CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo9g014940
(
Brassica oleracea
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
Bo9g014940
T292476_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NAC101
M07241_2.00
Arabidopsis thaliana
TGCKTVNDNHNYAMG
CKTRNDNHNBAMGCA
Dap-seq
OMalley et al.(2016)
VND6_colamp_a
0.993
0.956
NAC101
M07242_2.00
Arabidopsis thaliana
TTGCKTVHDNNNYAMGYHWHN
NDWDRCKTRNNNHDBAMGCAA
Dap-seq
OMalley et al.(2016)
VND6_col_v31
0.993
0.956
NAC002
M00970_2.00
Arabidopsis thaliana
NBACGYAWMN
NKWTRCGTVN
PBM
Lindemose et al.(2014)
ATAF1
0.879
0.579
NAC002
M07159_2.00
Arabidopsis thaliana
KVCGTRWNNNWHWHKNHHWYND
HNRWDDNMDWDWNNNWYACGBM
Dap-seq
OMalley et al.(2016)
ATAF1_col_a
0.879
0.579
NAC002
M07160_2.00
Arabidopsis thaliana
YACGY
RCGTR
Dap-seq
OMalley et al.(2016)
ATAF1_colamp_a
0.879
0.579
AT3G12910
M07204_2.00
Arabidopsis thaliana
YGSCGKNDNDDHNMCGB
VCGKNDHHNHNMCGSCR
Dap-seq
OMalley et al.(2016)
AT3G12910_col_a
0.879
0.535
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo9g014940.1
NAC/NAM
8
135
PPGYRFHPTDEELVDYYLKNKVAFPEIQVDVIKDVDLYKIEPWDIQELCGRGAGEKREWYFFSYKDKKYPTGTRTNRATGSGFWKATGRDKAIYSKQELVGMRKTLVFYKGRAPNGQKSDWIMHEYRL
Links
Other
NAC/NAM
family TFs
Other
Brassica oleracea
TFs
150 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra035896
Brassica rapa
Bra035896
I
0.993
VND6
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_8001814
I
0.993
NAC101
Arabidopsis thaliana
AT5G62380
D
0.993
Bostr.0568s0569
Boechera stricta
Bostr.0568s0569
I
0.993
Cagra.4003s0027
Capsella grandiflora
Cagra.4003s0027
I
0.992
Bo3g107700
Brassica oleracea
Bo3g107700
I
0.992
Bra010077
Brassica rapa
Bra010077
I
0.992
Thhalv10004488m.g
Eutrema salsugineum
Thhalv10004488m.g
I
0.992
Bo2g164090
Brassica oleracea
Bo2g164090
I
0.992
Bra029266
Brassica rapa
Bra029266
I
0.992
Carubv10026697m.g
Capsella rubella
Carubv10026697m.g
I
0.992
Cla011742
Citrullus lanatus
Cla011742
I
0.982
NAC026
Arabidopsis thaliana
AT1G62700
I
0.980
Thhalv10023502m.g
Eutrema salsugineum
Thhalv10023502m.g
I
0.980
mgf002365m
Mimulus guttatus
mgf002365m
I
0.979
Si022723m.g
Setaria italica
Si022723m.g
I
0.944
Pavir.Ib01528
Panicum virgatum
Pavir.Ib01528
I
0.940
Si036303m.g
Setaria italica
Si036303m.g
I
0.938
fgenesh1_pg.scaffold_182000024
Physcomitrella patens
fgenesh1_pg.scaffold_182000024
I
0.934
gw1.6.394.1
Physcomitrella patens
gw1.6.394.1
I
0.925
GRMZM2G052239
Zea mays
GRMZM2G052239
I
0.924
Pavir.Ia03443
Panicum virgatum
Pavir.Ia03443
I
0.924
GSMUA_Achr4G32010_001
Musa acuminata
GSMUA_Achr4G32010_001
I
0.923
gw1.1.690.1
Physcomitrella patens
gw1.1.690.1
I
0.921
Si022714m.g
Setaria italica
Si022714m.g
I
0.917
mgf004020m
Mimulus guttatus
mgf004020m
I
0.916
MDP0000285555
Malus domestica
MDP0000285555
I
0.915
TRIUR3_29250
Triticum urartu
TRIUR3_29250
I
0.912
F775_30297
Aegilops tauschii
F775_30297
I
0.912
Traes_7DL_BDD45DB24
Triticum aestivum
Traes_7DL_BDD45DB24
I
0.912
mgf019285m
Mimulus guttatus
mgf019285m
I
0.910
GSMUA_Achr6G31580_001
Musa acuminata
GSMUA_Achr6G31580_001
I
0.906
BRADI4G37327
Brachypodium distachyon
BRADI4G37327
I
0.903
PRUPE_ppa017765mg
Prunus persica
PRUPE_ppa017765mg
I
0.902
F775_13961
Aegilops tauschii
F775_13961
I
0.901
MTR_2g068920
Medicago truncatula
MTR_2g068920
I
0.899
Solyc08g074300.2
Solanum lycopersicum
Solyc08g074300.2
I
0.898
MTR_2g068880
Medicago truncatula
MTR_2g068880
I
0.897
Sb07g005610
Sorghum bicolor
Sb07g005610
I
0.897
Pavir.Cb00167
Panicum virgatum
Pavir.Cb00167
I
0.896
MLOC_37843
Hordeum vulgare
MLOC_37843
I
0.895
LPERR12G01440
Leersia perrieri
LPERR12G01440
I
0.895
TRIUR3_13805
Triticum urartu
TRIUR3_13805
I
0.895
Ca_13571
Cicer arietinum
Ca_13571
I
0.895
Traes_5BL_8BE382FE3
Triticum aestivum
Traes_5BL_8BE382FE3
I
0.895
Traes_5DL_B69423A67
Triticum aestivum
Traes_5DL_B69423A67
I
0.895
Gorai.006G088400
Gossypium raimondii
Gorai.006G088400
I
0.894
OMERI04G25730
Oryza meridionalis
OMERI04G25730
I
0.894
GSMUA_Achr9G10040_001
Musa acuminata
GSMUA_Achr9G10040_001
I
0.894
Sb08g022560
Sorghum bicolor
Sb08g022560
I
0.893
PGSC0003DMG400029593
Solanum tuberosum
PGSC0003DMG400029593
I
0.893
PK26157.1
Cannabis sativa
PK26157.1
I
0.893
POPTR_0003s14950
Populus trichocarpa
POPTR_0003s14950
I
0.893
POPTR_0004s04920
Populus trichocarpa
POPTR_0004s04920
I
0.892
GSMUA_Achr7G21780_001
Musa acuminata
GSMUA_Achr7G21780_001
I
0.891
Thhalv10012158m.g
Eutrema salsugineum
Thhalv10012158m.g
I
0.891
ORGLA05G0143100
Oryza glaberrima
ORGLA05G0143100
I
0.890
Cagra.27691s0001
Capsella grandiflora
Cagra.27691s0001
I
0.890
OPUNC05G14600
Oryza punctata
OPUNC05G14600
I
0.890
ORUFI05G17750
Oryza rufipogon
ORUFI05G17750
I
0.890
OS05G0415400
Oryza sativa
OS05G0415400
I
0.890
OPUNC04G28220
Oryza punctata
OPUNC04G28220
I
0.890
OGLUM05G17550
Oryza glumaepatula
OGLUM05G17550
I
0.890
OBART05G16540
Oryza barthii
OBART05G16540
I
0.890
BGIOSGA018048
Oryza indica
BGIOSGA018048
I
0.890
ONIVA05G17220
Oryza nivara
ONIVA05G17220
I
0.890
GLYMA04G13660
Glycine max
GLYMA04G13660
I
0.889
LPERR11G01300
Leersia perrieri
LPERR11G01300
I
0.889
TCM_035160
Theobroma cacao
TCM_035160
I
0.888
Gorai.010G051900
Gossypium raimondii
Gorai.010G051900
I
0.888
Sb02g032230
Sorghum bicolor
Sb02g032230
I
0.888
Gorai.010G171100
Gossypium raimondii
Gorai.010G171100
I
0.888
LPERR09G14720
Leersia perrieri
LPERR09G14720
I
0.888
SapurV1A.0059s0580
Salix purpurea
SapurV1A.0059s0580
I
0.888
Pavir.Ba01386
Panicum virgatum
Pavir.Ba01386
I
0.887
GRMZM2G167018
Zea mays
GRMZM2G167018
I
0.887
anac032
Vitis vinifera
VIT_18s0001g02300
I
0.887
Pavir.Bb02626
Panicum virgatum
Pavir.Bb02626
I
0.887
GLYMA09G36600
Glycine max
GLYMA09G36600
I
0.886
mgf015836m
Mimulus guttatus
mgf015836m
I
0.886
SapurV1A.0076s0070
Salix purpurea
SapurV1A.0076s0070
I
0.886
Si032702m.g
Setaria italica
Si032702m.g
I
0.886
Aquca_014_00255
Aquilegia coerulea
Aquca_014_00255
I
0.886
ORGLA09G0151800
Oryza glaberrima
ORGLA09G0151800
I
0.885
ONIVA09G20130
Oryza nivara
ONIVA09G20130
I
0.885
OMERI09G14170
Oryza meridionalis
OMERI09G14170
I
0.885
OGLUM09G19480
Oryza glumaepatula
OGLUM09G19480
I
0.885
OB09G25590
Oryza brachyantha
OB09G25590
I
0.885
Bra034719
Brassica rapa
Bra034719
I
0.885
BGIOSGA031230
Oryza indica
BGIOSGA031230
I
0.885
Eucgr.K02303
Eucalyptus grandis
Eucgr.K02303
I
0.885
Gorai.005G088800
Gossypium raimondii
Gorai.005G088800
I
0.885
evm.TU.contig_29561
Carica papaya
evm.TU.contig_29561
I
0.885
mgf013201m
Mimulus guttatus
mgf013201m
I
0.884
GSMUA_Achr10G08120_001
Musa acuminata
GSMUA_Achr10G08120_001
I
0.884
e_gw1.117.35.1
Physcomitrella patens
e_gw1.117.35.1
I
0.883
GLYMA06G47680
Glycine max
GLYMA06G47680
I
0.883
Gorai.010G236700
Gossypium raimondii
Gorai.010G236700
I
0.882
MDP0000206868
Malus domestica
MDP0000206868
I
0.882
Bostr.3640s0064
Boechera stricta
Bostr.3640s0064
I
0.881
Cagra.5641s0055
Capsella grandiflora
Cagra.5641s0055
I
0.881
Carubv10014270m.g
Capsella rubella
Carubv10014270m.g
I
0.881
SapurV1A.0024s0340
Salix purpurea
SapurV1A.0024s0340
I
0.880
SELMODRAFT_71305
Selaginella moellendorffii
SELMODRAFT_71305
I
0.880
Bo3g065200
Brassica oleracea
Bo3g065200
I
0.880
SELMODRAFT_69090
Selaginella moellendorffii
SELMODRAFT_69090
I
0.880
e_gw1.164.26.1
Physcomitrella patens
e_gw1.164.26.1
I
0.880
Solyc11g017470.1
Solanum lycopersicum
Solyc11g017470.1
I
0.880
Thhalv10021225m.g
Eutrema salsugineum
Thhalv10021225m.g
I
0.879
GLYMA05G32850
Glycine max
GLYMA05G32850
I
0.879
Carubv10009926m.g
Capsella rubella
Carubv10009926m.g
I
0.879
AT3G12910
Arabidopsis thaliana
AT3G12910
D
0.879
Bo1g138800
Brassica oleracea
Bo1g138800
I
0.879
Bostr.5325s0094
Boechera stricta
Bostr.5325s0094
I
0.879
NAC002
Arabidopsis thaliana
AT1G01720
D
0.879
Cagra.1968s0112
Capsella grandiflora
Cagra.1968s0112
I
0.879
SapurV1A.0365s0200
Salix purpurea
SapurV1A.0365s0200
I
0.879
Bra039353
Brassica rapa
Bra039353
I
0.879
fgenesh2_kg.3__1353__AT3G12910.1
Arabidopsis lyrata
fgenesh2_kg.3__1353__AT3G12910.1
I
0.879
Bra033239
Brassica rapa
Bra033239
I
0.879
Bo5g001100
Brassica oleracea
Bo5g001100
I
0.879
SapurV1A.3767s0010
Salix purpurea
SapurV1A.3767s0010
I
0.879
MTR_8g094580
Medicago truncatula
MTR_8g094580
I
0.878
GLYMA14G24220
Glycine max
GLYMA14G24220
I
0.878
VIT_06s0004g00020
Vitis vinifera
VIT_06s0004g00020
I
0.878
cassava28909.valid.m1
Manihot esculenta
cassava28909.valid.m1
I
0.877
OMERI05G14410
Oryza meridionalis
OMERI05G14410
I
0.877
SapurV1A.0740s0040
Salix purpurea
SapurV1A.0740s0040
I
0.877
Sb02g006680
Sorghum bicolor
Sb02g006680
I
0.876
GRMZM2G079632
Zea mays
GRMZM2G079632
I
0.876
OGLUM04G30580
Oryza glumaepatula
OGLUM04G30580
I
0.875
SapurV1A.0367s0210
Salix purpurea
SapurV1A.0367s0210
I
0.875
BRADI1G32660
Brachypodium distachyon
BRADI1G32660
I
0.875
ORUFI04G32410
Oryza rufipogon
ORUFI04G32410
I
0.875
OS04G0691300
Oryza sativa
OS04G0691300
I
0.875
GRMZM2G162739
Zea mays
GRMZM2G162739
I
0.875
ORGLA04G0270600
Oryza glaberrima
ORGLA04G0270600
I
0.875
BGIOSGA014034
Oryza indica
BGIOSGA014034
I
0.875
ONIVA04G29890
Oryza nivara
ONIVA04G29890
I
0.875
SapurV1A.0093s0260
Salix purpurea
SapurV1A.0093s0260
I
0.875
ATAF1
Arabidopsis lyrata
scaffold_100066.1
I
0.874
GSMUA_Achr4G02390_001
Musa acuminata
GSMUA_Achr4G02390_001
I
0.873
e_gw1.164.18.1
Physcomitrella patens
e_gw1.164.18.1
I
0.872
e_gw1.140.53.1
Physcomitrella patens
e_gw1.140.53.1
I
0.872
ORUFI08G03870
Oryza rufipogon
ORUFI08G03870
I
0.872
e_gw1.259.4.1
Physcomitrella patens
e_gw1.259.4.1
I
0.872
OS08G0157900
Oryza sativa
OS08G0157900
I
0.872
BGIOSGA027623
Oryza indica
BGIOSGA027623
I
0.872
ONIVA08G03440
Oryza nivara
ONIVA08G03440
I
0.872
MLOC_25708
Hordeum vulgare
MLOC_25708
N
0.871