CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.258270
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.258270
T284485_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH
DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.740
0.839
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.258270.1
Myb
14
62
KGPWTSEEDELLINYIRENNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL
Cucsa.258270.1
Myb
68
113
RGPFTPEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHL
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
190 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cla021563
Citrullus lanatus
Cla021563
I
0.909
MTR_8g031360
Medicago truncatula
MTR_8g031360
I
0.830
Ca_13779
Cicer arietinum
Ca_13779
I
0.830
MTR_7g076740
Medicago truncatula
MTR_7g076740
I
0.819
Ca_06226
Cicer arietinum
Ca_06226
I
0.812
GLYMA18G46480
Glycine max
GLYMA18G46480
I
0.804
GLYMA09G39721
Glycine max
GLYMA09G39721
I
0.804
PRUPE_ppa007268mg
Prunus persica
PRUPE_ppa007268mg
I
0.800
Pm018056
Prunus mume
Pm018056
I
0.800
GLYMA03G01540
Glycine max
GLYMA03G01540
I
0.791
Lus10030378.g
Linum usitatissimum
Lus10030378.g
I
0.789
SapurV1A.0024s0060
Salix purpurea
SapurV1A.0024s0060
I
0.789
evm.TU.supercontig_18.232
Carica papaya
evm.TU.supercontig_18.232
I
0.785
PK05754.1
Cannabis sativa
PK05754.1
I
0.783
GLYMA07G07960
Glycine max
GLYMA07G07960
I
0.782
Lus10014784.g
Linum usitatissimum
Lus10014784.g
I
0.780
Pavir.Da02398
Panicum virgatum
Pavir.Da02398
I
0.778
Eucgr.D02271
Eucalyptus grandis
Eucgr.D02271
I
0.778
AtMYB17
Populus trichocarpa
POPTR_0014s07700
I
0.774
SapurV1A.0533s0230
Salix purpurea
SapurV1A.0533s0230
I
0.770
Bra007588
Brassica rapa
Bra007588
I
0.766
Thhalv10006126m.g
Eutrema salsugineum
Thhalv10006126m.g
I
0.766
Bo8g095790
Brassica oleracea
Bo8g095790
I
0.766
Bra003443
Brassica rapa
Bra003443
I
0.766
TCM_005371
Theobroma cacao
TCM_005371
I
0.765
Ciclev10021268m.g
Citrus clementina
Ciclev10021268m.g
I
0.765
orange1.1g021486m.g
Citrus sinensis
orange1.1g021486m.g
I
0.765
cassava25066.valid.m1
Manihot esculenta
cassava25066.valid.m1
I
0.765
30174.m009001
Ricinus communis
30174.m009001
I
0.765
gene19065-v1.0-hybrid
Fragaria vesca
gene19065-v1.0-hybrid
I
0.760
Aquca_013_00356
Aquilegia coerulea
Aquca_013_00356
I
0.759
Gorai.001G169700
Gossypium raimondii
Gorai.001G169700
I
0.758
Si006790m.g
Setaria italica
Si006790m.g
I
0.756
BRADI1G51747
Brachypodium distachyon
BRADI1G51747
I
0.756
PGSC0003DMG400021654
Solanum tuberosum
PGSC0003DMG400021654
I
0.755
Solyc05g048830.2
Solanum lycopersicum
Solyc05g048830.2
I
0.755
Gorai.004G157600
Gossypium raimondii
Gorai.004G157600
I
0.755
PGSC0003DMG400000027
Solanum tuberosum
PGSC0003DMG400000027
I
0.753
Bra014446
Brassica rapa
Bra014446
I
0.751
Solyc01g094360.2
Solanum lycopersicum
Solyc01g094360.2
I
0.750
mgf012840m
Mimulus guttatus
mgf012840m
I
0.748
AtMYB17
Vitis vinifera
VIT_15s0046g03190
I
0.747
Pavir.Ab02419
Panicum virgatum
Pavir.Ab02419
I
0.740
Pavir.Aa01232
Panicum virgatum
Pavir.Aa01232
I
0.740
AtMYB17
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_5002102
I
0.740
AtMYB17
Arabidopsis thaliana
AT3G61250
D
0.740
Sb04g033670
Sorghum bicolor
Sb04g033670
I
0.740
Si017934m.g
Setaria italica
Si017934m.g
I
0.740
Eucgr.E00175
Eucalyptus grandis
Eucgr.E00175
I
0.739
Cagra.3373s0030
Capsella grandiflora
Cagra.3373s0030
I
0.728
Carubv10018382m.g
Capsella rubella
Carubv10018382m.g
I
0.728
Bostr.13158s0117
Boechera stricta
Bostr.13158s0117
I
0.728
Traes_7DS_91CCCF6DB1
Triticum aestivum
Traes_7DS_91CCCF6DB1
I
0.726
Traes_4AL_9BF07972C
Triticum aestivum
Traes_4AL_9BF07972C
I
0.726
Traes_4DL_4EE7DFCCD
Triticum aestivum
Traes_4DL_4EE7DFCCD
I
0.726
Traes_7DS_91CCCF6DB
Triticum aestivum
Traes_7DS_91CCCF6DB
I
0.726
Pavir.J23197
Panicum virgatum
Pavir.J23197
I
0.726
F775_14942
Aegilops tauschii
F775_14942
I
0.726
evm.TU.supercontig_107.48
Carica papaya
evm.TU.supercontig_107.48
I
0.725
GSMUA_Achr11G04090_001
Musa acuminata
GSMUA_Achr11G04090_001
I
0.724
GRMZM2G040924
Zea mays
GRMZM2G040924
I
0.723
OS02G0641900
Oryza sativa
OS02G0641900
I
0.723
GRMZM2G111045
Zea mays
GRMZM2G111045
I
0.723
F775_04867
Aegilops tauschii
F775_04867
I
0.723
OB02G32960
Oryza brachyantha
OB02G32960
I
0.723
ORUFI02G27000
Oryza rufipogon
ORUFI02G27000
I
0.723
BGIOSGA008700
Oryza indica
BGIOSGA008700
I
0.723
TRIUR3_17294
Triticum urartu
TRIUR3_17294
I
0.723
cassava40203.m1
Manihot esculenta
cassava40203.m1
I
0.720
Bo6g077600
Brassica oleracea
Bo6g077600
I
0.718
GRMZM2G102790
Zea mays
GRMZM2G102790
I
0.714
POPTR_0015s13180
Populus trichocarpa
POPTR_0015s13180
I
0.709
TCM_001102
Theobroma cacao
TCM_001102
I
0.699
Gorai.007G236800
Gossypium raimondii
Gorai.007G236800
I
0.699
GSMUA_Achr5G12230_001
Musa acuminata
GSMUA_Achr5G12230_001
I
0.693
Gorai.013G114900
Gossypium raimondii
Gorai.013G114900
I
0.693
estExt_gwp_gw1.C_20043
Physcomitrella patens
estExt_gwp_gw1.C_20043
I
0.690
Carubv10003148m.g
Capsella rubella
Carubv10003148m.g
I
0.689
Cagra.1085s0031
Capsella grandiflora
Cagra.1085s0031
I
0.689
OPUNC03G18740
Oryza punctata
OPUNC03G18740
I
0.688
e_gw1.326.5.1
Physcomitrella patens
e_gw1.326.5.1
I
0.687
e_gw1.106.133.1
Physcomitrella patens
e_gw1.106.133.1
I
0.687
GRMZM2G044824
Zea mays
GRMZM2G044824
I
0.687
Gorai.008G179600
Gossypium raimondii
Gorai.008G179600
I
0.687
GSMUA_Achr10G19130_001
Musa acuminata
GSMUA_Achr10G19130_001
I
0.685
BRADI3G36660
Brachypodium distachyon
BRADI3G36660
I
0.683
F775_52372
Aegilops tauschii
F775_52372
I
0.683
MDP0000127521
Malus domestica
MDP0000127521
I
0.682
orange1.1g045434m.g
Citrus sinensis
orange1.1g045434m.g
I
0.682
Ciclev10026023m.g
Citrus clementina
Ciclev10026023m.g
I
0.682
MLOC_39554
Hordeum vulgare
MLOC_39554
I
0.680
Traes_2DL_5A0300CE0
Triticum aestivum
Traes_2DL_5A0300CE0
I
0.678
Gorai.003G039500
Gossypium raimondii
Gorai.003G039500
I
0.678
GSMUA_Achr6G04130_001
Musa acuminata
GSMUA_Achr6G04130_001
I
0.678
MLOC_68698
Hordeum vulgare
MLOC_68698
I
0.678
Traes_2BL_79F1B50DF
Triticum aestivum
Traes_2BL_79F1B50DF
I
0.678
gene12564-v1.0-hybrid
Fragaria vesca
gene12564-v1.0-hybrid
I
0.675
evm.TU.supercontig_90.68
Carica papaya
evm.TU.supercontig_90.68
I
0.675
Pm004557
Prunus mume
Pm004557
I
0.675
PRUPE_ppa026006mg
Prunus persica
PRUPE_ppa026006mg
I
0.675
Bo2g012520
Brassica oleracea
Bo2g012520
I
0.674
BRADI1G45510
Brachypodium distachyon
BRADI1G45510
I
0.674
MTR_7g011170
Medicago truncatula
MTR_7g011170
I
0.674
OB06G17320
Oryza brachyantha
OB06G17320
I
0.674
Bra023515
Brassica rapa
Bra023515
I
0.674
GSMUA_Achr10G24560_001
Musa acuminata
GSMUA_Achr10G24560_001
I
0.673
e_gw1.317.17.1
Physcomitrella patens
e_gw1.317.17.1
I
0.672
evm.TU.supercontig_752.1
Carica papaya
evm.TU.supercontig_752.1
I
0.672
cassava26282.m1
Manihot esculenta
cassava26282.m1
I
0.672
chr1.CM0591.530.nd
Lotus japonicus
chr1.CM0591.530.nd
I
0.671
cassava17115.m1
Manihot esculenta
cassava17115.m1
I
0.671
F775_06136
Aegilops tauschii
F775_06136
I
0.670
ORGLA08G0162300
Oryza glaberrima
ORGLA08G0162300
I
0.670
ORUFI08G20890
Oryza rufipogon
ORUFI08G20890
I
0.670
Traes_7BS_7E91DE546
Triticum aestivum
Traes_7BS_7E91DE546
I
0.670
ORGLA06G0073000
Oryza glaberrima
ORGLA06G0073000
I
0.670
OS06G0221000
Oryza sativa
OS06G0221000
I
0.670
OMERI06G09300
Oryza meridionalis
OMERI06G09300
I
0.670
OMERI08G14710
Oryza meridionalis
OMERI08G14710
I
0.670
ONIVA06G08940
Oryza nivara
ONIVA06G08940
I
0.670
OGLUM06G08200
Oryza glumaepatula
OGLUM06G08200
I
0.670
OGLUM08G19650
Oryza glumaepatula
OGLUM08G19650
I
0.670
OB08G25790
Oryza brachyantha
OB08G25790
I
0.670
Pavir.Fb01820
Panicum virgatum
Pavir.Fb01820
I
0.670
OBART06G07710
Oryza barthii
OBART06G07710
I
0.670
Traes_7DS_469ED3135
Triticum aestivum
Traes_7DS_469ED3135
I
0.670
ONIVA08G20680
Oryza nivara
ONIVA08G20680
I
0.670
chr2.CM0124.80.nc
Lotus japonicus
chr2.CM0124.80.nc
I
0.669
gene16287-v1.0-hybrid
Fragaria vesca
gene16287-v1.0-hybrid
I
0.669
MDP0000320772
Malus domestica
MDP0000320772
I
0.669
VIT_07s0141g00100
Vitis vinifera
VIT_07s0141g00100
I
0.669
Traes_6BL_5A2DB8F78
Triticum aestivum
Traes_6BL_5A2DB8F78
I
0.669
MTR_4g082290
Medicago truncatula
MTR_4g082290
I
0.669
Traes_2AL_5EE86C5BC
Triticum aestivum
Traes_2AL_5EE86C5BC
I
0.669
PRUPE_ppa019923mg
Prunus persica
PRUPE_ppa019923mg
I
0.669
Traes_6DL_499F64524
Triticum aestivum
Traes_6DL_499F64524
I
0.669
F775_26732
Aegilops tauschii
F775_26732
I
0.669
Pm002011
Prunus mume
Pm002011
I
0.669
GSMUA_Achr9G14850_001
Musa acuminata
GSMUA_Achr9G14850_001
I
0.669
Ca_27606
Cicer arietinum
Ca_27606
I
0.669
OB04G26860
Oryza brachyantha
OB04G26860
I
0.668
ORUFI04G21320
Oryza rufipogon
ORUFI04G21320
I
0.668
ORGLA04G0169000
Oryza glaberrima
ORGLA04G0169000
I
0.668
BRADI3G38807
Brachypodium distachyon
BRADI3G38807
I
0.668
BGIOSGA016822
Oryza indica
BGIOSGA016822
I
0.668
ONIVA04G17990
Oryza nivara
ONIVA04G17990
I
0.668
ONIVA06G00830
Oryza nivara
ONIVA06G00830
I
0.667
OS06G0112700
Oryza sativa
OS06G0112700
I
0.667
ORUFI06G00810
Oryza rufipogon
ORUFI06G00810
I
0.667
BGIOSGA022174
Oryza indica
BGIOSGA022174
I
0.667
OPUNC06G00590
Oryza punctata
OPUNC06G00590
I
0.667
OBART06G00820
Oryza barthii
OBART06G00820
I
0.667
BGIOSGA022168
Oryza indica
BGIOSGA022168
I
0.667
BGIOSGA022169
Oryza indica
BGIOSGA022169
I
0.667
OMERI06G00710
Oryza meridionalis
OMERI06G00710
I
0.667
OGLUM06G00580
Oryza glumaepatula
OGLUM06G00580
I
0.667
GLYMA07G35561
Glycine max
GLYMA07G35561
I
0.666
GLYMA20G04240
Glycine max
GLYMA20G04240
I
0.666
MDP0000302984
Malus domestica
MDP0000302984
I
0.665
GSMUA_AchrUn_randomG15560_001
Musa acuminata
GSMUA_AchrUn_randomG15560_001
I
0.665
SapurV1A.2488s0010
Salix purpurea
SapurV1A.2488s0010
I
0.665
SapurV1A.0403s0220
Salix purpurea
SapurV1A.0403s0220
I
0.665
MDP0000228252
Malus domestica
MDP0000228252
I
0.665
Lus10041142.g
Linum usitatissimum
Lus10041142.g
I
0.665
Gorai.009G281000
Gossypium raimondii
Gorai.009G281000
I
0.665
Lus10036472.g
Linum usitatissimum
Lus10036472.g
I
0.665
TCM_034902
Theobroma cacao
TCM_034902
I
0.665
evm.TU.supercontig_36.134
Carica papaya
evm.TU.supercontig_36.134
I
0.665
POPTR_0005s07590
Populus trichocarpa
POPTR_0005s07590
I
0.665
LPERR04G19330
Leersia perrieri
LPERR04G19330
I
0.664
Eucgr.I00442
Eucalyptus grandis
Eucgr.I00442
I
0.664
Traes_2DL_25FD0FFB4
Triticum aestivum
Traes_2DL_25FD0FFB4
I
0.664
Traes_2DL_6BD0572DF
Triticum aestivum
Traes_2DL_6BD0572DF
I
0.664
Ciclev10020765m.g
Citrus clementina
Ciclev10020765m.g
I
0.663
Aquca_005_00496
Aquilegia coerulea
Aquca_005_00496
I
0.663
mgf016794m
Mimulus guttatus
mgf016794m
I
0.663
AMTR_s00010p00267100
Amborella trichopoda
AMTR_s00010p00267100
I
0.663
orange1.1g039198m.g
Citrus sinensis
orange1.1g039198m.g
I
0.663
chr3.CM0127.290.nc
Lotus japonicus
chr3.CM0127.290.nc
I
0.663
MTR_4g082230
Medicago truncatula
MTR_4g082230
I
0.662
Sb06g023620
Sorghum bicolor
Sb06g023620
I
0.662
GRMZM2G081557
Zea mays
GRMZM2G081557
N
0.662
BRADI3G49987
Brachypodium distachyon
BRADI3G49987
I
0.662
Pavir.Db01850
Panicum virgatum
Pavir.Db01850
I
0.661
Si008086m.g
Setaria italica
Si008086m.g
I
0.661
POPTR_0012s13240
Populus trichocarpa
POPTR_0012s13240
I
0.661
Pavir.Da01312
Panicum virgatum
Pavir.Da01312
I
0.661
Traes_2AL_41B71F83C
Triticum aestivum
Traes_2AL_41B71F83C
I
0.661
BGIOSGA010612
Oryza indica
BGIOSGA010612
I
0.661
SapurV1A.1253s0080
Salix purpurea
SapurV1A.1253s0080
I
0.661