I
0.779
Ciclev10013455m.g
Citrus clementina
Ciclev10013455m.g
I
0.777
scaffold_201356.1
Arabidopsis lyrata
scaffold_201356.1
I
0.773
Solyc10g086290.1
Solanum lycopersicum
Solyc10g086290.1
I
0.772
Pm029445
Prunus mume
Pm029445
I
0.772
Solyc10g086260.1
Solanum lycopersicum
Solyc10g086260.1
I
0.769
VIT_02s0033g00410
Vitis vinifera
VIT_02s0033g00410
I
0.767
VIT_02s0033g00450
Vitis vinifera
VIT_02s0033g00450
I
0.767
PK17827.1
Cannabis sativa
PK17827.1
I
0.762
VIT_14s0006g01290
Vitis vinifera
VIT_14s0006g01290
I
0.761
MTR_5g078950
Medicago truncatula
MTR_5g078950
I
0.760
VIT_02s0033g00400
Vitis vinifera
VIT_02s0033g00400
I
0.754
evm.TU.supercontig_2742.1
Carica papaya
evm.TU.supercontig_2742.1
I
0.753
evm.TU.supercontig_116.38
Carica papaya
evm.TU.supercontig_116.38
I
0.753
mgf019317m
Mimulus guttatus
mgf019317m
I
0.750
MTR_8g060940
Medicago truncatula
MTR_8g060940
I
0.748
MTR_5g079220
Medicago truncatula
MTR_5g079220
I
0.745
VIT_02s0033g00390
Vitis vinifera
VIT_02s0033g00390
I
0.743
Pm029442
Prunus mume
Pm029442
I
0.742
GLYMA09G36966
Glycine max
GLYMA09G36966
I
0.741
MTR_5g079290
Medicago truncatula
MTR_5g079290
I
0.741
Lus10042522.g
Linum usitatissimum
Lus10042522.g
I
0.740
Pm029440
Prunus mume
Pm029440
I
0.739
MTR_5g078860
Medicago truncatula
MTR_5g078860
I
0.738
PRUPE_ppa026640mg
Prunus persica
PRUPE_ppa026640mg
I
0.737
Aquca_047_00006
Aquilegia coerulea
Aquca_047_00006
I
0.734
Ca_22078
Cicer arietinum
Ca_22078
I
0.732
TCM_026054
Theobroma cacao
TCM_026054
I
0.731
MTR_5g078800
Medicago truncatula
MTR_5g078800
I
0.730
Eucgr.H04157
Eucalyptus grandis
Eucgr.H04157
I
0.729
MTR_0001s0360
Medicago truncatula
MTR_0001s0360
I
0.729
GLYMA18G49690
Glycine max
GLYMA18G49690
I
0.728
gene31413-v1.0-hybrid
Fragaria vesca
gene31413-v1.0-hybrid
I
0.728
MTR_5g078910
Medicago truncatula
MTR_5g078910
I
0.726
MTR_5g079120
Medicago truncatula
MTR_5g079120
I
0.726
Eucgr.F02842
Eucalyptus grandis
Eucgr.F02842
I
0.726
VIT_02s0033g00430
Vitis vinifera
VIT_02s0033g00430
I
0.724
Gorai.007G268800
Gossypium raimondii
Gorai.007G268800
I
0.723
chr1.CM0141.350.nd
Lotus japonicus
chr1.CM0141.350.nd
I
0.722
evm.TU.contig_42663.2
Carica papaya
evm.TU.contig_42663.2
I
0.722
Gorai.013G118300
Gossypium raimondii
Gorai.013G118300
I
0.721
VIT_14s0006g01280
Vitis vinifera
VIT_14s0006g01280
I
0.717
Lus10028513.g
Linum usitatissimum
Lus10028513.g
I
0.714
Lus10009130.g
Linum usitatissimum
Lus10009130.g
I
0.714
Cucsa.277570
Cucumis sativus
Cucsa.277570
I
0.713
PRUPE_ppa010069mg
Prunus persica
PRUPE_ppa010069mg
I
0.711
MTR_7g017260
Medicago truncatula
MTR_7g017260
I
0.708
mgf022565m
Mimulus guttatus
mgf022565m
I
0.707
GLYMA18G41520
Glycine max
GLYMA18G41520
I
0.706
30128.m008730
Ricinus communis
30128.m008730
I
0.705
Lus10028514.g
Linum usitatissimum
Lus10028514.g
I
0.704
Lus10009129.g
Linum usitatissimum
Lus10009129.g
I
0.704
evm.TU.supercontig_51.67
Carica papaya
evm.TU.supercontig_51.67
I
0.704
chr1.LjT44L17.240.nd
Lotus japonicus
chr1.LjT44L17.240.nd
I
0.703
Ca_19630
Cicer arietinum
Ca_19630
I
0.703
MTR_0197s0010
Medicago truncatula
MTR_0197s0010
I
0.703
GLYMA07G16980
Glycine max
GLYMA07G16980
I
0.702
PRUPE_ppa016711mg
Prunus persica
PRUPE_ppa016711mg
I
0.702
Aquca_015_00088
Aquilegia coerulea
Aquca_015_00088
I
0.700
MDP0000192051
Malus domestica
MDP0000192051
I
0.700
POPTR_0005s14480
Populus trichocarpa
POPTR_0005s14480
I
0.698
GLYMA09G37010
Glycine max
GLYMA09G37010
I
0.695
VIT_14s0006g01340
Vitis vinifera
VIT_14s0006g01340
I
0.694
mgf019036m
Mimulus guttatus
mgf019036m
N
0.694
MTR_5g078930
Medicago truncatula
MTR_5g078930
I
0.693
cassava36364.valid.m1
Manihot esculenta
cassava36364.valid.m1
I
0.692
POPTR_0005s14450
Populus trichocarpa
POPTR_0005s14450
I
0.688
MTR_0247s0040
Medicago truncatula
MTR_0247s0040
I
0.688
Si038905m.g
Setaria italica
Si038905m.g
I
0.688
VIT_04s0008g01810
Vitis vinifera
VIT_04s0008g01810
I
0.687
Aquca_015_00090
Aquilegia coerulea
Aquca_015_00090
I
0.685
MTR_4g125520
Medicago truncatula
MTR_4g125520
I
0.685
PRUPE_ppa020385mg
Prunus persica
PRUPE_ppa020385mg
I
0.685
Eucgr.J01586
Eucalyptus grandis
Eucgr.J01586
I
0.684
Eucgr.J01580
Eucalyptus grandis
Eucgr.J01580
I
0.684
Eucgr.J01569
Eucalyptus grandis
Eucgr.J01569
I
0.684
Eucgr.J01553
Eucalyptus grandis
Eucgr.J01553
I
0.684
POPTR_0005s14460
Populus trichocarpa
POPTR_0005s14460
I
0.680
POPTR_0005s14470
Populus trichocarpa
POPTR_0005s14470
I
0.680
Aquca_015_00085
Aquilegia coerulea
Aquca_015_00085
I
0.679
GLYMA18G49670
Glycine max
GLYMA18G49670
I
0.679
PDK_20s1447601g001
Phoenix dactylifera
PDK_20s1447601g001
I
0.679
SapurV1A.0230s0260
Salix purpurea
SapurV1A.0230s0260
I
0.677
Ca_03154
Cicer arietinum
Ca_03154
I
0.676
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.675
GLYMA19G02980
Glycine max
GLYMA19G02980
I
0.674
Eucgr.J01578
Eucalyptus grandis
Eucgr.J01578
I
0.673
ORGLA03G0196700
Oryza glaberrima
ORGLA03G0196700
I
0.673
Pm005571
Prunus mume
Pm005571
I
0.672
Eucgr.C00722
Eucalyptus grandis
Eucgr.C00722
I
0.672
MDP0000478453
Malus domestica
MDP0000478453
I
0.672
TCM_037559
Theobroma cacao
TCM_037559
I
0.672
VIT_11s0016g01320
Vitis vinifera
VIT_11s0016g01320
I
0.671
Sb01g032770
Sorghum bicolor
Sb01g032770
I
0.671
Eucgr.J01576
Eucalyptus grandis
Eucgr.J01576
I
0.671
SapurV1A.0230s0240
Salix purpurea
SapurV1A.0230s0240
I
0.670
cassava28702.m1
Manihot esculenta
cassava28702.m1
I
0.669
GLYMA10G35061
Glycine max
GLYMA10G35061
I
0.667
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.667
Gorai.001G020400
Gossypium raimondii
Gorai.001G020400
I
0.667
PDK_20s1554342g001
Phoenix dactylifera
PDK_20s1554342g001
I
0.667
PRUPE_ppa023768mg
Prunus persica
PRUPE_ppa023768mg
I
0.663
Pm005572
Prunus mume
Pm005572
I
0.663
gene15390-v1.0-hybrid
Fragaria vesca
gene15390-v1.0-hybrid
I
0.663
Lus10003277.g
Linum usitatissimum
Lus10003277.g
I
0.662
Eucgr.J01555
Eucalyptus grandis
Eucgr.J01555
I
0.662
Eucgr.J01573
Eucalyptus grandis
Eucgr.J01573
I
0.662
28226.m000839
Ricinus communis
28226.m000839
I
0.661